Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Reverse (-)

29457205 .. 29459493

Gene Structure 2289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G78290.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAGAGGTACGAAATAGTGAAGGATATTGGGTCTGGTAACTTCGGAGTAGCAAAGCTTGTTCGTGACAAATTTTCCAAAGAGCTTTTCGCTGTTAAGTTCATCGAGCGAGGCCAAAAGATTGATGAACATGTACAAAGAGAAATCATGAACCATAGGTCGCTGATCCATCCCAATATAATAAGATTCAAGGAGGTTTTATTGACGGCAACACATTTGGCGTTAGTAATGGAATACGCCGCCGGAGGAGAACTGTTCGGAAGAATCTGCAGCGCCGGAAGATTCAGTGAAGACGAGGCAAGGTTTTTCTTTCAGCAGCTTATATCAGGAGTTAATTACTGTCACAGTCTTCAAATATGCCATAGAGATTTAAAGCTAGAGAACACGTTACTTGATGGAAGCGAAGCGCCACGTGTAAAGATTTGCGACTTTGGATATTCAAAATCAGGAGTTCTTCATTCGCAACCAAAGACAACAGTAGGAACACCTGCTTACATTGCACCTGAAGTGCTCTCCACGAAAGAGTATGACGGCAAAATCGCTGATGTTTGGTCTTGTGGAGTCACTTTGTATGTTATGCTTGTTGGTGCTTATCCTTTTGAAGATCCTTCTGATCCTAAAGATTTTCGGAAGACGATCGGTCGGATTCTCAAAGCTCAGTATGCTATTCCTGATTATGTTCGAGTTTCGGATGAATGCAGACATCTTCTCTCTCGGATATTCGTTGCCAACCCTGAAAAGAGAATAACAATAGAGGAGATAAAGAATCATTCTTGGTTTCTCAAGAACTTGCCGGTAGAGATGTATGAAGGATCATTGATGATGAATGGTCCATCGACTCAGACAGTAGAAGAGATAGTGTGGATCATTGAAGAAGCTCGGAAACCTATCACCGTAGCTACTGGACTCGCAGGTGCTGGTGGCTCTGGTGGAAGCAGTAATGGTGCCATTGGAAGTAGCAGTATGGATCTCGATGACTTGGACACAGATTTCGACGACATCGATACCGCTGATCTCCTTTCCCCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

343

Amino Acids

38.25

Weight (kDa)

5.38

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 260	3.5e-71	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 256	7.4e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	496, 902
Acc36I	ACCTGC	2 cut(s)	496, 902
AccB1I	GGYRCC	1 cut(s)	944
AciI	CCGC	2 cut(s)	240, 1008
AclWI	GGATC	6 cut(s)	160, 599, 608, 820, 872, 975
AcsI	RAATTY	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	525
AcvI	CACGTG	1 cut(s)	413
AfaI	GTAC	2 cut(s)	11, 135
AflIII	ACRYGT	3 cut(s)	130, 384, 412
AgsI	TTSAA	5 cut(s)	190, 353, 441, 602, 872
AhdI	GACNNNNNGTC	1 cut(s)	639
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	7 cut(s)	58, 85, 319, 376, 656, 878, 899
AluI	AGCT	7 cut(s)	58, 85, 319, 376, 656, 878, 899
Alw21I	GWGCWC	1 cut(s)	513
AlwI	GGATC	6 cut(s)	160, 599, 608, 820, 872, 975
AlwNI	CAGNNNCTG	1 cut(s)	917
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	2 cut(s)	270, 316
ApoI	RAATTY	1 cut(s)	71
ArsI	GACNNNNNNTTYG	2 cut(s)	974, 1006
AspLEI	GCGC	2 cut(s)	275, 409
AspS9I	GGNCC	1 cut(s)	830
AsuHPI	GGTGA	1 cut(s)	883
AvaII	GGWCC	1 cut(s)	830
BanI	GGYRCC	1 cut(s)	944
BbrPI	CACGTG	1 cut(s)	413
BbsI	GAAGAC	3 cut(s)	297, 341, 638
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	2 cut(s)	282, 328
BccI	CCATC	3 cut(s)	177, 389, 841
BceAI	ACGGC	2 cut(s)	222, 547
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	268
BfoI	RGCGCY	2 cut(s)	276, 410
BfuAI	ACCTGC	2 cut(s)	496, 902
BisI	GCNGC	3 cut(s)	240, 271, 317
BlsI	GCNGC	3 cut(s)	241, 272, 318
Bme18I	GGWCC	1 cut(s)	830
BmeRI	GACNNNNNGTC	1 cut(s)	639
BmgT120I	GGNCC	1 cut(s)	830
BmiI	GGNNCC	1 cut(s)	946
BpiI	GAAGAC	3 cut(s)	297, 341, 638
BpuEI	CTTGAG	1 cut(s)	767
Bsa29I	ATCGAT	1 cut(s)	1002
BsaAI	YACGTR	1 cut(s)	413
Bse118I	RCCGGY	1 cut(s)	793
Bse1I	ACTGG	1 cut(s)	907
Bse3DI	GCAATG	1 cut(s)	495
BseCI	ATCGAT	1 cut(s)	1002
BseGI	GGATG	2 cut(s)	169, 697
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	2 cut(s)	671, 854
BseNI	ACTGG	1 cut(s)	907
BseRI	GAGGAG	2 cut(s)	261, 770
BseXI	GCAGC	2 cut(s)	282, 328
Bsh1285I	CGRYCG	2 cut(s)	639, 643
BshFI	GGCC	1 cut(s)	114
BshNI	GGYRCC	1 cut(s)	944
BshVI	ATCGAT	1 cut(s)	1002
BsiEI	CGRYCG	2 cut(s)	639, 643
BsiHKAI	GWGCWC	1 cut(s)	513
BsiSI	CCGG	3 cut(s)	243, 276, 794
BsmI	GAATGC	1 cut(s)	701
BsnI	GGCC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp1407I	TGTACA	1 cut(s)	133
Bsp143I	GATC	8 cut(s)	165, 604, 613, 636, 812, 864, 967, 1012
BspACI	CCGC	2 cut(s)	240, 1008
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	2 cut(s)	670, 853
BspDI	ATCGAT	1 cut(s)	1002
BspHI	TCATGA	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	946
BspMAI	CTGCAG	1 cut(s)	272
BspMI	ACCTGC	2 cut(s)	496, 902
BspPI	GGATC	6 cut(s)	160, 599, 608, 820, 872, 975
BspT107I	GGYRCC	1 cut(s)	944
BsrDI	GCAATG	1 cut(s)	495
BsrFI	RCCGGY	1 cut(s)	793
BsrGI	TGTACA	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	907
BssAI	RCCGGY	1 cut(s)	793
BssMI	GATC	8 cut(s)	165, 604, 613, 636, 812, 864, 967, 1012
Bst4CI	ACNGT	6 cut(s)	255, 341, 347, 478, 847, 895
Bst6I	CTCTTC	1 cut(s)	846
BstAUI	TGTACA	1 cut(s)	133
BstBAI	YACGTR	1 cut(s)	413
BstDEI	CTNAG	2 cut(s)	657, 840
BstF5I	GGATG	2 cut(s)	169, 697
BstH2I	RGCGCY	2 cut(s)	276, 410
BstHHI	GCGC	2 cut(s)	275, 409
BstKTI	GATC	8 cut(s)	168, 607, 616, 639, 815, 867, 970, 1015
BstMBI	GATC	8 cut(s)	165, 604, 613, 636, 812, 864, 967, 1012
BstMCI	CGRYCG	2 cut(s)	639, 643
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 662
BstNSI	RCATGY	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	268
BstV1I	GCAGC	2 cut(s)	282, 328
BstV2I	GAAGAC	3 cut(s)	297, 341, 638
BstX2I	RGATCY	2 cut(s)	604, 967
BstYI	RGATCY	2 cut(s)	604, 967
Bsu15I	ATCGAT	1 cut(s)	1002
BsuRI	GGCC	1 cut(s)	114
BsuTUI	ATCGAT	1 cut(s)	1002
BtsCI	GGATG	2 cut(s)	169, 697
BtsIMutI	CAGTG	1 cut(s)	292
BveI	ACCTGC	2 cut(s)	496, 902
CaiI	CAGNNNCTG	1 cut(s)	917
CciI	TCATGA	1 cut(s)	147
CfoI	GCGC	2 cut(s)	275, 409
Cfr10I	RCCGGY	1 cut(s)	793
Cfr13I	GGNCC	1 cut(s)	830
ClaI	ATCGAT	1 cut(s)	1002
Csp6I	GTAC	2 cut(s)	10, 134
CviAII	CATG	2 cut(s)	131, 148
CviJI	RGCY	9 cut(s)	58, 85, 114, 319, 376, 656, 878, 899, 924
CviKI_1	RGCY	9 cut(s)	58, 85, 114, 319, 376, 656, 878, 899, 924
CviQI	GTAC	2 cut(s)	10, 134
DdeI	CTNAG	2 cut(s)	657, 840
DpnI	GATC	8 cut(s)	167, 606, 615, 638, 814, 866, 969, 1014
DpnII	GATC	8 cut(s)	165, 604, 613, 636, 812, 864, 967, 1012
DraI	TTTAAA	1 cut(s)	372
DriI	GACNNNNNGTC	1 cut(s)	639
Eam1104I	CTCTTC	1 cut(s)	846
Eam1105I	GACNNNNNGTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	846
Eco47I	GGWCC	1 cut(s)	830
Eco57I	CTGAAG	1 cut(s)	525
Eco72I	CACGTG	1 cut(s)	413
FaeI	CATG	2 cut(s)	134, 151
FatI	CATG	2 cut(s)	130, 147
Fnu4HI	GCNGC	3 cut(s)	240, 271, 317
FokI	GGATG	2 cut(s)	156, 704
Fsp4HI	GCNGC	3 cut(s)	240, 271, 317
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	2 cut(s)	274, 408
GluI	GCNGC	3 cut(s)	240, 271, 317
HaeII	RGCGCY	2 cut(s)	276, 410
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	3 cut(s)	243, 276, 794
HhaI	GCGC	2 cut(s)	275, 409
Hin1II	CATG	2 cut(s)	134, 151
Hin6I	GCGC	2 cut(s)	273, 407
HinP1I	GCGC	2 cut(s)	273, 407
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	8 cut(s)	186, 264, 282, 561, 646, 766, 838, 906
HpaII	CCGG	3 cut(s)	243, 276, 794
HphI	GGTGA	1 cut(s)	883
Hpy188I	TCNGA	9 cut(s)	47, 260, 613, 630, 645, 691, 717, 843, 882
Hpy188III	TCNNGA	7 cut(s)	65, 148, 327, 447, 671, 784, 971
Hpy99I	CGWCG	1 cut(s)	998
HpyAV	CCTTC	3 cut(s)	16, 618, 803
HpyCH4III	ACNGT	6 cut(s)	255, 341, 347, 478, 847, 895
HpyCH4IV	ACGT	2 cut(s)	386, 412
HpyCH4V	TGCA	3 cut(s)	270, 500, 699
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 662
HpyF3I	CTNAG	2 cut(s)	657, 840
HpySE526I	ACGT	2 cut(s)	386, 412
Hsp92II	CATG	2 cut(s)	134, 151
HspAI	GCGC	2 cut(s)	273, 407
Kzo9I	GATC	8 cut(s)	165, 604, 613, 636, 812, 864, 967, 1012
Lsp1109I	GCAGC	2 cut(s)	282, 328
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	2 cut(s)	386, 412
MaeIII	GTNAC	5 cut(s)	38, 65, 341, 387, 562
MalI	GATC	8 cut(s)	167, 606, 615, 638, 814, 866, 969, 1014
MboI	GATC	8 cut(s)	165, 604, 613, 636, 812, 864, 967, 1012
MflI	RGATCY	2 cut(s)	604, 967
MhlI	GDGCHC	1 cut(s)	513
MluCI	AATT	2 cut(s)	71, 334
MlyI	GAGTC	3 cut(s)	570, 832, 900
MmeI	TCCRAC	1 cut(s)	623
MnlI	CCTC	5 cut(s)	104, 187, 239, 289, 748
MseI	TTAA	3 cut(s)	96, 333, 371
MspA1I	CMGCKG	1 cut(s)	1010
MspI	CCGG	3 cut(s)	243, 276, 794
Mva1269I	GAATGC	1 cut(s)	701
MwoI	GCNNNNNNNGC	2 cut(s)	497, 662
NdeII	GATC	8 cut(s)	165, 604, 613, 636, 812, 864, 967, 1012
NlaIII	CATG	2 cut(s)	134, 151
NlaIV	GGNNCC	1 cut(s)	946
NmuCI	GTSAC	3 cut(s)	65, 341, 562
NspI	RCATGY	1 cut(s)	134
PagI	TCATGA	1 cut(s)	147
PaqCI	CACCTGC	2 cut(s)	496, 902
PciI	ACATGT	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	999
PctI	GAATGC	1 cut(s)	701
PfeI	GAWTC	5 cut(s)	186, 264, 282, 646, 766
PkrI	GCNGC	3 cut(s)	241, 272, 318
Ple19I	CGATCG	1 cut(s)	639
PleI	GAGTC	3 cut(s)	569, 832, 900
PmaCI	CACGTG	1 cut(s)	413
PmlI	CACGTG	1 cut(s)	413
PpsI	GAGTC	3 cut(s)	569, 832, 900
Ppu21I	YACGTR	1 cut(s)	413
PscI	ACATGT	1 cut(s)	130
PspCI	CACGTG	1 cut(s)	413
PspN4I	GGNNCC	1 cut(s)	946
PspPI	GGNCC	1 cut(s)	830
PstI	CTGCAG	1 cut(s)	272
PstNI	CAGNNNCTG	1 cut(s)	917
PsuI	RGATCY	2 cut(s)	604, 967
PvuI	CGATCG	1 cut(s)	639
RsaI	GTAC	2 cut(s)	11, 135
RsaNI	GTAC	2 cut(s)	10, 134
SaqAI	TTAA	3 cut(s)	96, 333, 371
SatI	GCNGC	3 cut(s)	240, 271, 317
Sau3AI	GATC	8 cut(s)	165, 604, 613, 636, 812, 864, 967, 1012
Sau96I	GGNCC	1 cut(s)	830
SchI	GAGTC	3 cut(s)	570, 832, 900
SduI	GDGCHC	1 cut(s)	513
SfcI	CTRYAG	1 cut(s)	268
SinI	GGWCC	1 cut(s)	830
SmlI	CTYRAG	1 cut(s)	782
SmoI	CTYRAG	1 cut(s)	782
Sse9I	AATT	2 cut(s)	71, 334
SsiI	CCGC	2 cut(s)	240, 1008
SspMI	CTAG	1 cut(s)	377
TaaI	ACNGT	6 cut(s)	255, 341, 347, 478, 847, 895
TaiI	ACGT	2 cut(s)	389, 415
TaqI	TCGA	6 cut(s)	105, 682, 836, 972, 993, 1002
TaqII	GACCGA	1 cut(s)	629
TasI	AATT	2 cut(s)	71, 334
TatI	WGTACW	1 cut(s)	133
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	5 cut(s)	186, 264, 282, 646, 766
Tru1I	TTAA	3 cut(s)	96, 333, 371
Tru9I	TTAA	3 cut(s)	96, 333, 371
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	3 cut(s)	65, 341, 562
TseI	GCWGC	2 cut(s)	270, 316
Tsp45I	GTSAC	3 cut(s)	65, 341, 562
TspDTI	ATGAA	7 cut(s)	91, 141, 164, 446, 708, 822, 839
TspRI	CASTG	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	830
XapI	RAATTY	1 cut(s)	71
XceI	RCATGY	1 cut(s)	134
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.