Rroxscaffold_1G00007930

ECA1 gametogenesis related family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000474
Physical Location & Seq
Reverse (-)
10137793 .. 10138209
417 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00007930.1

Sequence Viewer

Length: 417 bp
ATGTCATCTGTAGCAGCTCAAGTTCCTGATTATGACTATCTACCTGATGAGTCCATTACCCCTGCTAGCTCTGAAGATGATGAAACCTATGCTCCAGTTATGATCGAGTATGGGTTTCCTCCAGAGCCGTTCCGTGGATATTATGACAATTTAGACCAATGTGAAGACAACTTCAACGACCTAAATTGTGTTAAAGAGATTTACCGCGGTATGTTCAAAACTCAGCCTCTTAATAAGAATTGTTGCAAGAACCTTGTGCAGATGGGATATGGCTGTCACAGTAGGTTAGCAAAATTTGCGAACCCGAGAAATAAAGCAAAAGCTTCCATGGCATTGGCTAAGAGTGTGCGGATTTGGCAAAAGTGCATCTCAGTTGTTGAAACTGGTCGATTCCCTGCTGTTCCTGCTCCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

138

Amino Acids

15.58

Weight (kDa)

5.39

Isoelectric Point (pI)

52.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 53 - 122 3e-10 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca FvH4_3g40551
malus_domestica MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis pycom16g22710
rosa_chinensis RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 207
AciI CCGC 3 cut(s) 205, 207, 349
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 3 cut(s) 175, 217, 380
AluBI AGCT 3 cut(s) 17, 69, 323
AluI AGCT 3 cut(s) 17, 69, 323
Ama87I CYCGRG 1 cut(s) 304
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 293
AsuNHI GCTAGC 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 26
BccI CCATC 1 cut(s) 256
BceAI ACGGC 1 cut(s) 112
BfaI CTAG 1 cut(s) 66
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 304
BmsI GCATC 1 cut(s) 375
BmtI GCTAGC 1 cut(s) 69
BpiI GAAGAC 1 cut(s) 171
BpmI CTGGAG 2 cut(s) 78, 105
BsaJI CCNNGG 3 cut(s) 133, 205, 327
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse1I ACTGG 2 cut(s) 95, 388
BseDI CCNNGG 3 cut(s) 133, 205, 327
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMII CTCAG 2 cut(s) 236, 384
BseNI ACTGG 2 cut(s) 95, 388
BseXI GCAGC 1 cut(s) 26
BsgI GTGCAG 1 cut(s) 278
Bsh1236I CGCG 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 304
Bsp143I GATC 1 cut(s) 102
Bsp19I CCATGG 1 cut(s) 327
BspACI CCGC 3 cut(s) 205, 207, 349
BspCNI CTCAG 2 cut(s) 235, 383
BspFNI CGCG 1 cut(s) 207
BspOI GCTAGC 1 cut(s) 69
BsrI ACTGG 2 cut(s) 95, 388
BssECI CCNNGG 3 cut(s) 133, 205, 327
BssMI GATC 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 281
BstAPI GCANNNNNTGC 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 67
BstDEI CTNAG 3 cut(s) 222, 339, 370
BstDSI CCRYGG 3 cut(s) 133, 205, 327
BstFNI CGCG 1 cut(s) 207
BstKTI GATC 1 cut(s) 105
BstMBI GATC 1 cut(s) 102
BstMWI GCNNNNNNNGC 4 cut(s) 296, 329, 355, 404
BstSFI CTRYAG 1 cut(s) 9
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 171
BstXI CCANNNNNNTGG 1 cut(s) 334
BtgI CCRYGG 3 cut(s) 133, 205, 327
Cac8I GCNNGC 1 cut(s) 67
Cfr42I CCGCGG 1 cut(s) 208
CviAII CATG 1 cut(s) 328
CviJI RGCY 7 cut(s) 17, 69, 127, 226, 273, 323, 338
CviKI_1 RGCY 7 cut(s) 17, 69, 127, 226, 273, 323, 338
DdeI CTNAG 3 cut(s) 222, 339, 370
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 1 cut(s) 331
FaiI YATR 8 cut(s) 33, 90, 101, 111, 144, 212, 270, 329
FatI CATG 1 cut(s) 327
Fnu4HI GCNGC 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 1 cut(s) 66
GluI GCNGC 1 cut(s) 15
GsuI CTGGAG 2 cut(s) 78, 105
Hin1II CATG 1 cut(s) 331
HindIII AAGCTT 1 cut(s) 321
HinfI GANTC 2 cut(s) 50, 390
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 2 cut(s) 26, 122
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4V TGCA 3 cut(s) 246, 259, 366
HpyF10VI GCNNNNNNNGC 4 cut(s) 296, 329, 355, 404
HpyF3I CTNAG 3 cut(s) 222, 339, 370
Hsp92II CATG 1 cut(s) 331
KspI CCGCGG 1 cut(s) 208
Kzo9I GATC 1 cut(s) 102
LmnI GCTCC 2 cut(s) 97, 412
LpnPI CCDG 7 cut(s) 39, 57, 75, 108, 135, 369, 408
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 1 cut(s) 375
MaeI CTAG 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 275
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MboII GAAGA 2 cut(s) 86, 176
MluCI AATT 4 cut(s) 148, 184, 238, 293
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 2 cut(s) 129, 237
MseI TTAA 2 cut(s) 192, 231
MspA1I CMGCKG 1 cut(s) 207
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 4 cut(s) 296, 329, 355, 404
NcoI CCATGG 1 cut(s) 327
NdeII GATC 1 cut(s) 102
NheI GCTAGC 1 cut(s) 65
NlaIII CATG 1 cut(s) 331
NmuCI GTSAC 1 cut(s) 275
PfeI GAWTC 1 cut(s) 390
PkrI GCNGC 1 cut(s) 16
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
SacII CCGCGG 1 cut(s) 208
SaqAI TTAA 2 cut(s) 192, 231
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 1 cut(s) 102
SchI GAGTC 1 cut(s) 59
SetI ASST 8 cut(s) 19, 46, 71, 89, 183, 255, 287, 325
SfaNI GCATC 1 cut(s) 375
SfcI CTRYAG 1 cut(s) 9
Sfr303I CCGCGG 1 cut(s) 208
SgrBI CCGCGG 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
Sse9I AATT 4 cut(s) 148, 184, 238, 293
SsiI CCGC 3 cut(s) 205, 207, 349
SspMI CTAG 1 cut(s) 66
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 1 cut(s) 281
TaqI TCGA 2 cut(s) 105, 388
TasI AATT 4 cut(s) 148, 184, 238, 293
TfiI GAWTC 1 cut(s) 390
Tru1I TTAA 2 cut(s) 192, 231
Tru9I TTAA 2 cut(s) 192, 231
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 1 cut(s) 96
TspGWI ACGGA 1 cut(s) 122
XapI RAATTY 1 cut(s) 293
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.