Rh2CG338100

ECA1 gametogenesis related family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000474
Physical Location & Seq
Reverse (-)
45004319 .. 45004636
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG338100.1

Sequence Viewer

Length: 318 bp
ATGGCAAGAGTTGATCAAAATGTGTTTGTCAAGGTGAGTTTGGTCTTAGCAAGTGTAGCACTATTCATGTCGTTTGCAGCAGCTCAAGACTTTGTTGCTTATGAAGTCTATAATGATGCCACAAGCCCTATAAGCGTTGAGGTTGAAGTCATTGATGCCTACCCTCCAATTTCTCCAGAAGACCAGGATGCTCTCCCTCCAGAACCATCACTGGGAGCTTACAAGAAGTTGAACAATTGCGCAAACAAGATTACAGCAGATTATGCGGAAGAGATCTACGATGGTATTTTCGAAGGCGAGCCTCTCACTACAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

105

Amino Acids

11.44

Weight (kDa)

4.05

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca FvH4_3g40551
malus_domestica MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis pycom16g22710
rosa_chinensis RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 241
AciI CCGC 1 cut(s) 266
AfiI CCNNNNNNNGG 1 cut(s) 212
AgsI TTSAA 2 cut(s) 146, 232
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 2 cut(s) 83, 218
AluI AGCT 2 cut(s) 83, 218
ApeKI GCWGC 2 cut(s) 77, 80
AspLEI GCGC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 46
AsuII TTCGAA 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 186
BbvI GCAGC 2 cut(s) 89, 92
BccI CCATC 2 cut(s) 214, 275
BciT130I CCWGG 1 cut(s) 185
BclI TGATCA 1 cut(s) 13
BfmI CTRYAG 1 cut(s) 309
BglII AGATCT 1 cut(s) 273
BisI GCNGC 2 cut(s) 78, 81
BlsI GCNGC 2 cut(s) 79, 82
Bme1390I CCNGG 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 185
BmrI ACTGGG 1 cut(s) 221
BmsI GCATC 3 cut(s) 106, 145, 178
BmuI ACTGGG 1 cut(s) 221
BpiI GAAGAC 1 cut(s) 186
BpmI CTGGAG 2 cut(s) 159, 183
Bpu14I TTCGAA 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 185
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 216
BseXI GCAGC 2 cut(s) 89, 92
BslI CCNNNNNNNGG 1 cut(s) 212
Bsp119I TTCGAA 1 cut(s) 291
Bsp143I GATC 2 cut(s) 13, 273
BspACI CCGC 1 cut(s) 266
BspT104I TTCGAA 1 cut(s) 291
BsrI ACTGG 1 cut(s) 216
BssMI GATC 2 cut(s) 13, 273
Bst2UI CCWGG 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 264
BstAPI GCANNNNNTGC 1 cut(s) 263
BstBI TTCGAA 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 1 cut(s) 46
BstF5I GGATG 1 cut(s) 193
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 2 cut(s) 16, 276
BstMBI GATC 2 cut(s) 13, 273
BstMWI GCNNNNNNNGC 3 cut(s) 56, 132, 263
BstNI CCWGG 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 183
BstSFI CTRYAG 1 cut(s) 309
BstV1I GCAGC 2 cut(s) 89, 92
BstV2I GAAGAC 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 299
CfoI GCGC 1 cut(s) 242
CviAII CATG 1 cut(s) 67
CviJI RGCY 4 cut(s) 83, 126, 218, 301
CviKI_1 RGCY 4 cut(s) 83, 126, 218, 301
DdeI CTNAG 1 cut(s) 46
DpnI GATC 2 cut(s) 15, 275
DpnII GATC 2 cut(s) 13, 273
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 183
FaeI CATG 1 cut(s) 70
FaiI YATR 5 cut(s) 68, 102, 111, 131, 264
FatI CATG 1 cut(s) 66
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 2 cut(s) 78, 81
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 2 cut(s) 78, 81
FspI TGCGCA 1 cut(s) 241
GlaI GCGC 1 cut(s) 241
GluI GCNGC 2 cut(s) 78, 81
GsuI CTGGAG 2 cut(s) 159, 183
HhaI GCGC 1 cut(s) 242
Hin1II CATG 1 cut(s) 70
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HphI GGTGA 1 cut(s) 46
Hpy188III TCNNGA 3 cut(s) 86, 176, 200
HpyAV CCTTC 1 cut(s) 287
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 132, 263
HpyF3I CTNAG 1 cut(s) 46
Hsp92II CATG 1 cut(s) 70
HspAI GCGC 1 cut(s) 240
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 2 cut(s) 13, 273
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 5 cut(s) 170, 189, 197, 197, 213
Lsp1109I GCAGC 2 cut(s) 89, 92
LweI GCATC 3 cut(s) 106, 145, 178
MalI GATC 2 cut(s) 15, 275
MboI GATC 2 cut(s) 13, 273
MboII GAAGA 2 cut(s) 191, 281
MfeI CAATTG 1 cut(s) 235
MflI RGATCY 1 cut(s) 273
MluCI AATT 2 cut(s) 168, 235
MnlI CCTC 4 cut(s) 133, 174, 207, 312
MspR9I CCNGG 1 cut(s) 185
MunI CAATTG 1 cut(s) 235
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 3 cut(s) 56, 132, 263
NdeII GATC 2 cut(s) 13, 273
NlaIII CATG 1 cut(s) 70
NsbI TGCGCA 1 cut(s) 241
NspV TTCGAA 1 cut(s) 291
PkrI GCNGC 2 cut(s) 79, 82
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PsuI RGATCY 1 cut(s) 273
SatI GCNGC 2 cut(s) 78, 81
Sau3AI GATC 2 cut(s) 13, 273
ScrFI CCNGG 1 cut(s) 185
SetI ASST 4 cut(s) 36, 85, 144, 220
SfaNI GCATC 3 cut(s) 106, 145, 178
SfcI CTRYAG 1 cut(s) 309
SfuI TTCGAA 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 2 cut(s) 168, 235
SsiI CCGC 1 cut(s) 266
StyD4I CCNGG 1 cut(s) 183
TaqI TCGA 1 cut(s) 291
TasI AATT 2 cut(s) 168, 235
TscAI CASTG 1 cut(s) 216
TseI GCWGC 2 cut(s) 77, 80
TspDTI ATGAA 2 cut(s) 55, 117
TspRI CASTG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.