Rh5CG168800

ECA1 gametogenesis related family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000474
Physical Location & Seq
Forward (+)
15730440 .. 15737025
6586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG168800.1

Sequence Viewer

Length: 939 bp
ATGGCGTGTCGAAAGCTGCGCAGACAGAAAAAGGAGAGACAGAGAGGGGTTTTCTTCTCTTCTACCGGCCATCACTGCATCAGTTTGCCTGACGTGCACAGAAAGAAGAAGAGGGGGACGAGAAGAAGAAGAGGAACTGGATCAACACTTGCTAATCAAATCATCAAGTCTATCGCAGCTTGCAGGAGTGCTATCAATTCTTCTTTGTTTAAGCATTGGCTGAAGAACACCAAGAGTGAAAATGGGTTCCATGTCTTTTTAACACGAGTTCAGATCAATAAACAAACAGGGGAAAAGGTCGATGTGAATGTTGAGGACTGTATCTCAGATGAGCTAATAAAATATATCTGTGATAGGTATGACGAAAGGAATGAAATTTCAATTCCATGTTCAATAGATAAGATCACAAAGGGAAGGCAGTCAAATCAGTGGAGGAAGACCGCTGAGGCAGCTACTGTTATTTTTTCAACAGGAAACAACGGGAAGTTTGTGGACAGAACAGGTTTGGTGTTAGTAAGTGTAGCACTATTCATGTCATCATTTGCAGTAGCTCAAGAATATGAGGTTATTTATCAAGTTTTTGAGGATGCTGCGGCGAGCCCTATTGGCATTGAGGTTAACTATTTCGTCATTGATGATGAAAACGGTCAATATGCGTTGCCTCCTAACCTATCACCGGAATCTTATAAGAAGTTGGATGAATGTGTAAATAAGATTACAGAATATTATGCTGAAGAGATCTTGGCCAGAATTTTTAAAAGCGAACCTCTCACTACGGATAATTGCAAAGCCCTCCTGCATTTGGGATATGATTGTCACATTCGGTCAGTGAAAACTCTGCTCTCACGTCCGGAACTAAAAGAAAAGGCTTCTGAGATACTGCCTAAAAGTGTGCAGATTTGGGAAACATGTGCCTTTGTTGCCCCTTCTCCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

312

Amino Acids

35.47

Weight (kDa)

9.06

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 234 - 304 3.3e-06 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45190 AT1G47450 AT1G47470 AT1G52970 AT2G04031 AT2G04037 AT2G04041 AT2G21655 AT2G21727 AT2G25482 AT3G01185 AT3G11990 AT3G29797 AT3G30247 AT4G13261 AT4G13263 AT5G35405
fragaria_vesca FvH4_3g40551
malus_domestica MD13G1274700.v1.1 MD16G1259400.v1.1
pyrus_communis pycom16g22710
rosa_chinensis RchiOBHm_Chr2g0133141 RchiOBHm_Chr5g0073261 RchiOBHm_Chr5g0073271 RchiOBHm_Chr5g0073281 RchiOBHm_Chr5g0073291 RchiOBHm_Chr5g0073301 RchiOBHm_Chr5g0073311 RchiOBHm_Chr5g0073321 RchiOBHm_Chr5g0073331 RchiOBHm_Chr5g0073341
rosa_laevigata RLG00000002208 RLG00000019311 RLG00000036377 RLG00000036378
rosa_multiflora Rmu_sc0001887.1_g000017 Rmu_sc0001997.1_g000015 Rmu_sc0001997.1_g000017 Rmu_sc0003178.1_g000007 Rmu_sc0005684.1_g000002 Rmu_sc0008365.1_g000001 Rmu_sc0008365.1_g000002 Rmu_sc0017046.1_g000005 Rmu_sc0019942.1_g000001
rosa_roxburghii Rroxscaffold_1G00007900 Rroxscaffold_1G00007930 Rroxscaffold_1G00007950
rosa_rugosa Rorug02G0310300 Rorug05G0422600 Rorug05G0422700 Rorug05G0422800.1 Rorug05G0423600 Rorug05G0423600 Rorug05G0423600 Rorug05G0597300 Rorug05G0597400
rosa_samantha Rh2AG362500 Rh2BG368100 Rh2CG338100 Rh2CG345700 Rh2DG385300 Rh2DG385400 Rh5AG479300 Rh5AG479400 Rh5AG480400 Rh5BG500000 Rh5BG500100 Rh5BG500200 Rh5BG500300 Rh5BG500400 Rh5BG500500 Rh5BG500600 Rh5BG501500 Rh5BG501600 Rh5CG168800 Rh5CG523200 Rh5CG523300 Rh5CG523400 Rh5CG523500 Rh5CG523600 Rh5CG523700 Rh5CG524600 Rh5CG524700 Rh5DG512100 Rh5DG512200 Rh5DG512400 Rh5DG513300 Rh5DG513400 Rh5DG513800 Rh7AG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 687
Acc16I TGCGCA 1 cut(s) 20
AccIII TCCGGA 1 cut(s) 850
AciI CCGC 2 cut(s) 441, 593
AclWI GGATC 1 cut(s) 148
AcoI YGGCCR 2 cut(s) 67, 744
AcsI RAATTY 2 cut(s) 375, 750
AcuI CTGAAG 2 cut(s) 242, 753
AfiI CCNNNNNNNGG 2 cut(s) 676, 802
AflIII ACRYGT 1 cut(s) 908
AgsI TTSAA 3 cut(s) 381, 393, 468
AjiI CACGTC 2 cut(s) 94, 848
AluBI AGCT 5 cut(s) 16, 179, 334, 452, 551
AluI AGCT 5 cut(s) 16, 179, 334, 452, 551
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 1 cut(s) 31
Alw44I GTGCAC 1 cut(s) 95
AlwI GGATC 1 cut(s) 148
AlwNI CAGNNNCTG 1 cut(s) 455
Aor13HI TCCGGA 1 cut(s) 850
AoxI GGCC 2 cut(s) 67, 744
ApaLI GTGCAC 1 cut(s) 95
ApeKI GCWGC 4 cut(s) 16, 176, 449, 590
ApoI RAATTY 2 cut(s) 375, 750
AspLEI GCGC 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 666
BaeGI GKGCMC 1 cut(s) 99
BalI TGGCCA 1 cut(s) 746
BanII GRGCYC 1 cut(s) 602
BauI CACGAG 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 443
Bbv12I GWGCWC 1 cut(s) 99
BbvCI CCTCAGC 1 cut(s) 444
BbvI GCAGC 4 cut(s) 3, 188, 461, 577
BccI CCATC 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 31
BglI GCCNNNNNGGC 1 cut(s) 606
BglII AGATCT 1 cut(s) 738
BisI GCNGC 5 cut(s) 17, 177, 450, 591, 594
BlsI GCNGC 5 cut(s) 18, 178, 451, 592, 595
BmgBI CACGTC 2 cut(s) 94, 848
BmiI GGNNCC 1 cut(s) 248
BmsI GCATC 2 cut(s) 87, 577
BpiI GAAGAC 1 cut(s) 443
Bpu10I CCTNAGC 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 537
BsaWI WCCGGW 2 cut(s) 676, 850
Bsc4I CCNNNNNNNGG 2 cut(s) 676, 802
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 142
BseAI TCCGGA 1 cut(s) 850
BseGI GGATG 2 cut(s) 592, 703
BseLI CCNNNNNNNGG 2 cut(s) 676, 802
BseMII CTCAG 3 cut(s) 339, 435, 864
BseNI ACTGG 1 cut(s) 142
BseSI GKGCMC 1 cut(s) 99
BseXI GCAGC 4 cut(s) 3, 188, 461, 577
BsgI GTGCAG 1 cut(s) 914
BshFI GGCC 2 cut(s) 69, 746
BsiHKAI GWGCWC 1 cut(s) 99
BsiSI CCGG 3 cut(s) 66, 677, 851
BslFI GGGAC 1 cut(s) 130
BslI CCNNNNNNNGG 2 cut(s) 676, 802
BsmAI GTCTC 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 130
BsnI GGCC 2 cut(s) 69, 746
Bsp1286I GDGCHC 2 cut(s) 99, 602
Bsp13I TCCGGA 1 cut(s) 850
Bsp143I GATC 4 cut(s) 140, 273, 402, 738
BspACI CCGC 2 cut(s) 441, 593
BspANI GGCC 2 cut(s) 69, 746
BspCNI CTCAG 3 cut(s) 338, 436, 865
BspEI TCCGGA 1 cut(s) 850
BspLI GGNNCC 1 cut(s) 248
BspPI GGATC 1 cut(s) 148
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 1 cut(s) 142
BssAI RCCGGY 1 cut(s) 65
BssMI GATC 4 cut(s) 140, 273, 402, 738
BssSI CACGAG 1 cut(s) 264
Bst2BI CACGAG 1 cut(s) 264
Bst4CI ACNGT 3 cut(s) 320, 457, 647
Bst6I CTCTTC 4 cut(s) 64, 104, 124, 729
BstC8I GCNNGC 2 cut(s) 181, 598
BstDEI CTNAG 3 cut(s) 325, 444, 873
BstF5I GGATG 2 cut(s) 592, 703
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 4 cut(s) 143, 276, 405, 741
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 4 cut(s) 140, 273, 402, 738
BstMWI GCNNNNNNNGC 5 cut(s) 75, 94, 449, 606, 920
BstNSI RCATGY 1 cut(s) 912
BstSLI GKGCMC 1 cut(s) 99
BstV1I GCAGC 4 cut(s) 3, 188, 461, 577
BstV2I GAAGAC 1 cut(s) 443
BstX2I RGATCY 1 cut(s) 738
BstYI RGATCY 1 cut(s) 738
BsuRI GGCC 2 cut(s) 69, 746
BtrI CACGTC 2 cut(s) 94, 848
BtsCI GGATG 2 cut(s) 592, 703
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 3 cut(s) 73, 434, 834
Cac8I GCNNGC 2 cut(s) 181, 598
CaiI CAGNNNCTG 1 cut(s) 455
CfoI GCGC 1 cut(s) 21
Cfr10I RCCGGY 1 cut(s) 65
CviAII CATG 4 cut(s) 251, 387, 532, 909
DdeI CTNAG 3 cut(s) 325, 444, 873
DpnI GATC 4 cut(s) 142, 275, 404, 740
DpnII GATC 4 cut(s) 140, 273, 402, 738
DraI TTTAAA 1 cut(s) 757
EaeI YGGCCR 2 cut(s) 67, 744
Eam1104I CTCTTC 4 cut(s) 64, 104, 124, 729
EarI CTCTTC 4 cut(s) 64, 104, 124, 729
Eco24I GRGCYC 1 cut(s) 602
Eco57I CTGAAG 2 cut(s) 242, 753
EcoT38I GRGCYC 1 cut(s) 602
FaeI CATG 4 cut(s) 254, 390, 535, 912
FaqI GGGAC 1 cut(s) 130
FatI CATG 4 cut(s) 250, 386, 531, 908
Fnu4HI GCNGC 5 cut(s) 17, 177, 450, 591, 594
FokI GGATG 2 cut(s) 599, 710
FriOI GRGCYC 1 cut(s) 602
Fsp4HI GCNGC 5 cut(s) 17, 177, 450, 591, 594
FspI TGCGCA 1 cut(s) 20
GlaI GCGC 1 cut(s) 20
GluI GCNGC 5 cut(s) 17, 177, 450, 591, 594
HaeIII GGCC 2 cut(s) 69, 746
HapII CCGG 3 cut(s) 66, 677, 851
HhaI GCGC 1 cut(s) 21
Hin1II CATG 4 cut(s) 254, 390, 535, 912
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HinfI GANTC 1 cut(s) 680
HpaI GTTAAC 1 cut(s) 619
HpaII CCGG 3 cut(s) 66, 677, 851
HphI GGTGA 1 cut(s) 666
Hpy166II GTNNAC 3 cut(s) 97, 493, 619
Hpy188I TCNGA 3 cut(s) 273, 328, 874
Hpy188III TCNNGA 2 cut(s) 554, 851
Hpy8I GTNNAC 3 cut(s) 97, 493, 619
HpyAV CCTTC 2 cut(s) 408, 936
HpyCH4III ACNGT 3 cut(s) 320, 457, 647
HpyCH4IV ACGT 2 cut(s) 93, 847
HpyCH4V TGCA 7 cut(s) 78, 97, 183, 545, 786, 799, 895
HpyF10VI GCNNNNNNNGC 5 cut(s) 75, 94, 449, 606, 920
HpyF3I CTNAG 3 cut(s) 325, 444, 873
HpySE526I ACGT 2 cut(s) 93, 847
Hsp92II CATG 4 cut(s) 254, 390, 535, 912
HspAI GCGC 1 cut(s) 19
Kpn2I TCCGGA 1 cut(s) 850
KspAI GTTAAC 1 cut(s) 619
Kzo9I GATC 4 cut(s) 140, 273, 402, 738
Lsp1109I GCAGC 4 cut(s) 3, 188, 461, 577
LweI GCATC 2 cut(s) 87, 577
MaeII ACGT 2 cut(s) 93, 847
MaeIII GTNAC 1 cut(s) 815
MalI GATC 4 cut(s) 142, 275, 404, 740
MboI GATC 4 cut(s) 140, 273, 402, 738
MflI RGATCY 1 cut(s) 738
MhlI GDGCHC 2 cut(s) 99, 602
MlsI TGGCCA 1 cut(s) 746
MluCI AATT 5 cut(s) 196, 375, 381, 750, 781
MluNI TGGCCA 1 cut(s) 746
MmeI TCCRAC 1 cut(s) 675
Mox20I TGGCCA 1 cut(s) 746
MroI TCCGGA 1 cut(s) 850
MscI TGGCCA 1 cut(s) 746
MseI TTAA 4 cut(s) 210, 260, 618, 756
Msp20I TGGCCA 1 cut(s) 746
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 3 cut(s) 66, 677, 851
MwoI GCNNNNNNNGC 5 cut(s) 75, 94, 449, 606, 920
NdeII GATC 4 cut(s) 140, 273, 402, 738
NlaIII CATG 4 cut(s) 254, 390, 535, 912
NlaIV GGNNCC 1 cut(s) 248
NmuCI GTSAC 1 cut(s) 815
NsbI TGCGCA 1 cut(s) 20
NspI RCATGY 1 cut(s) 912
PciI ACATGT 1 cut(s) 908
PfeI GAWTC 1 cut(s) 680
PkrI GCNGC 5 cut(s) 18, 178, 451, 592, 595
PscI ACATGT 1 cut(s) 908
PsiI TTATAA 1 cut(s) 687
PspN4I GGNNCC 1 cut(s) 248
PstNI CAGNNNCTG 1 cut(s) 455
PsuI RGATCY 1 cut(s) 738
SaqAI TTAA 4 cut(s) 210, 260, 618, 756
SatI GCNGC 5 cut(s) 17, 177, 450, 591, 594
Sau3AI GATC 4 cut(s) 140, 273, 402, 738
SduI GDGCHC 2 cut(s) 99, 602
SfaNI GCATC 2 cut(s) 87, 577
SmlI CTYRAG 1 cut(s) 552
SmoI CTYRAG 1 cut(s) 552
Sse9I AATT 5 cut(s) 196, 375, 381, 750, 781
SsiI CCGC 2 cut(s) 441, 593
SspI AATATT 1 cut(s) 725
TaaI ACNGT 3 cut(s) 320, 457, 647
TaiI ACGT 2 cut(s) 96, 850
TaqI TCGA 2 cut(s) 10, 300
TaqII GACCGA 1 cut(s) 813
TasI AATT 5 cut(s) 196, 375, 381, 750, 781
TauI GCSGC 1 cut(s) 596
TfiI GAWTC 1 cut(s) 680
Tru1I TTAA 4 cut(s) 210, 260, 618, 756
Tru9I TTAA 4 cut(s) 210, 260, 618, 756
TscAI CASTG 3 cut(s) 80, 434, 834
TseFI GTSAC 1 cut(s) 815
TseI GCWGC 4 cut(s) 16, 176, 449, 590
Tsp45I GTSAC 1 cut(s) 815
TspDTI ATGAA 4 cut(s) 387, 520, 654, 714
TspGWI ACGGA 1 cut(s) 791
TspRI CASTG 3 cut(s) 80, 434, 834
VneI GTGCAC 1 cut(s) 95
XapI RAATTY 2 cut(s) 375, 750
XceI RCATGY 1 cut(s) 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.