AT3G30247

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000474
Physical Location & Seq
Reverse (-)
11888176 .. 11888726
551 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G30247.1

Sequence Viewer

Length: 477 bp
ATGGAGAATAAAACCATGTTCATGATATTTTCTTCGATCATGATTTTGCTATCGTTTTCTCATCCAACTTTGGCCAAAGAAGGCGATAATGACAAGCAAGTCCTCATTTTAGACGACGAGTTTGATGCGATGATTGCAAGGTCACCGACAGCGGAAGATTATAACGAAAATGTTGGTCGTAAATATTCAAAGAAACAAAAAGAATATCTACTGAATTGTAGTATAAAGATGGACATCCCAGACCCAGACAAATGTATAGAAGAAGTGTTGGCTGAAATTATTCAGAACAAAAGTGCTTCAAGGGATTGTTGTTTGGGGATAGTGAAAGCTGGAAAGGAATGTCACATGGAATATATGAAATTAATTTTTCAAATCTATCAACTCAAACGTTTTACTTCTAAAAGGTTTTCCAAAACTAATGAAATATGGAAGAGATGTTCCACTGGAATTGGAGCTGTTTCACCATATTCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

158

Amino Acids

18.13

Weight (kDa)

7.55

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 73 - 147 3.8e-15 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca FvH4_3g40551
malus_domestica MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis pycom16g22710
rosa_chinensis RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
AasI GACNNNNNNGTC 1 cut(s) 98
AccB7I CCANNNNNTGG 1 cut(s) 470
AciI CCGC 1 cut(s) 152
AclI AACGTT 1 cut(s) 388
AcoI YGGCCR 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 470
AgsI TTSAA 3 cut(s) 189, 300, 371
AloI GAACNNNNNNTCC 2 cut(s) 421, 453
AluBI AGCT 2 cut(s) 329, 455
AluI AGCT 2 cut(s) 329, 455
AoxI GGCC 1 cut(s) 72
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
AseI ATTAAT 1 cut(s) 362
Asp700I GAANNNNTTC 1 cut(s) 279
AsuHPI GGTGA 2 cut(s) 135, 453
BalI TGGCCA 1 cut(s) 74
BccI CCATC 1 cut(s) 223
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BmsI GCATC 1 cut(s) 115
BsaBI GATNNNNATC 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 470
Bse1I ACTGG 1 cut(s) 448
Bse8I GATNNNNATC 1 cut(s) 233
BseGI GGATG 2 cut(s) 61, 234
BseJI GATNNNNATC 1 cut(s) 233
BseLI CCNNNNNNNGG 1 cut(s) 470
BseNI ACTGG 1 cut(s) 448
BshFI GGCC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 470
BsnI GGCC 1 cut(s) 74
Bsp143I GATC 1 cut(s) 36
BspACI CCGC 1 cut(s) 152
BspANI GGCC 1 cut(s) 74
BspHI TCATGA 2 cut(s) 21, 39
BsrI ACTGG 1 cut(s) 448
BssMI GATC 1 cut(s) 36
Bst6I CTCTTC 1 cut(s) 425
BstEII GGTNACC 1 cut(s) 141
BstF5I GGATG 2 cut(s) 61, 234
BstKTI GATC 1 cut(s) 39
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstPI GGTNACC 1 cut(s) 141
BsuRI GGCC 1 cut(s) 74
BtgZI GCGATG 1 cut(s) 143
BtsCI GGATG 2 cut(s) 61, 234
BtsIMutI CAGTG 1 cut(s) 441
CciI TCATGA 2 cut(s) 21, 39
CspCI CAANNNNNGTGG 2 cut(s) 430, 465
CviAII CATG 4 cut(s) 16, 22, 40, 346
CviJI RGCY 4 cut(s) 74, 272, 329, 455
CviKI_1 RGCY 4 cut(s) 74, 272, 329, 455
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 425
EarI CTCTTC 1 cut(s) 425
Eco91I GGTNACC 1 cut(s) 141
EcoO65I GGTNACC 1 cut(s) 141
FaeI CATG 4 cut(s) 19, 25, 43, 349
FatI CATG 4 cut(s) 15, 21, 39, 345
FokI GGATG 2 cut(s) 48, 221
HaeIII GGCC 1 cut(s) 74
Hin1II CATG 4 cut(s) 19, 25, 43, 349
HphI GGTGA 2 cut(s) 135, 453
Hpy188I TCNGA 1 cut(s) 285
Hpy188III TCNNGA 2 cut(s) 22, 40
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpySE526I ACGT 1 cut(s) 388
Hsp92II CATG 4 cut(s) 19, 25, 43, 349
Kzo9I GATC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 452
LpnPI CCDG 5 cut(s) 252, 258, 315, 429, 456
LweI GCATC 1 cut(s) 115
MaeII ACGT 1 cut(s) 388
MaeIII GTNAC 2 cut(s) 141, 341
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 4 cut(s) 24, 167, 272, 442
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 5 cut(s) 214, 276, 359, 363, 447
MluNI TGGCCA 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 1 cut(s) 113
Mox20I TGGCCA 1 cut(s) 74
MroXI GAANNNNTTC 1 cut(s) 279
MscI TGGCCA 1 cut(s) 74
MseI TTAA 2 cut(s) 362, 475
MslI CAYNNNNRTG 1 cut(s) 20
Msp20I TGGCCA 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 1 cut(s) 36
NlaIII CATG 4 cut(s) 19, 25, 43, 349
NmuCI GTSAC 2 cut(s) 141, 341
PagI TCATGA 2 cut(s) 21, 39
PdmI GAANNNNTTC 1 cut(s) 279
PflMI CCANNNNNTGG 1 cut(s) 470
PshBI ATTAAT 1 cut(s) 362
PsiI TTATAA 1 cut(s) 162
Psp1406I AACGTT 1 cut(s) 388
PspEI GGTNACC 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 20
SaqAI TTAA 2 cut(s) 362, 475
Sau3AI GATC 1 cut(s) 36
SetI ASST 5 cut(s) 143, 331, 391, 407, 457
SfaNI GCATC 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 20
Sse9I AATT 5 cut(s) 214, 276, 359, 363, 447
SsiI CCGC 1 cut(s) 152
SspI AATATT 1 cut(s) 185
TaiI ACGT 1 cut(s) 391
TaqI TCGA 1 cut(s) 35
TasI AATT 5 cut(s) 214, 276, 359, 363, 447
Tru1I TTAA 2 cut(s) 362, 475
Tru9I TTAA 2 cut(s) 362, 475
TscAI CASTG 1 cut(s) 448
TseFI GTSAC 2 cut(s) 141, 341
Tsp45I GTSAC 2 cut(s) 141, 341
TspDTI ATGAA 3 cut(s) 10, 371, 435
TspRI CASTG 1 cut(s) 448
Van91I CCANNNNNTGG 1 cut(s) 470
VspI ATTAAT 1 cut(s) 362
XmnI GAANNNNTTC 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.