AT1G47450

Contains the following InterPro domains Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000474
Physical Location & Seq
Reverse (-)
17402636 .. 17403214
579 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47450.1

Sequence Viewer

Length: 510 bp
ATGACAAAGACTCTTCTCATGGTTACGCTCGTGTCTATAGTAATGTTTTACATGGCTCGTCCAATTTTCTCCCAAGAAATTGATCCATATTCGCTAGAGGTGCTAGAAGATGTGGCCTTATCTTCATCTTCAAAGTTTAATATTTACGTTGAAGCTCCCGATGAAGCTCTATTCGAAGAAGCTGATTCACCCGCAATAGAATATGACAAGGACCGGTACAAAATACCCGATTTTATTGCGGCTTGCGCTATGAAGCAAAGCTGGATATGCTTAAATGTGGTTTTCGAAAACATGAAAGATGAGATGATGCCAATTATAAATGAATGTTGTCGTGAAATATTGAAAATGGGCAAAGATTGCCATTTCAGATTGGTTGAAGGCTGGTCCGCCATGTATGTGTATGGTAATAGTATTGCATCTAAAGACATTCCATATAGCAAACAATCATGGAACGAATGTGTCCGTAGAGTAGGGAGCAAGTTTGGTGCTCCGGTCTCTTTTGAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

169

Amino Acids

19.41

Weight (kDa)

4.72

Isoelectric Point (pI)

64.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 82 - 154 1.3e-12 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca FvH4_3g40551
malus_domestica MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis pycom16g22710
rosa_chinensis RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 317
AciI CCGC 3 cut(s) 192, 239, 387
AclWI GGATC 1 cut(s) 77
AfaI GTAC 1 cut(s) 218
AgeI ACCGGT 1 cut(s) 213
AgsI TTSAA 5 cut(s) 132, 152, 343, 377, 503
AluBI AGCT 4 cut(s) 155, 167, 182, 261
AluI AGCT 4 cut(s) 155, 167, 182, 261
Alw21I GWGCWC 1 cut(s) 490
Alw26I GTCTC 1 cut(s) 499
AlwI GGATC 1 cut(s) 77
AoxI GGCC 1 cut(s) 114
AsiGI ACCGGT 1 cut(s) 213
AspLEI GCGC 1 cut(s) 248
AspS9I GGNCC 2 cut(s) 211, 384
AsuHPI GGTGA 1 cut(s) 180
AsuII TTCGAA 2 cut(s) 174, 285
AvaII GGWCC 2 cut(s) 211, 384
BauI CACGAG 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 490
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BcoDI GTCTC 1 cut(s) 499
BfaI CTAG 2 cut(s) 95, 104
BfmI CTRYAG 1 cut(s) 36
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme18I GGWCC 2 cut(s) 211, 384
BmgT120I GGNCC 2 cut(s) 211, 384
BmsI GCATC 2 cut(s) 297, 425
Bpu14I TTCGAA 2 cut(s) 174, 285
BsaI GGTCTC 1 cut(s) 499
BsaWI WCCGGW 2 cut(s) 213, 490
Bse118I RCCGGY 1 cut(s) 213
BshFI GGCC 1 cut(s) 116
BshTI ACCGGT 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 490
BsiSI CCGG 2 cut(s) 214, 491
BsmAI GTCTC 1 cut(s) 499
BsnI GGCC 1 cut(s) 116
Bso31I GGTCTC 1 cut(s) 499
Bsp119I TTCGAA 2 cut(s) 174, 285
Bsp1286I GDGCHC 1 cut(s) 490
Bsp143I GATC 1 cut(s) 82
BspACI CCGC 3 cut(s) 192, 239, 387
BspANI GGCC 1 cut(s) 116
BspPI GGATC 1 cut(s) 77
BspT104I TTCGAA 2 cut(s) 174, 285
BspTNI GGTCTC 1 cut(s) 499
BsrFI RCCGGY 1 cut(s) 213
BssAI RCCGGY 1 cut(s) 213
BssMI GATC 1 cut(s) 82
BssSI CACGAG 1 cut(s) 29
Bst2BI CACGAG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 507
Bst6I CTCTTC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 357
BstBI TTCGAA 2 cut(s) 174, 285
BstC8I GCNNGC 1 cut(s) 244
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 499
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 4 cut(s) 100, 245, 267, 357
BstSFI CTRYAG 1 cut(s) 36
BsuRI GGCC 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 244
CfoI GCGC 1 cut(s) 248
Cfr10I RCCGGY 1 cut(s) 213
Cfr13I GGNCC 2 cut(s) 211, 384
Csp6I GTAC 1 cut(s) 217
CspAI ACCGGT 1 cut(s) 213
CviAII CATG 5 cut(s) 19, 52, 292, 391, 447
CviJI RGCY 8 cut(s) 56, 116, 155, 167, 182, 242, 261, 381
CviKI_1 RGCY 8 cut(s) 56, 116, 155, 167, 182, 242, 261, 381
CviQI GTAC 1 cut(s) 217
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
EciI GGCGGA 1 cut(s) 376
Eco31I GGTCTC 1 cut(s) 499
Eco47I GGWCC 2 cut(s) 211, 384
FaeI CATG 5 cut(s) 22, 55, 295, 394, 450
FatI CATG 5 cut(s) 18, 51, 291, 390, 446
FauI CCCGC 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 2 cut(s) 95, 104
GlaI GCGC 1 cut(s) 247
GluI GCNGC 1 cut(s) 240
HaeIII GGCC 1 cut(s) 116
HapII CCGG 2 cut(s) 214, 491
HhaI GCGC 1 cut(s) 248
Hin1II CATG 5 cut(s) 22, 55, 295, 394, 450
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HinfI GANTC 2 cut(s) 10, 185
HpaII CCGG 2 cut(s) 214, 491
HphI GGTGA 1 cut(s) 180
Hpy188I TCNGA 1 cut(s) 368
Hpy188III TCNNGA 2 cut(s) 158, 332
HpyAV CCTTC 1 cut(s) 371
HpyCH4III ACNGT 1 cut(s) 507
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 1 cut(s) 416
HpyF10VI GCNNNNNNNGC 4 cut(s) 100, 245, 267, 357
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 5 cut(s) 22, 55, 295, 394, 450
HspAI GCGC 1 cut(s) 246
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 3 cut(s) 160, 474, 493
LpnPI CCDG 4 cut(s) 227, 247, 367, 504
LweI GCATC 2 cut(s) 297, 425
MaeI CTAG 2 cut(s) 95, 104
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 22
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 5 cut(s) 5, 114, 119, 120, 188
MhlI GDGCHC 1 cut(s) 490
MluCI AATT 3 cut(s) 63, 78, 312
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 1 cut(s) 91
MseI TTAA 2 cut(s) 138, 272
MslI CAYNNNNRTG 1 cut(s) 395
MspI CCGG 2 cut(s) 214, 491
MwoI GCNNNNNNNGC 4 cut(s) 100, 245, 267, 357
NdeII GATC 1 cut(s) 82
NlaIII CATG 5 cut(s) 22, 55, 295, 394, 450
NspV TTCGAA 2 cut(s) 174, 285
PfeI GAWTC 1 cut(s) 185
PinAI ACCGGT 1 cut(s) 213
PkrI GCNGC 1 cut(s) 241
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
PsiI TTATAA 1 cut(s) 317
PspPI GGNCC 2 cut(s) 211, 384
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 395
SaqAI TTAA 2 cut(s) 138, 272
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 2 cut(s) 211, 384
SchI GAGTC 1 cut(s) 4
SduI GDGCHC 1 cut(s) 490
SetI ASST 6 cut(s) 102, 150, 157, 169, 184, 263
SfaNI GCATC 2 cut(s) 297, 425
SfcI CTRYAG 1 cut(s) 36
SfuI TTCGAA 2 cut(s) 174, 285
SinI GGWCC 2 cut(s) 211, 384
SmiMI CAYNNNNRTG 1 cut(s) 395
Sse9I AATT 3 cut(s) 63, 78, 312
SsiI CCGC 3 cut(s) 192, 239, 387
SspI AATATT 2 cut(s) 142, 339
SspMI CTAG 2 cut(s) 95, 104
TaaI ACNGT 1 cut(s) 507
TaiI ACGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 174, 285
TasI AATT 3 cut(s) 63, 78, 312
TauI GCSGC 1 cut(s) 242
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 2 cut(s) 138, 272
Tru9I TTAA 2 cut(s) 138, 272
TspDTI ATGAA 5 cut(s) 114, 177, 266, 308, 336
TspGWI ACGGA 1 cut(s) 452
VpaK11BI GGWCC 2 cut(s) 211, 384
XspI CTAG 2 cut(s) 95, 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.