AT3G01185

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000474
Physical Location & Seq
Forward (+)
66151 .. 66980
830 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G01185.1

Sequence Viewer

Length: 447 bp
ATGAAGAAAAATAATCACGTTTACATGGCTTTTGTTCTAATCACCACGTTGGTACTGTTTGCTTATCCAAGTTTGGCAGATGATGAGAAACCGTTGATAGATCCCAATATTGATTTAGATTCCACGTTTGCAAGATCTCCGAGTACGAGTGAATACAATATAGACATGCTTAATAAACAGTCAACAGAACTTGTTCAGTTTGCCGGGACTTGCGCTGGCTTGATGGGGGGAGAAAAATGTAGCGATCAAGTCATGTCTGAGATTCTTCAAAACATACCAACTTCGAGGTATTGTTGTCTGAAAATGATCATATATGGCCAAGAATGTCACATGGTGCTGAGGAATCTTTTGTTTCAGACTTATTATTACAAACCATTTGCCTCTAAAGGTCGTCCCAGGATTCTTAAAGTTTGGAACAGATGTTCTGCTGAAGTTGGTGGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

148

Amino Acids

16.81

Weight (kDa)

7.56

Isoelectric Point (pI)

64.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 71 - 142 5.3e-12 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca FvH4_3g40551
malus_domestica MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis pycom16g22710
rosa_chinensis RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 95
AcoI YGGCCR 1 cut(s) 316
AdeI CACNNNGTG 1 cut(s) 334
AfaI GTAC 2 cut(s) 54, 145
AgsI TTSAA 1 cut(s) 269
AjnI CCWGG 1 cut(s) 395
AloI GAACNNNNNNTCC 2 cut(s) 406, 438
AlwI GGATC 1 cut(s) 95
AoxI GGCC 1 cut(s) 316
Asp700I GAANNNNTTC 1 cut(s) 192
AspLEI GCGC 1 cut(s) 215
AsuC2I CCSGG 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 34
BalI TGGCCA 1 cut(s) 318
BbvCI CCTCAGC 1 cut(s) 338
BccI CCATC 1 cut(s) 217
BciT130I CCWGG 1 cut(s) 397
BclI TGATCA 1 cut(s) 306
BcnI CCSGG 1 cut(s) 205
BglII AGATCT 1 cut(s) 134
Bme1390I CCNGG 2 cut(s) 205, 397
BmrFI CCNGG 2 cut(s) 205, 397
Bpu10I CCTNAGC 1 cut(s) 338
BpuMI CCSGG 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 395
BseBI CCWGG 1 cut(s) 397
BseDI CCNNGG 1 cut(s) 395
BseMII CTCAG 2 cut(s) 249, 329
BshFI GGCC 1 cut(s) 318
BsiSI CCGG 1 cut(s) 204
BslFI GGGAC 2 cut(s) 220, 378
BsmFI GGGAC 2 cut(s) 220, 378
BsnI GGCC 1 cut(s) 318
Bsp143I GATC 4 cut(s) 100, 134, 244, 306
BspANI GGCC 1 cut(s) 318
BspCNI CTCAG 2 cut(s) 250, 330
BspPI GGATC 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 395
BssMI GATC 4 cut(s) 100, 134, 244, 306
Bst2UI CCWGG 1 cut(s) 397
Bst4CI ACNGT 3 cut(s) 57, 93, 180
BstC8I GCNNGC 1 cut(s) 217
BstDEI CTNAG 2 cut(s) 258, 338
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 4 cut(s) 103, 137, 247, 309
BstMBI GATC 4 cut(s) 100, 134, 244, 306
BstNI CCWGG 1 cut(s) 397
BstNSI RCATGY 1 cut(s) 169
BstSCI CCNGG 2 cut(s) 203, 395
BstX2I RGATCY 2 cut(s) 100, 134
BstYI RGATCY 2 cut(s) 100, 134
BsuRI GGCC 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 217
CfoI GCGC 1 cut(s) 215
Csp6I GTAC 2 cut(s) 53, 144
CviAII CATG 4 cut(s) 25, 166, 253, 331
CviJI RGCY 3 cut(s) 29, 219, 318
CviKI_1 RGCY 3 cut(s) 29, 219, 318
CviQI GTAC 2 cut(s) 53, 144
DdeI CTNAG 2 cut(s) 258, 338
DpnI GATC 4 cut(s) 102, 136, 246, 308
DpnII GATC 4 cut(s) 100, 134, 244, 306
DraIII CACNNNGTG 1 cut(s) 334
EaeI YGGCCR 1 cut(s) 316
EcoRII CCWGG 1 cut(s) 395
FaeI CATG 4 cut(s) 28, 169, 256, 334
FaiI YATR 9 cut(s) 26, 161, 167, 254, 275, 311, 313, 315, 332
FaqI GGGAC 2 cut(s) 220, 378
FatI CATG 4 cut(s) 24, 165, 252, 330
FbaI TGATCA 1 cut(s) 306
GlaI GCGC 1 cut(s) 214
HaeIII GGCC 1 cut(s) 318
HapII CCGG 1 cut(s) 204
HhaI GCGC 1 cut(s) 215
Hin1II CATG 4 cut(s) 28, 169, 256, 334
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HinfI GANTC 4 cut(s) 119, 262, 343, 400
HpaII CCGG 1 cut(s) 204
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 22, 183
Hpy188I TCNGA 4 cut(s) 141, 259, 300, 357
Hpy8I GTNNAC 2 cut(s) 22, 183
HpyCH4III ACNGT 3 cut(s) 57, 93, 180
HpyCH4IV ACGT 3 cut(s) 18, 47, 125
HpyCH4V TGCA 1 cut(s) 131
HpyF3I CTNAG 2 cut(s) 258, 338
HpySE526I ACGT 3 cut(s) 18, 47, 125
Hsp92II CATG 4 cut(s) 28, 169, 256, 334
HspAI GCGC 1 cut(s) 213
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 4 cut(s) 100, 134, 244, 306
LpnPI CCDG 4 cut(s) 201, 217, 382, 409
MaeII ACGT 3 cut(s) 18, 47, 125
MaeIII GTNAC 1 cut(s) 326
MalI GATC 4 cut(s) 102, 136, 246, 308
MboI GATC 4 cut(s) 100, 134, 244, 306
MboII GAAGA 2 cut(s) 16, 257
MflI RGATCY 2 cut(s) 100, 134
MlsI TGGCCA 1 cut(s) 318
MluNI TGGCCA 1 cut(s) 318
MnlI CCTC 3 cut(s) 279, 333, 391
Mox20I TGGCCA 1 cut(s) 318
MroXI GAANNNNTTC 1 cut(s) 192
MscI TGGCCA 1 cut(s) 318
MseI TTAA 3 cut(s) 171, 405, 445
Msp20I TGGCCA 1 cut(s) 318
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 2 cut(s) 205, 397
MvaI CCWGG 1 cut(s) 397
NciI CCSGG 1 cut(s) 205
NdeII GATC 4 cut(s) 100, 134, 244, 306
NlaIII CATG 4 cut(s) 28, 169, 256, 334
NmuCI GTSAC 1 cut(s) 326
NspI RCATGY 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 4 cut(s) 119, 262, 343, 400
Psp6I CCWGG 1 cut(s) 395
PspGI CCWGG 1 cut(s) 395
PsuI RGATCY 2 cut(s) 100, 134
RsaI GTAC 2 cut(s) 54, 145
RsaNI GTAC 2 cut(s) 53, 144
SaqAI TTAA 3 cut(s) 171, 405, 445
Sau3AI GATC 4 cut(s) 100, 134, 244, 306
ScrFI CCNGG 2 cut(s) 205, 397
SetI ASST 5 cut(s) 21, 50, 128, 290, 391
SspI AATATT 1 cut(s) 109
StyD4I CCNGG 2 cut(s) 203, 395
TaaI ACNGT 3 cut(s) 57, 93, 180
TaiI ACGT 3 cut(s) 21, 50, 128
TaqI TCGA 1 cut(s) 284
TfiI GAWTC 4 cut(s) 119, 262, 343, 400
Tru1I TTAA 3 cut(s) 171, 405, 445
Tru9I TTAA 3 cut(s) 171, 405, 445
TseFI GTSAC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 1 cut(s) 17
XceI RCATGY 1 cut(s) 169
XmnI GAANNNNTTC 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.