AT3G29797

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000474
Physical Location & Seq
Forward (+)
11717591 .. 11718128
538 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G29797.1

Sequence Viewer

Length: 471 bp
ATGGAGAATAAAACCATGTTCATCCTATTTTCTTCGATCATGGTTTTGCTATCGTTTTCTCATCTAACTTTGGCCAAAGAAGGCGATAATGACAAGCCACTCCTCATTTCAGACGACGAGTTTAATGCGATGATTGCAAGGTCACCGACAGCGAACGATTATAACGATAATGTTGGTCGTACATATTCAAAGAAACAAAAAAAATATCTTCTAAACTGCAGTAAAAAGATGGACGTCCCAGACAAATGTATAGAAGAAGTGTTGGCTGAAATTATTCAGAACAAAAGTGCTTCAAGGGATTGTTGTTTAGGGATAGTGAAAGCTGGAAAGGAATGTCACATGGAATATATGAAATTATTTTTTCAAATCTATCAACTTAGACGTTTTACTTCTAAAAGGTTTTCCAAAGCTAATGAAATATGGAACAGATGTTTCACTGAAATTGGAGCTGTTTCACCGTATTCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

156

Amino Acids

17.95

Weight (kDa)

8.69

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 72 - 144 8.1e-17 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca FvH4_3g40551
malus_domestica MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis pycom16g22710
rosa_chinensis RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
AatII GACGTC 1 cut(s) 237
AcoI YGGCCR 1 cut(s) 72
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 1 cut(s) 464
AgsI TTSAA 3 cut(s) 189, 294, 365
AluBI AGCT 3 cut(s) 323, 410, 449
AluI AGCT 3 cut(s) 323, 410, 449
AoxI GGCC 1 cut(s) 72
Asp700I GAANNNNTTC 1 cut(s) 273
AsuHPI GGTGA 2 cut(s) 135, 447
BalI TGGCCA 1 cut(s) 74
BccI CCATC 1 cut(s) 223
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BfmI CTRYAG 1 cut(s) 217
BsaHI GRCGYC 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 464
BseGI GGATG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 464
BseRI GAGGAG 1 cut(s) 92
BshFI GGCC 1 cut(s) 74
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 464
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 1 cut(s) 74
Bsp143I GATC 1 cut(s) 36
BspANI GGCC 1 cut(s) 74
BspMAI CTGCAG 1 cut(s) 221
BssMI GATC 1 cut(s) 36
BssNI GRCGYC 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 459
BstACI GRCGYC 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 377
BstEII GGTNACC 1 cut(s) 141
BstF5I GGATG 1 cut(s) 21
BstKTI GATC 1 cut(s) 39
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstPI GGTNACC 1 cut(s) 141
BstSFI CTRYAG 1 cut(s) 217
BsuRI GGCC 1 cut(s) 74
BtgZI GCGATG 1 cut(s) 143
BtsCI GGATG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 435
Csp6I GTAC 1 cut(s) 180
CviAII CATG 3 cut(s) 16, 40, 340
CviJI RGCY 6 cut(s) 74, 97, 266, 323, 410, 449
CviKI_1 RGCY 6 cut(s) 74, 97, 266, 323, 410, 449
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 1 cut(s) 377
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
EaeI YGGCCR 1 cut(s) 72
Eco91I GGTNACC 1 cut(s) 141
EcoO65I GGTNACC 1 cut(s) 141
FaeI CATG 3 cut(s) 19, 43, 343
FaiI YATR 9 cut(s) 17, 41, 162, 184, 251, 341, 348, 350, 421
FaqI GGGAC 1 cut(s) 221
FatI CATG 3 cut(s) 15, 39, 339
FokI GGATG 1 cut(s) 8
HaeIII GGCC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 3 cut(s) 19, 43, 343
HphI GGTGA 2 cut(s) 135, 447
Hpy188I TCNGA 2 cut(s) 112, 279
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 1 cut(s) 459
HpyCH4IV ACGT 2 cut(s) 234, 382
HpyCH4V TGCA 2 cut(s) 137, 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 377
HpySE526I ACGT 2 cut(s) 234, 382
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 3 cut(s) 19, 43, 343
Kzo9I GATC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 446
LpnPI CCDG 3 cut(s) 252, 309, 450
MaeII ACGT 2 cut(s) 234, 382
MaeIII GTNAC 2 cut(s) 141, 335
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 3 cut(s) 24, 200, 266
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 3 cut(s) 270, 353, 441
MluNI TGGCCA 1 cut(s) 74
MnlI CCTC 1 cut(s) 113
Mox20I TGGCCA 1 cut(s) 74
MroXI GAANNNNTTC 1 cut(s) 273
MscI TGGCCA 1 cut(s) 74
MseI TTAA 2 cut(s) 123, 469
Msp20I TGGCCA 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 1 cut(s) 36
NlaIII CATG 3 cut(s) 19, 43, 343
NmuCI GTSAC 2 cut(s) 141, 335
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PdmI GAANNNNTTC 1 cut(s) 273
PsiI TTATAA 1 cut(s) 162
PspEI GGTNACC 1 cut(s) 141
PstI CTGCAG 1 cut(s) 221
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
SaqAI TTAA 2 cut(s) 123, 469
Sau3AI GATC 1 cut(s) 36
SetI ASST 7 cut(s) 143, 237, 325, 385, 401, 412, 451
SfcI CTRYAG 1 cut(s) 217
SgeI CNNG 9 cut(s) 28, 52, 106, 130, 150, 251, 306, 336, 352
Sse9I AATT 3 cut(s) 270, 353, 441
TaaI ACNGT 1 cut(s) 459
TaiI ACGT 2 cut(s) 237, 385
TaqI TCGA 1 cut(s) 35
TasI AATT 3 cut(s) 270, 353, 441
Tru1I TTAA 2 cut(s) 123, 469
Tru9I TTAA 2 cut(s) 123, 469
TscAI CASTG 1 cut(s) 442
TseFI GTSAC 2 cut(s) 141, 335
Tsp45I GTSAC 2 cut(s) 141, 335
TspDTI ATGAA 3 cut(s) 10, 365, 429
TspRI CASTG 1 cut(s) 442
XmnI GAANNNNTTC 1 cut(s) 273
ZraI GACGTC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.