Rmu_sc0008365.1_g000002

ECA1 gametogenesis related family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008365.1
OG0000474
Physical Location & Seq
Forward (+)
25924 .. 30759
4836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008365.1_g000002.1.cds

Sequence Viewer

Length: 1518 bp
atggcaagagttgatcaaaatgtgtttgtcaaggtgagtttggtatcactattcatgtcgtttgcagcagctcaaggctttgttgcttatgaagtctataatgatgccacaagccctataagcgttgaggttgaagtcattgatgcctaccctccaatttctccagaagaccaggatgctctccctccagaaccatcaccgggagcttacaagaagttgaagaattgtgcaaacaagattacagcagattatgccgaagagatctacgaaggtattttcgaaggcgagcctctcactacagattgctgcaaagcccttgtgcatctgggatatgattgtcacatccataagctttgcatcggcgctggctcttctgggcgacgatgtggtggatatctccaagatgccgggagtggataccaggcaaggttctcaagcttacctccttgcaccgcctcacacttcgaagccgtttacgacgttctgctggttttaagtaagctttgcatcggcgctggctcttctgggcgacgatgtggtggatatctccgagatgccgggagtggataccaggcaaggttctcaagcttacctccttgcaccgcctcacacttcgaagccgtttacgacgttggatttgcaacgacatttccaacgtgtaggaacgctcaaccgagctttgatcccaaacggttcgaaaacaagatggagctacctagttcttttgcaggttttgcgcaatgcaatttcaataaagtaagctttgcatcggcgctggctcttctgggcgacgatgtggtggatatctccgagatgccgggagtggataccaggcaaggttctcaagcttacctccttgcaccgcctcacacttcgaagccgtttacgacgttggatttgcaacgacatttccaacgtcatgctccggtcatcattcatgattatgatggcttgaaatctcccactgctattcagatggatgaattgttcttttgggtaaagatacggaacataccaccggccttggaggtaaagaacacaattgtaaacgttgcttcgattgcaggaagtttcttggagtgggatgacaaactcttcaaagcaacaggtgacattagggttcatgtcgcacaccatattgccaaacctttcttcttgacaaaaaccctaaagctagtgtcgggggtcattgaggaaatctcttttttctttgagactttgagaatctgcttgggtgttgtcgggattacaacctcatttttcatgagaatggggagtgccagtatgcaggtaggaacgctcaaccgagctttgatcccaaacggttcgaaaacaagatggagctacctagttcttttgcaggttttgcgcaatgcaatttcaataaaggtacattttgctttcagggtatccagatgcccatttttcctcctgtggcacagtgtttgtttggttctggttcttcctccaggctatgcaaacctatgcttctccgtcatgcaaatctgtaggcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

505

Amino Acids

55.59

Weight (kDa)

7.19

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca FvH4_3g40551
malus_domestica MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis pycom16g22710
rosa_chinensis RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 738, 1370
Acc36I ACCTGC 3 cut(s) 719, 1279, 1351
AciI CCGC 3 cut(s) 453, 603, 863
AclI AACGTT 1 cut(s) 1050
AclWI GGATC 2 cut(s) 677, 1309
AfaI GTAC 1 cut(s) 1392
AfiI CCNNNNNNNGG 1 cut(s) 200
AflIII ACRYGT 1 cut(s) 656
AgsI TTSAA 6 cut(s) 134, 220, 751, 955, 1099, 1383
AjnI CCWGG 5 cut(s) 171, 420, 570, 830, 1468
AjuI GAANNNNNNNTTGG 2 cut(s) 1136, 1168
AloI GAACNNNNNNTCC 2 cut(s) 971, 1003
Alw26I GTCTC 1 cut(s) 1208
AlwI GGATC 2 cut(s) 677, 1309
AoxI GGCC 1 cut(s) 1020
ApeKI GCWGC 3 cut(s) 65, 68, 306
ArsI GACNNNNNNTTYG 4 cut(s) 620, 652, 880, 912
AspLEI GCGC 5 cut(s) 365, 515, 739, 775, 1371
AsuC2I CCSGG 4 cut(s) 201, 409, 559, 819
AsuHPI GGTGA 3 cut(s) 46, 189, 1121
AsuII TTCGAA 6 cut(s) 279, 465, 615, 696, 875, 1328
BbsI GAAGAC 1 cut(s) 174
BbvI GCAGC 3 cut(s) 77, 80, 293
BccI CCATC 5 cut(s) 202, 700, 941, 970, 1332
BceAI ACGGC 3 cut(s) 455, 605, 865
BciT130I CCWGG 5 cut(s) 173, 422, 572, 832, 1470
BciVI GTATCC 4 cut(s) 410, 560, 820, 1420
BclI TGATCA 1 cut(s) 13
BcnI CCSGG 4 cut(s) 201, 409, 559, 819
BcoDI GTCTC 1 cut(s) 1208
BfaI CTAG 3 cut(s) 717, 1175, 1349
BfmI CTRYAG 2 cut(s) 297, 1507
BfoI RGCGCY 3 cut(s) 366, 516, 776
BfuAI ACCTGC 3 cut(s) 719, 1279, 1351
BfuI GTATCC 4 cut(s) 410, 560, 820, 1420
BglII AGATCT 1 cut(s) 261
BisI GCNGC 3 cut(s) 66, 69, 307
BlsI GCNGC 3 cut(s) 67, 70, 308
Bme1390I CCNGG 9 cut(s) 173, 201, 409, 422, 559, 572, 819, 832, 1470
BmrFI CCNGG 9 cut(s) 173, 201, 409, 422, 559, 572, 819, 832, 1470
BpiI GAAGAC 1 cut(s) 174
BplI GAGNNNNNCTC 2 cut(s) 1184, 1216
BpmI CTGGAG 3 cut(s) 147, 171, 1452
Bpu14I TTCGAA 6 cut(s) 279, 465, 615, 696, 875, 1328
BpuEI CTTGAG 4 cut(s) 57, 418, 568, 828
BpuMI CCSGG 4 cut(s) 201, 409, 559, 819
BsaJI CCNNGG 1 cut(s) 1023
BsaWI WCCGGW 1 cut(s) 925
BsaXI ACNNNNNCTCC 2 cut(s) 1267, 1297
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse118I RCCGGY 1 cut(s) 1018
Bse1I ACTGG 1 cut(s) 1281
Bse3DI GCAATG 2 cut(s) 746, 1378
BseBI CCWGG 5 cut(s) 173, 422, 572, 832, 1470
BseDI CCNNGG 1 cut(s) 1023
BseGI GGATG 4 cut(s) 181, 342, 985, 1090
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMI GCAATG 2 cut(s) 746, 1378
BseNI ACTGG 1 cut(s) 1281
BseXI GCAGC 3 cut(s) 77, 80, 293
BshFI GGCC 1 cut(s) 1022
BsiSI CCGG 6 cut(s) 200, 408, 558, 818, 926, 1019
BslI CCNNNNNNNGG 1 cut(s) 200
BsmAI GTCTC 1 cut(s) 1208
BsnI GGCC 1 cut(s) 1022
Bsp119I TTCGAA 6 cut(s) 279, 465, 615, 696, 875, 1328
Bsp143I GATC 4 cut(s) 13, 261, 682, 1314
BspACI CCGC 3 cut(s) 453, 603, 863
BspANI GGCC 1 cut(s) 1022
BspHI TCATGA 2 cut(s) 937, 1263
BspMI ACCTGC 3 cut(s) 719, 1279, 1351
BspPI GGATC 2 cut(s) 677, 1309
BspQI GCTCTTC 3 cut(s) 376, 526, 786
BspT104I TTCGAA 6 cut(s) 279, 465, 615, 696, 875, 1328
BsrDI GCAATG 2 cut(s) 746, 1378
BsrFI RCCGGY 1 cut(s) 1018
BsrI ACTGG 1 cut(s) 1281
BssAI RCCGGY 1 cut(s) 1018
BssECI CCNNGG 1 cut(s) 1023
BssMI GATC 4 cut(s) 13, 261, 682, 1314
BssT1I CCWWGG 1 cut(s) 1023
Bst2UI CCWGG 5 cut(s) 173, 422, 572, 832, 1470
Bst4CI ACNGT 3 cut(s) 693, 1325, 1442
Bst6I CTCTTC 5 cut(s) 252, 376, 526, 786, 1100
BstAPI GCANNNNNTGC 3 cut(s) 251, 734, 1366
BstBI TTCGAA 6 cut(s) 279, 465, 615, 696, 875, 1328
BstC8I GCNNGC 4 cut(s) 287, 367, 517, 777
BstF5I GGATG 4 cut(s) 181, 342, 985, 1090
BstH2I RGCGCY 3 cut(s) 366, 516, 776
BstHHI GCGC 5 cut(s) 365, 515, 739, 775, 1371
BstKTI GATC 4 cut(s) 16, 264, 685, 1317
BstMAI GTCTC 1 cut(s) 1208
BstMBI GATC 4 cut(s) 13, 261, 682, 1314
BstMWI GCNNNNNNNGC 5 cut(s) 120, 251, 734, 1061, 1366
BstNI CCWGG 5 cut(s) 173, 422, 572, 832, 1470
BstSCI CCNGG 9 cut(s) 171, 199, 407, 420, 557, 570, 817, 830, 1468
BstSFI CTRYAG 2 cut(s) 297, 1507
BstV1I GCAGC 3 cut(s) 77, 80, 293
BstV2I GAAGAC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
BsuI GTATCC 4 cut(s) 410, 560, 820, 1420
BsuRI GGCC 1 cut(s) 1022
BtsCI GGATG 4 cut(s) 181, 342, 985, 1090
BtsI GCAGTG 1 cut(s) 963
BtsIMutI CAGTG 2 cut(s) 963, 1447
BveI ACCTGC 3 cut(s) 719, 1279, 1351
Cac8I GCNNGC 4 cut(s) 287, 367, 517, 777
CciI TCATGA 2 cut(s) 937, 1263
CfoI GCGC 5 cut(s) 365, 515, 739, 775, 1371
Cfr10I RCCGGY 1 cut(s) 1018
Csp6I GTAC 1 cut(s) 1391
CspCI CAANNNNNGTGG 2 cut(s) 1005, 1040
CviAII CATG 6 cut(s) 55, 920, 938, 1124, 1264, 1498
CviQI GTAC 1 cut(s) 1391
DpnI GATC 4 cut(s) 15, 263, 684, 1316
DpnII GATC 4 cut(s) 13, 261, 682, 1314
Eam1104I CTCTTC 5 cut(s) 252, 376, 526, 786, 1100
EarI CTCTTC 5 cut(s) 252, 376, 526, 786, 1100
Eco130I CCWWGG 1 cut(s) 1023
Eco32I GATATC 3 cut(s) 395, 545, 805
EcoRII CCWGG 5 cut(s) 171, 420, 570, 830, 1468
EcoRV GATATC 3 cut(s) 395, 545, 805
EcoT14I CCWWGG 1 cut(s) 1023
ErhI CCWWGG 1 cut(s) 1023
FaeI CATG 6 cut(s) 58, 923, 941, 1127, 1267, 1501
FatI CATG 6 cut(s) 54, 919, 937, 1123, 1263, 1497
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 3 cut(s) 66, 69, 307
FokI GGATG 4 cut(s) 188, 329, 992, 1097
Fsp4HI GCNGC 3 cut(s) 66, 69, 307
FspBI CTAG 3 cut(s) 717, 1175, 1349
FspI TGCGCA 2 cut(s) 738, 1370
GlaI GCGC 5 cut(s) 364, 514, 738, 774, 1370
GluI GCNGC 3 cut(s) 66, 69, 307
GsuI CTGGAG 3 cut(s) 147, 171, 1452
HaeII RGCGCY 3 cut(s) 366, 516, 776
HaeIII GGCC 1 cut(s) 1022
HapII CCGG 6 cut(s) 200, 408, 558, 818, 926, 1019
HhaI GCGC 5 cut(s) 365, 515, 739, 775, 1371
Hin1II CATG 6 cut(s) 58, 923, 941, 1127, 1267, 1501
Hin6I GCGC 5 cut(s) 363, 513, 737, 773, 1369
HinP1I GCGC 5 cut(s) 363, 513, 737, 773, 1369
HindIII AAGCTT 6 cut(s) 350, 436, 500, 586, 760, 846
HinfI GANTC 1 cut(s) 1224
HpaII CCGG 6 cut(s) 200, 408, 558, 818, 926, 1019
HphI GGTGA 3 cut(s) 46, 189, 1121
Hpy166II GTNNAC 4 cut(s) 475, 625, 885, 1048
Hpy188I TCNGA 3 cut(s) 551, 811, 975
Hpy188III TCNNGA 7 cut(s) 164, 188, 938, 1156, 1243, 1264, 1413
Hpy8I GTNNAC 4 cut(s) 475, 625, 885, 1048
Hpy99I CGWCG 6 cut(s) 384, 482, 534, 632, 794, 892
HpyAV CCTTC 2 cut(s) 263, 275
HpyCH4III ACNGT 3 cut(s) 693, 1325, 1442
HpyCH4IV ACGT 6 cut(s) 480, 630, 656, 890, 916, 1050
HpyF10VI GCNNNNNNNGC 5 cut(s) 120, 251, 734, 1061, 1366
HpySE526I ACGT 6 cut(s) 480, 630, 656, 890, 916, 1050
Hsp92II CATG 6 cut(s) 58, 923, 941, 1127, 1267, 1501
HspAI GCGC 5 cut(s) 363, 513, 737, 773, 1369
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 4 cut(s) 13, 261, 682, 1314
LguI GCTCTTC 3 cut(s) 376, 526, 786
LmnI GCTCC 4 cut(s) 203, 709, 928, 1341
Lsp1109I GCAGC 3 cut(s) 77, 80, 293
MaeI CTAG 3 cut(s) 717, 1175, 1349
MaeII ACGT 6 cut(s) 480, 630, 656, 890, 916, 1050
MaeIII GTNAC 2 cut(s) 338, 1109
MalI GATC 4 cut(s) 15, 263, 684, 1316
MboI GATC 4 cut(s) 13, 261, 682, 1314
MboII GAAGA 9 cut(s) 179, 232, 269, 363, 513, 773, 1087, 1144, 1454
MfeI CAATTG 1 cut(s) 1041
MflI RGATCY 1 cut(s) 261
MluCI AATT 6 cut(s) 156, 223, 745, 983, 1041, 1377
MmeI TCCRAC 4 cut(s) 613, 677, 873, 937
MseI TTAA 1 cut(s) 494
MslI CAYNNNNRTG 2 cut(s) 942, 1268
MspI CCGG 6 cut(s) 200, 408, 558, 818, 926, 1019
MspR9I CCNGG 9 cut(s) 173, 201, 409, 422, 559, 572, 819, 832, 1470
MunI CAATTG 1 cut(s) 1041
MvaI CCWGG 5 cut(s) 173, 422, 572, 832, 1470
MwoI GCNNNNNNNGC 5 cut(s) 120, 251, 734, 1061, 1366
NciI CCSGG 4 cut(s) 201, 409, 559, 819
NdeII GATC 4 cut(s) 13, 261, 682, 1314
NlaIII CATG 6 cut(s) 58, 923, 941, 1127, 1267, 1501
NmuCI GTSAC 2 cut(s) 338, 1109
NsbI TGCGCA 2 cut(s) 738, 1370
NspV TTCGAA 6 cut(s) 279, 465, 615, 696, 875, 1328
PagI TCATGA 2 cut(s) 937, 1263
PciSI GCTCTTC 3 cut(s) 376, 526, 786
PfeI GAWTC 1 cut(s) 1224
PkrI GCNGC 3 cut(s) 67, 70, 308
Psp1406I AACGTT 1 cut(s) 1050
Psp6I CCWGG 5 cut(s) 171, 420, 570, 830, 1468
PspGI CCWGG 5 cut(s) 171, 420, 570, 830, 1468
PsuI RGATCY 1 cut(s) 261
RsaI GTAC 1 cut(s) 1392
RsaNI GTAC 1 cut(s) 1391
RseI CAYNNNNRTG 2 cut(s) 942, 1268
SapI GCTCTTC 3 cut(s) 376, 526, 786
SaqAI TTAA 1 cut(s) 494
SatI GCNGC 3 cut(s) 66, 69, 307
Sau3AI GATC 4 cut(s) 13, 261, 682, 1314
ScrFI CCNGG 9 cut(s) 173, 201, 409, 422, 559, 572, 819, 832, 1470
SfcI CTRYAG 2 cut(s) 297, 1507
SfuI TTCGAA 6 cut(s) 279, 465, 615, 696, 875, 1328
SmiMI CAYNNNNRTG 2 cut(s) 942, 1268
SmlI CTYRAG 4 cut(s) 72, 433, 583, 843
SmoI CTYRAG 4 cut(s) 72, 433, 583, 843
Sse9I AATT 6 cut(s) 156, 223, 745, 983, 1041, 1377
SsiI CCGC 3 cut(s) 453, 603, 863
SspMI CTAG 3 cut(s) 717, 1175, 1349
StyD4I CCNGG 9 cut(s) 171, 199, 407, 420, 557, 570, 817, 830, 1468
StyI CCWWGG 1 cut(s) 1023
TaaI ACNGT 3 cut(s) 693, 1325, 1442
TaiI ACGT 6 cut(s) 483, 633, 659, 893, 919, 1053
TaqI TCGA 7 cut(s) 279, 465, 615, 696, 875, 1058, 1328
TasI AATT 6 cut(s) 156, 223, 745, 983, 1041, 1377
TfiI GAWTC 1 cut(s) 1224
Tru1I TTAA 1 cut(s) 494
Tru9I TTAA 1 cut(s) 494
TscAI CASTG 2 cut(s) 970, 1447
TseFI GTSAC 2 cut(s) 338, 1109
TseI GCWGC 3 cut(s) 65, 68, 306
Tsp45I GTSAC 2 cut(s) 338, 1109
TspDTI ATGAA 6 cut(s) 43, 105, 926, 996, 1112, 1252
TspGWI ACGGA 2 cut(s) 1021, 1483
TspRI CASTG 2 cut(s) 970, 1447
XspI CTAG 3 cut(s) 717, 1175, 1349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.