Rmu_sc0001887.1_g000017

ECA1 gametogenesis related family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001887.1
OG0000474
Physical Location & Seq
Forward (+)
82049 .. 82381
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001887.1_g000017.1.cds

Sequence Viewer

Length: 333 bp
atgttccgtggatattatgacaatttagaccaatgtgaagacaacttcaacctaaattgtgttaaagagatttaccgcggcatgttcaaaaccgagcctcttaataagaactgttgcaagaaccttgtgcagatgggatatggctgtcacagtaggttagcgaaatttgcgaacccgagaaacaaagaaaaagcttccatggcattggctaagagtgtgcagatttggcaaaagtgtgtctcagttgttgaactggtcgattccttgctgttcctgctcctttctaatctcatcttgttgtatatcagtatatcacagaatttgaattggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

110

Amino Acids

12.76

Weight (kDa)

8.77

Isoelectric Point (pI)

22.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca FvH4_3g40551
malus_domestica MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis pycom16g22710
rosa_chinensis RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 78
AciI CCGC 2 cut(s) 76, 78
AcsI RAATTY 2 cut(s) 164, 319
AgsI TTSAA 4 cut(s) 49, 88, 251, 325
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw26I GTCTC 1 cut(s) 244
Ama87I CYCGRG 1 cut(s) 175
ApoI RAATTY 2 cut(s) 164, 319
AvaI CYCGRG 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 45
BccI CCATC 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 244
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
BmeT110I CYCGRG 1 cut(s) 175
BpiI GAAGAC 1 cut(s) 45
BsaJI CCNNGG 3 cut(s) 7, 76, 198
Bse1I ACTGG 1 cut(s) 258
BseDI CCNNGG 3 cut(s) 7, 76, 198
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 258
BsgI GTGCAG 2 cut(s) 149, 239
Bsh1236I CGCG 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 244
BsoBI CYCGRG 1 cut(s) 175
Bsp19I CCATGG 1 cut(s) 198
BspACI CCGC 2 cut(s) 76, 78
BspCNI CTCAG 1 cut(s) 254
BspFNI CGCG 1 cut(s) 78
BsrI ACTGG 1 cut(s) 258
BssECI CCNNGG 3 cut(s) 7, 76, 198
BssT1I CCWWGG 1 cut(s) 198
Bst4CI ACNGT 2 cut(s) 113, 152
BstDEI CTNAG 2 cut(s) 210, 241
BstDSI CCRYGG 3 cut(s) 7, 76, 198
BstFNI CGCG 1 cut(s) 78
BstMAI GTCTC 1 cut(s) 244
BstMWI GCNNNNNNNGC 4 cut(s) 167, 200, 226, 274
BstNSI RCATGY 1 cut(s) 85
BstUI CGCG 1 cut(s) 78
BstV2I GAAGAC 1 cut(s) 45
BstXI CCANNNNNNTGG 1 cut(s) 205
BtgI CCRYGG 3 cut(s) 7, 76, 198
Cfr42I CCGCGG 1 cut(s) 79
CviAII CATG 2 cut(s) 82, 199
CviJI RGCY 4 cut(s) 97, 144, 194, 209
CviKI_1 RGCY 4 cut(s) 97, 144, 194, 209
DdeI CTNAG 2 cut(s) 210, 241
Eco130I CCWWGG 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 2 cut(s) 85, 202
FaiI YATR 6 cut(s) 18, 83, 141, 200, 303, 311
FatI CATG 2 cut(s) 81, 198
Fnu4HI GCNGC 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 79
GluI GCNGC 1 cut(s) 79
Hin1II CATG 2 cut(s) 85, 202
HindIII AAGCTT 1 cut(s) 192
HinfI GANTC 1 cut(s) 260
HpyCH4III ACNGT 2 cut(s) 113, 152
HpyCH4V TGCA 3 cut(s) 117, 130, 220
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 200, 226, 274
HpyF3I CTNAG 2 cut(s) 210, 241
Hsp92II CATG 2 cut(s) 85, 202
KspI CCGCGG 1 cut(s) 79
LmnI GCTCC 1 cut(s) 282
LpnPI CCDG 2 cut(s) 239, 287
MaeIII GTNAC 1 cut(s) 146
MboII GAAGA 1 cut(s) 50
MluCI AATT 5 cut(s) 22, 55, 164, 319, 325
MnlI CCTC 1 cut(s) 108
MseI TTAA 2 cut(s) 63, 102
MspA1I CMGCKG 1 cut(s) 78
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 4 cut(s) 167, 200, 226, 274
NcoI CCATGG 1 cut(s) 198
NlaIII CATG 2 cut(s) 85, 202
NmuCI GTSAC 1 cut(s) 146
NspI RCATGY 1 cut(s) 85
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 1 cut(s) 80
SacII CCGCGG 1 cut(s) 79
SaqAI TTAA 2 cut(s) 63, 102
SatI GCNGC 1 cut(s) 79
SetI ASST 4 cut(s) 54, 126, 158, 196
Sfr303I CCGCGG 1 cut(s) 79
SgrBI CCGCGG 1 cut(s) 79
Sse9I AATT 5 cut(s) 22, 55, 164, 319, 325
SsiI CCGC 2 cut(s) 76, 78
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 2 cut(s) 113, 152
TaqI TCGA 1 cut(s) 258
TasI AATT 5 cut(s) 22, 55, 164, 319, 325
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 2 cut(s) 63, 102
Tru9I TTAA 2 cut(s) 63, 102
TseFI GTSAC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 146
XapI RAATTY 2 cut(s) 164, 319
XceI RCATGY 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.