AT1G47470

Contains the following InterPro domains Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000474
Physical Location & Seq
Reverse (-)
17414547 .. 17415150
604 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47470.1

Sequence Viewer

Length: 522 bp
ATGACAAAATCTCTACTCATGGTAACGCTCGTGTCTATTGTAATGTTTTACATGGCTCGTCCAATTTTCTCCCAAGAAATTGATCCATATTCACAGGAGGTGCCAAAAGATGTGGCCATATCTCCATCTTCAAAGTTTGATATTTACGTCGAAGCTCCTGGTGAAGCTCCATTCGAAGAAGCTGATTCACCCGCAATGGAATATGATAGGGAGCTTGCTCACCATTACTCGCATAAACAGCTCGATTTTCTTGAGGCTTGCTCTGAAAAGCCAAGCTCAAAATGCGGAAATGAGGTTTTCAAGAACATGTTAGATGAGACAGTGCCAATTACAGATGAATGTTGTCGTGATATATTGAAGATCGGAAAAGATTGCCATCTCGGATTGGTTAAACTCATATTCGCCACATATGAGTATAAAAATAAAGCATCTAAAGGCATTCCAAAGAGCAAACAAACATGGAACGAATGTGTCTTTAGAGTAGGGAGCAAGATTGGTGCTCCGGTCTCTTTTGAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

173

Amino Acids

19.54

Weight (kDa)

5.27

Isoelectric Point (pI)

55.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 87 - 158 1.7e-18 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca FvH4_3g40551
malus_domestica MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis pycom16g22710
rosa_chinensis RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AciI CCGC 2 cut(s) 192, 285
AclWI GGATC 1 cut(s) 77
AcoI YGGCCR 1 cut(s) 114
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 4 cut(s) 132, 301, 358, 515
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 6 cut(s) 155, 167, 182, 214, 241, 276
AluI AGCT 6 cut(s) 155, 167, 182, 214, 241, 276
Alw21I GWGCWC 1 cut(s) 502
Alw26I GTCTC 2 cut(s) 311, 511
AlwI GGATC 1 cut(s) 77
AoxI GGCC 1 cut(s) 114
AsuHPI GGTGA 3 cut(s) 173, 180, 212
AsuII TTCGAA 1 cut(s) 174
BalI TGGCCA 1 cut(s) 116
BanI GGYRCC 1 cut(s) 100
BauI CACGAG 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 502
BccI CCATC 2 cut(s) 133, 384
BciT130I CCWGG 1 cut(s) 159
BcoDI GTCTC 2 cut(s) 311, 511
Bme1390I CCNGG 1 cut(s) 159
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 1 cut(s) 437
BplI GAGNNNNNCTC 2 cut(s) 245, 277
Bpu14I TTCGAA 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 272
BsaBI GATNNNNATC 1 cut(s) 375
BsaI GGTCTC 1 cut(s) 511
BsaWI WCCGGW 1 cut(s) 502
Bse3DI GCAATG 1 cut(s) 201
Bse8I GATNNNNATC 1 cut(s) 375
BseBI CCWGG 1 cut(s) 159
BseJI GATNNNNATC 1 cut(s) 375
BseMI GCAATG 1 cut(s) 201
BshFI GGCC 1 cut(s) 116
BshNI GGYRCC 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 502
BsiSI CCGG 1 cut(s) 503
BsmAI GTCTC 2 cut(s) 311, 511
BsmI GAATGC 1 cut(s) 438
BsnI GGCC 1 cut(s) 116
Bso31I GGTCTC 1 cut(s) 511
Bsp119I TTCGAA 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 502
Bsp143I GATC 2 cut(s) 82, 360
BspACI CCGC 2 cut(s) 192, 285
BspANI GGCC 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 1 cut(s) 77
BspT104I TTCGAA 1 cut(s) 174
BspT107I GGYRCC 1 cut(s) 100
BspTNI GGTCTC 1 cut(s) 511
BsrDI GCAATG 1 cut(s) 201
BssMI GATC 2 cut(s) 82, 360
BssSI CACGAG 1 cut(s) 29
Bst2BI CACGAG 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 2 cut(s) 322, 519
BstBI TTCGAA 1 cut(s) 174
BstC8I GCNNGC 2 cut(s) 216, 259
BstKTI GATC 2 cut(s) 85, 363
BstMAI GTCTC 2 cut(s) 311, 511
BstMBI GATC 2 cut(s) 82, 360
BstMWI GCNNNNNNNGC 2 cut(s) 238, 282
BstNI CCWGG 1 cut(s) 159
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 157
BsuRI GGCC 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 2 cut(s) 216, 259
CspCI CAANNNNNGTGG 2 cut(s) 93, 128
CviAII CATG 4 cut(s) 19, 52, 307, 459
DpnI GATC 2 cut(s) 84, 362
DpnII GATC 2 cut(s) 82, 360
EaeI YGGCCR 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 511
EcoRII CCWGG 1 cut(s) 157
FaeI CATG 4 cut(s) 22, 55, 310, 462
FatI CATG 4 cut(s) 18, 51, 306, 458
FauI CCCGC 1 cut(s) 199
FauNDI CATATG 1 cut(s) 409
HaeIII GGCC 1 cut(s) 116
HapII CCGG 1 cut(s) 503
Hin1II CATG 4 cut(s) 22, 55, 310, 462
HinfI GANTC 1 cut(s) 185
HpaII CCGG 1 cut(s) 503
HphI GGTGA 3 cut(s) 173, 180, 212
Hpy188I TCNGA 3 cut(s) 265, 365, 383
Hpy188III TCNNGA 3 cut(s) 251, 301, 347
Hpy99I CGWCG 1 cut(s) 152
HpyCH4III ACNGT 2 cut(s) 322, 519
HpyCH4IV ACGT 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 282
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 4 cut(s) 22, 55, 310, 462
Kzo9I GATC 2 cut(s) 82, 360
LmnI GCTCC 5 cut(s) 160, 172, 211, 486, 505
LpnPI CCDG 4 cut(s) 80, 144, 171, 516
LweI GCATC 1 cut(s) 437
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 22
MalI GATC 2 cut(s) 84, 362
MboI GATC 2 cut(s) 82, 360
MboII GAAGA 3 cut(s) 120, 188, 370
MhlI GDGCHC 1 cut(s) 502
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 3 cut(s) 63, 78, 327
MluNI TGGCCA 1 cut(s) 116
MnlI CCTC 3 cut(s) 91, 247, 286
Mox20I TGGCCA 1 cut(s) 116
MscI TGGCCA 1 cut(s) 116
MseI TTAA 1 cut(s) 390
Msp20I TGGCCA 1 cut(s) 116
MspI CCGG 1 cut(s) 503
MspR9I CCNGG 1 cut(s) 159
Mva1269I GAATGC 1 cut(s) 438
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 238, 282
NdeI CATATG 1 cut(s) 409
NdeII GATC 2 cut(s) 82, 360
NlaIII CATG 4 cut(s) 22, 55, 310, 462
NlaIV GGNNCC 1 cut(s) 102
NspI RCATGY 1 cut(s) 310
NspV TTCGAA 1 cut(s) 174
PciI ACATGT 1 cut(s) 306
PctI GAATGC 1 cut(s) 438
PfeI GAWTC 1 cut(s) 185
PscI ACATGT 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 390
Sau3AI GATC 2 cut(s) 82, 360
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 1 cut(s) 502
SetI ASST 9 cut(s) 102, 150, 157, 169, 184, 216, 243, 278, 297
SfaNI GCATC 1 cut(s) 437
SfuI TTCGAA 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 3 cut(s) 63, 78, 327
SsiI CCGC 2 cut(s) 192, 285
StyD4I CCNGG 1 cut(s) 157
TaaI ACNGT 2 cut(s) 322, 519
TaiI ACGT 1 cut(s) 150
TaqI TCGA 3 cut(s) 150, 174, 243
TasI AATT 3 cut(s) 63, 78, 327
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 1 cut(s) 327
TspDTI ATGAA 1 cut(s) 351
TspRI CASTG 1 cut(s) 327
XceI RCATGY 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.