Rh5BG500600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000474
Physical Location & Seq
Forward (+)
79665844 .. 79673597
7754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG500600.1

Sequence Viewer

Length: 324 bp
ATGTCACAAAATTGGAACACTTTGATTTTCGAAGGCCTTGTGCTGCAGCACCCACCCCACAACCTTAGAGCTGCCCTGAATAGAAGTTATTTGCCTCTCAAAAACAAAGATGTGTGCTTTGAATTATTTTCAAGCCGATGTAAGAATAACATAAAAGAATGGGACGCGACACAGCGGAATGATGAAGCCTACGCTCCAGTTACGATCGAGTATGGGTTTCCACCAGAGCCGTTCCGTGGATATTATGACAATTTAGAGCAATGTGAAGACAACTTCAACCTAAATTGTGTTAAAGAGATTTACCGCGTATATCACAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.75

Weight (kDa)

5.88

Isoelectric Point (pI)

58.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca FvH4_3g40551
malus_domestica MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis pycom16g22710
rosa_chinensis RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 167, 306
AciI CCGC 2 cut(s) 175, 304
AcsI RAATTY 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 3 cut(s) 122, 132, 277
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
AoxI GGCC 1 cut(s) 34
ApeKI GCWGC 3 cut(s) 43, 46, 71
ApoI RAATTY 1 cut(s) 318
AsuII TTCGAA 1 cut(s) 30
BbsI GAAGAC 1 cut(s) 273
BbvI GCAGC 3 cut(s) 30, 58, 58
BceAI ACGGC 1 cut(s) 214
BfmI CTRYAG 1 cut(s) 44
BisI GCNGC 3 cut(s) 44, 47, 72
BlsI GCNGC 3 cut(s) 45, 48, 73
BpiI GAAGAC 1 cut(s) 273
BpmI CTGGAG 1 cut(s) 180
Bpu14I TTCGAA 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 235
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMI GCAATG 1 cut(s) 266
BseNI ACTGG 1 cut(s) 197
BseXI GCAGC 3 cut(s) 30, 58, 58
Bsh1236I CGCG 2 cut(s) 167, 306
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 1 cut(s) 36
BsiEI CGRYCG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 1 cut(s) 36
Bsp119I TTCGAA 1 cut(s) 30
Bsp143I GATC 1 cut(s) 204
BspACI CCGC 2 cut(s) 175, 304
BspANI GGCC 1 cut(s) 36
BspFNI CGCG 2 cut(s) 167, 306
BspMAI CTGCAG 1 cut(s) 48
BspT104I TTCGAA 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 266
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 1 cut(s) 204
BstBI TTCGAA 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 65
BstDSI CCRYGG 1 cut(s) 235
BstFNI CGCG 2 cut(s) 167, 306
BstKTI GATC 1 cut(s) 207
BstMBI GATC 1 cut(s) 204
BstMCI CGRYCG 1 cut(s) 207
BstSFI CTRYAG 1 cut(s) 44
BstUI CGCG 2 cut(s) 167, 306
BstV1I GCAGC 3 cut(s) 30, 58, 58
BstV2I GAAGAC 1 cut(s) 273
BsuRI GGCC 1 cut(s) 36
BtgI CCRYGG 1 cut(s) 235
CseI GACGC 1 cut(s) 173
CviJI RGCY 5 cut(s) 36, 71, 135, 188, 229
CviKI_1 RGCY 5 cut(s) 36, 71, 135, 188, 229
DdeI CTNAG 1 cut(s) 65
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
Eco147I AGGCCT 1 cut(s) 36
FaiI YATR 4 cut(s) 152, 213, 246, 310
FaqI GGGAC 1 cut(s) 176
Fnu4HI GCNGC 3 cut(s) 44, 47, 72
Fsp4HI GCNGC 3 cut(s) 44, 47, 72
GluI GCNGC 3 cut(s) 44, 47, 72
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 1 cut(s) 36
HgaI GACGC 1 cut(s) 173
HpyAV CCTTC 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 46
HpyF3I CTNAG 1 cut(s) 65
Kzo9I GATC 1 cut(s) 204
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 3 cut(s) 89, 210, 237
Lsp1109I GCAGC 3 cut(s) 30, 58, 58
MaeIII GTNAC 2 cut(s) 3, 199
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 1 cut(s) 278
MluCI AATT 5 cut(s) 10, 122, 250, 283, 318
MnlI CCTC 1 cut(s) 105
MseI TTAA 1 cut(s) 291
MspA1I CMGCKG 1 cut(s) 175
MvnI CGCG 2 cut(s) 167, 306
NdeII GATC 1 cut(s) 204
NmuCI GTSAC 1 cut(s) 3
NspV TTCGAA 1 cut(s) 30
PceI AGGCCT 1 cut(s) 36
PkrI GCNGC 3 cut(s) 45, 48, 73
Ple19I CGATCG 1 cut(s) 207
PstI CTGCAG 1 cut(s) 48
PvuI CGATCG 1 cut(s) 207
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 3 cut(s) 44, 47, 72
Sau3AI GATC 1 cut(s) 204
SetI ASST 3 cut(s) 66, 73, 282
SfcI CTRYAG 1 cut(s) 44
SfuI TTCGAA 1 cut(s) 30
SgeI CNNG 9 cut(s) 50, 88, 144, 178, 209, 220, 236, 248, 317
Sse9I AATT 5 cut(s) 10, 122, 250, 283, 318
SseBI AGGCCT 1 cut(s) 36
SsiI CCGC 2 cut(s) 175, 304
StuI AGGCCT 1 cut(s) 36
TaqI TCGA 2 cut(s) 30, 207
TasI AATT 5 cut(s) 10, 122, 250, 283, 318
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 3 cut(s) 43, 46, 71
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 198
TspGWI ACGGA 1 cut(s) 224
XapI RAATTY 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.