AT2G04031

Contains the following InterPro domains Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000474
Physical Location & Seq
Reverse (-)
1304160 .. 1304783
624 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G04031.1

Sequence Viewer

Length: 456 bp
ATGGCAAAGTCTTTTTCCATGGTAATGCTTGTATCTATAATAATATTTTACATGGCTCGTCCAATTTACTCTCGGAATAAAATATTAGAAGATATAGACATATCTCCAACTCCAGTGGAAGGAACTGATTCACCCACAACAGAATATGAGATAGAGCTTGCTCACCGCTTACATGAAGATTATATTCTGGCTTGCCCTAAAAAGCCGAGTTCCAAATGCGATGATGAGATTTTCAATAACATGTTGGATGGGACGACGCCAGTGACAAATGAATGTTGTCATGATATATTGAAGACTGGCAAAGATTGTCACCTTGCATTGGTTAAAATCATATTCTCCACGAATGATTATAAAAAAATTGCATCTAAGGCTATTCCAAAAAGTAAACAGACATGGAATGATTGTGTCCGTAGAGTTGGGATGGAGATTGGTGCTCCGGTCTCTTTCGAACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

151

Amino Acids

17.03

Weight (kDa)

5.79

Isoelectric Point (pI)

59.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 65 - 136 4e-18 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca FvH4_3g40551
malus_domestica MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis pycom16g22710
rosa_chinensis RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
AciI CCGC 1 cut(s) 166
AcyI GRCGYC 1 cut(s) 257
AfiI CCNNNNNNNGG 2 cut(s) 119, 319
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 2 cut(s) 235, 292
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
Alw21I GWGCWC 1 cut(s) 436
Alw26I GTCTC 1 cut(s) 445
Asp700I GAANNNNTTC 1 cut(s) 127
AsuHPI GGTGA 3 cut(s) 123, 155, 302
AsuII TTCGAA 1 cut(s) 447
BbsI GAAGAC 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 436
BccI CCATC 2 cut(s) 242, 415
BcoDI GTCTC 1 cut(s) 445
BmsI GCATC 1 cut(s) 371
BpiI GAAGAC 1 cut(s) 299
BpmI CTGGAG 1 cut(s) 96
Bpu14I TTCGAA 1 cut(s) 447
BsaHI GRCGYC 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 445
BsaJI CCNNGG 1 cut(s) 18
BsaWI WCCGGW 1 cut(s) 436
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 319
Bse1I ACTGG 3 cut(s) 113, 260, 301
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 2 cut(s) 253, 426
BseLI CCNNNNNNNGG 2 cut(s) 119, 319
BseNI ACTGG 3 cut(s) 113, 260, 301
BsiHKAI GWGCWC 1 cut(s) 436
BsiSI CCGG 1 cut(s) 437
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 2 cut(s) 119, 319
BsmAI GTCTC 1 cut(s) 445
BsmFI GGGAC 1 cut(s) 265
Bso31I GGTCTC 1 cut(s) 445
Bsp119I TTCGAA 1 cut(s) 447
Bsp1286I GDGCHC 1 cut(s) 436
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 1 cut(s) 166
BspHI TCATGA 1 cut(s) 280
BspT104I TTCGAA 1 cut(s) 447
BspTNI GGTCTC 1 cut(s) 445
BsrI ACTGG 3 cut(s) 113, 260, 301
BssECI CCNNGG 1 cut(s) 18
BssNI GRCGYC 1 cut(s) 257
BssT1I CCWWGG 1 cut(s) 18
BstACI GRCGYC 1 cut(s) 257
BstBI TTCGAA 1 cut(s) 447
BstC8I GCNNGC 2 cut(s) 159, 193
BstDEI CTNAG 1 cut(s) 366
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 253, 426
BstMAI GTCTC 1 cut(s) 445
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNSI RCATGY 1 cut(s) 244
BstV2I GAAGAC 1 cut(s) 299
BtgI CCRYGG 1 cut(s) 18
BtgZI GCGATG 1 cut(s) 234
BtsCI GGATG 2 cut(s) 253, 426
BtsIMutI CAGTG 2 cut(s) 120, 267
Cac8I GCNNGC 2 cut(s) 159, 193
CciI TCATGA 1 cut(s) 280
CseI GACGC 1 cut(s) 265
CspCI CAANNNNNGTGG 2 cut(s) 96, 131
CviAII CATG 6 cut(s) 19, 52, 173, 241, 281, 393
CviJI RGCY 5 cut(s) 56, 157, 191, 205, 371
CviKI_1 RGCY 5 cut(s) 56, 157, 191, 205, 371
DdeI CTNAG 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 18
Eco31I GGTCTC 1 cut(s) 445
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 6 cut(s) 22, 55, 176, 244, 284, 396
FaqI GGGAC 1 cut(s) 265
FatI CATG 6 cut(s) 18, 51, 172, 240, 280, 392
FokI GGATG 2 cut(s) 260, 433
GsuI CTGGAG 1 cut(s) 96
HapII CCGG 1 cut(s) 437
HgaI GACGC 1 cut(s) 265
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 6 cut(s) 22, 55, 176, 244, 284, 396
HinfI GANTC 1 cut(s) 128
HpaII CCGG 1 cut(s) 437
HphI GGTGA 3 cut(s) 123, 155, 302
Hpy166II GTNNAC 1 cut(s) 386
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 1 cut(s) 386
Hpy99I CGWCG 1 cut(s) 259
HpyAV CCTTC 1 cut(s) 113
HpyCH4V TGCA 2 cut(s) 317, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 1 cut(s) 366
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 6 cut(s) 22, 55, 176, 244, 284, 396
LmnI GCTCC 1 cut(s) 439
LpnPI CCDG 5 cut(s) 126, 173, 273, 282, 450
LweI GCATC 1 cut(s) 371
MaeIII GTNAC 2 cut(s) 262, 308
MboII GAAGA 3 cut(s) 101, 188, 304
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 2 cut(s) 63, 357
MmeI TCCRAC 2 cut(s) 131, 225
MroXI GAANNNNTTC 1 cut(s) 127
MseI TTAA 2 cut(s) 324, 454
MslI CAYNNNNRTG 1 cut(s) 23
MspI CCGG 1 cut(s) 437
MwoI GCNNNNNNNGC 1 cut(s) 368
NcoI CCATGG 1 cut(s) 18
NlaIII CATG 6 cut(s) 22, 55, 176, 244, 284, 396
NmeAIII GCCGAG 1 cut(s) 231
NmuCI GTSAC 2 cut(s) 262, 308
NspI RCATGY 1 cut(s) 244
NspV TTCGAA 1 cut(s) 447
PagI TCATGA 1 cut(s) 280
PciI ACATGT 1 cut(s) 240
PdmI GAANNNNTTC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 128
PscI ACATGT 1 cut(s) 240
PsiI TTATAA 1 cut(s) 351
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 2 cut(s) 324, 454
SduI GDGCHC 1 cut(s) 436
SetI ASST 3 cut(s) 159, 315, 454
SfaNI GCATC 1 cut(s) 371
SfuI TTCGAA 1 cut(s) 447
SmiMI CAYNNNNRTG 1 cut(s) 23
Sse9I AATT 2 cut(s) 63, 357
SsiI CCGC 1 cut(s) 166
SspI AATATT 2 cut(s) 45, 84
StyI CCWWGG 1 cut(s) 18
TaqI TCGA 1 cut(s) 447
TasI AATT 2 cut(s) 63, 357
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 2 cut(s) 324, 454
Tru9I TTAA 2 cut(s) 324, 454
TscAI CASTG 2 cut(s) 120, 267
TseFI GTSAC 2 cut(s) 262, 308
Tsp45I GTSAC 2 cut(s) 262, 308
TspDTI ATGAA 2 cut(s) 189, 285
TspGWI ACGGA 1 cut(s) 398
TspRI CASTG 2 cut(s) 120, 267
XceI RCATGY 1 cut(s) 244
XmnI GAANNNNTTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.