Rmu_sc0005684.1_g000002

ECA1 gametogenesis related family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005684.1
OG0000474
Physical Location & Seq
Forward (+)
1775 .. 2916
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005684.1_g000002.1.cds

Sequence Viewer

Length: 477 bp
atgaccgagtggggcgacctgaccggagatggaggcaacccgactggagaagaggcaggagatgacgtcgaccttggagtgaagcagagtgatgatgacgccgatcttgggaagatgaaggctgacgtcagctcggaagatgacgaagcctacgctccagttacgatcgagtatgggtttccaccagagccgttccgtggatattatgacaatttagagcaatgtgaagacaacttcaacctaaattgtgttaaagagatttaccgcggtatgttcaaaatgaagcctcttaataagaactgttgtaagaaccttatgcagatgggatatggctgtcacagtaggttagcgaaatttgcgaacatgagaaataaagcaaaagcttccatggcattggctaagagtgtgcagatttggcaaaagtgtgtcttagttgttgaaactggtctattccctactgttcctgctcctttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

158

Amino Acids

17.54

Weight (kDa)

4.66

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca FvH4_3g40551
malus_domestica MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis pycom16g22710
rosa_chinensis RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 69, 129
AccI GTMKAC 1 cut(s) 69
AccII CGCG 1 cut(s) 267
AciI CCGC 2 cut(s) 265, 267
AcsI RAATTY 1 cut(s) 353
AcyI GRCGYC 3 cut(s) 66, 99, 126
AfiI CCNNNNNNNGG 2 cut(s) 108, 197
AgsI TTSAA 3 cut(s) 238, 277, 440
AluBI AGCT 2 cut(s) 132, 383
AluI AGCT 2 cut(s) 132, 383
ApoI RAATTY 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 234
BccI CCATC 2 cut(s) 23, 316
BceAI ACGGC 1 cut(s) 175
BpiI GAAGAC 1 cut(s) 234
BpmI CTGGAG 2 cut(s) 66, 141
BsaHI GRCGYC 3 cut(s) 66, 99, 126
BsaJI CCNNGG 4 cut(s) 73, 196, 265, 387
BsaWI WCCGGW 1 cut(s) 23
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 197
Bse1I ACTGG 3 cut(s) 49, 158, 448
Bse3DI GCAATG 1 cut(s) 227
BseDI CCNNGG 4 cut(s) 73, 196, 265, 387
BseLI CCNNNNNNNGG 2 cut(s) 108, 197
BseMI GCAATG 1 cut(s) 227
BseNI ACTGG 3 cut(s) 49, 158, 448
BsgI GTGCAG 1 cut(s) 428
Bsh1236I CGCG 1 cut(s) 267
Bsh1285I CGRYCG 1 cut(s) 168
BsiEI CGRYCG 1 cut(s) 168
BsiSI CCGG 1 cut(s) 24
BslI CCNNNNNNNGG 2 cut(s) 108, 197
Bsp143I GATC 2 cut(s) 103, 165
Bsp19I CCATGG 1 cut(s) 387
BspACI CCGC 2 cut(s) 265, 267
BspFNI CGCG 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 227
BsrI ACTGG 3 cut(s) 49, 158, 448
BssECI CCNNGG 4 cut(s) 73, 196, 265, 387
BssMI GATC 2 cut(s) 103, 165
BssNI GRCGYC 3 cut(s) 66, 99, 126
BssT1I CCWWGG 2 cut(s) 73, 387
Bst4CI ACNGT 3 cut(s) 302, 341, 460
Bst6I CTCTTC 1 cut(s) 45
BstACI GRCGYC 3 cut(s) 66, 99, 126
BstDEI CTNAG 2 cut(s) 399, 430
BstDSI CCRYGG 3 cut(s) 196, 265, 387
BstFNI CGCG 1 cut(s) 267
BstKTI GATC 2 cut(s) 106, 168
BstMBI GATC 2 cut(s) 103, 165
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 3 cut(s) 356, 389, 415
BstUI CGCG 1 cut(s) 267
BstV2I GAAGAC 1 cut(s) 234
BstXI CCANNNNNNTGG 1 cut(s) 394
BtgI CCRYGG 3 cut(s) 196, 265, 387
Cfr42I CCGCGG 1 cut(s) 268
CseI GACGC 1 cut(s) 107
CviAII CATG 2 cut(s) 364, 388
CviJI RGCY 8 cut(s) 122, 132, 149, 190, 286, 333, 383, 398
CviKI_1 RGCY 8 cut(s) 122, 132, 149, 190, 286, 333, 383, 398
DdeI CTNAG 2 cut(s) 399, 430
DpnI GATC 2 cut(s) 105, 167
DpnII GATC 2 cut(s) 103, 165
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco130I CCWWGG 2 cut(s) 73, 387
EcoT14I CCWWGG 2 cut(s) 73, 387
ErhI CCWWGG 2 cut(s) 73, 387
FaeI CATG 2 cut(s) 367, 391
FaiI YATR 7 cut(s) 174, 207, 272, 317, 330, 365, 389
FalI AAGNNNNNCTT 2 cut(s) 413, 445
FatI CATG 2 cut(s) 363, 387
FblI GTMKAC 1 cut(s) 69
GsuI CTGGAG 2 cut(s) 66, 141
HapII CCGG 1 cut(s) 24
HgaI GACGC 1 cut(s) 107
Hin1I GRCGYC 3 cut(s) 66, 99, 126
Hin1II CATG 2 cut(s) 367, 391
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HindIII AAGCTT 1 cut(s) 381
HpaII CCGG 1 cut(s) 24
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 136
Hpy8I GTNNAC 1 cut(s) 70
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 3 cut(s) 302, 341, 460
HpyCH4IV ACGT 2 cut(s) 66, 126
HpyCH4V TGCA 2 cut(s) 319, 409
HpyF10VI GCNNNNNNNGC 3 cut(s) 356, 389, 415
HpyF3I CTNAG 2 cut(s) 399, 430
HpySE526I ACGT 2 cut(s) 66, 126
Hsp92I GRCGYC 3 cut(s) 66, 99, 126
Hsp92II CATG 2 cut(s) 367, 391
KspI CCGCGG 1 cut(s) 268
Kzo9I GATC 2 cut(s) 103, 165
LmnI GCTCC 2 cut(s) 160, 472
LpnPI CCDG 7 cut(s) 30, 32, 37, 42, 171, 198, 429
MaeII ACGT 2 cut(s) 66, 126
MaeIII GTNAC 2 cut(s) 160, 335
MalI GATC 2 cut(s) 105, 167
MboI GATC 2 cut(s) 103, 165
MboII GAAGA 4 cut(s) 62, 124, 149, 239
MluCI AATT 3 cut(s) 211, 244, 353
MnlI CCTC 3 cut(s) 26, 46, 297
MseI TTAA 2 cut(s) 252, 291
MspA1I CMGCKG 1 cut(s) 267
MspI CCGG 1 cut(s) 24
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 3 cut(s) 356, 389, 415
NcoI CCATGG 1 cut(s) 387
NdeII GATC 2 cut(s) 103, 165
NlaIII CATG 2 cut(s) 367, 391
NmuCI GTSAC 1 cut(s) 335
Ple19I CGATCG 1 cut(s) 168
PvuI CGATCG 1 cut(s) 168
SacII CCGCGG 1 cut(s) 268
SalI GTCGAC 1 cut(s) 68
SaqAI TTAA 2 cut(s) 252, 291
Sau3AI GATC 2 cut(s) 103, 165
SetI ASST 9 cut(s) 21, 69, 75, 129, 134, 243, 315, 347, 385
Sfr303I CCGCGG 1 cut(s) 268
SgrBI CCGCGG 1 cut(s) 268
Sse9I AATT 3 cut(s) 211, 244, 353
SsiI CCGC 2 cut(s) 265, 267
StyI CCWWGG 2 cut(s) 73, 387
TaaI ACNGT 3 cut(s) 302, 341, 460
TaiI ACGT 2 cut(s) 69, 129
TaqI TCGA 2 cut(s) 69, 168
TaqII GACCGA 1 cut(s) 20
TasI AATT 3 cut(s) 211, 244, 353
Tru1I TTAA 2 cut(s) 252, 291
Tru9I TTAA 2 cut(s) 252, 291
TseFI GTSAC 1 cut(s) 335
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 2 cut(s) 131, 296
TspGWI ACGGA 1 cut(s) 185
XapI RAATTY 1 cut(s) 353
XmiI GTMKAC 1 cut(s) 69
ZraI GACGTC 2 cut(s) 67, 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.