Rh7AG239000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000474
Physical Location & Seq
Reverse (-)
23401104 .. 23401911
808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG239000.1

Sequence Viewer

Length: 216 bp
ATGGCGTGTCGAAAGCTGCGCAGACAGAAAAAAGAGAGACAGAGAGGGGTTTTCTTCTCTTCTACCGGCCAGCAGTGCATCAGTTTGCCTGACGTGCACAGAAAAAAGAAGAAGAGGGGGACGAGAAGAAGAAGAGGAACTGGATCAACGCTTGCTAATCAAATCATCAAGCCTGCAGGAGTGCTATCAATTATTCTTTGTTTAAGCATTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.02

Weight (kDa)

11.94

Isoelectric Point (pI)

64.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca FvH4_3g40551
malus_domestica MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis pycom16g22710
rosa_chinensis RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 20
AclWI GGATC 1 cut(s) 151
AcoI YGGCCR 1 cut(s) 67
AjiI CACGTC 1 cut(s) 94
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 1 cut(s) 31
Alw44I GTGCAC 1 cut(s) 95
AlwI GGATC 1 cut(s) 151
AoxI GGCC 1 cut(s) 67
ApaLI GTGCAC 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 16
AspLEI GCGC 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 31
BfmI CTRYAG 1 cut(s) 174
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
BmgBI CACGTC 1 cut(s) 94
BmsI GCATC 1 cut(s) 87
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 145
BseNI ACTGG 1 cut(s) 145
BseSI GKGCMC 1 cut(s) 99
BseXI GCAGC 1 cut(s) 3
BshFI GGCC 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 99
BsiSI CCGG 1 cut(s) 66
BslFI GGGAC 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 1 cut(s) 143
BspANI GGCC 1 cut(s) 69
BspMAI CTGCAG 1 cut(s) 178
BspPI GGATC 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 1 cut(s) 145
BssAI RCCGGY 1 cut(s) 65
BssMI GATC 1 cut(s) 143
Bst6I CTCTTC 3 cut(s) 64, 107, 127
BstC8I GCNNGC 3 cut(s) 71, 153, 174
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 1 cut(s) 146
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 1 cut(s) 143
BstMWI GCNNNNNNNGC 2 cut(s) 75, 94
BstSFI CTRYAG 1 cut(s) 174
BstSLI GKGCMC 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 3
BsuRI GGCC 1 cut(s) 69
BtrI CACGTC 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 80
Cac8I GCNNGC 3 cut(s) 71, 153, 174
CfoI GCGC 1 cut(s) 21
Cfr10I RCCGGY 1 cut(s) 65
CviJI RGCY 4 cut(s) 16, 69, 172, 213
CviKI_1 RGCY 4 cut(s) 16, 69, 172, 213
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 3 cut(s) 64, 107, 127
EarI CTCTTC 3 cut(s) 64, 107, 127
FaqI GGGAC 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 17
FspI TGCGCA 1 cut(s) 20
GlaI GCGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 17
HaeIII GGCC 1 cut(s) 69
HapII CCGG 1 cut(s) 66
HhaI GCGC 1 cut(s) 21
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HpaII CCGG 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 97
Hpy8I GTNNAC 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 3 cut(s) 78, 97, 176
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 94
HpySE526I ACGT 1 cut(s) 93
HspAI GCGC 1 cut(s) 19
Kzo9I GATC 1 cut(s) 143
LpnPI CCDG 6 cut(s) 79, 83, 102, 126, 162, 186
Lsp1109I GCAGC 1 cut(s) 3
LweI GCATC 1 cut(s) 87
MaeII ACGT 1 cut(s) 93
MalI GATC 1 cut(s) 145
MboI GATC 1 cut(s) 143
MboII GAAGA 7 cut(s) 46, 51, 121, 124, 138, 141, 144
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 1 cut(s) 189
MnlI CCTC 3 cut(s) 38, 108, 128
MseI TTAA 1 cut(s) 203
MspI CCGG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 75, 94
NdeII GATC 1 cut(s) 143
NsbI TGCGCA 1 cut(s) 20
PkrI GCNGC 1 cut(s) 18
PstI CTGCAG 1 cut(s) 178
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 1 cut(s) 17
Sau3AI GATC 1 cut(s) 143
SbfI CCTGCAGG 1 cut(s) 178
SdaI CCTGCAGG 1 cut(s) 178
SduI GDGCHC 1 cut(s) 99
SetI ASST 2 cut(s) 18, 96
SfaNI GCATC 1 cut(s) 87
SfcI CTRYAG 1 cut(s) 174
Sse8387I CCTGCAGG 1 cut(s) 178
Sse9I AATT 1 cut(s) 189
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 10
TasI AATT 1 cut(s) 189
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TscAI CASTG 1 cut(s) 80
TseI GCWGC 1 cut(s) 16
TspRI CASTG 1 cut(s) 80
VneI GTGCAC 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.