Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Reverse (-)

5406448 .. 5408873

Gene Structure 2426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00222410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGAGAGGTATGAGATTTTGCAGGATATTGGAGCTGGGAATTTTGCGGTGACAAAGTTGGTCAGAGAAAAGTGTAGCGGAAAACTCTATTGTATTAAGTTGATTGAGAGAGGCAAGAAGATAGATGAAAATGTTCAAAGGGAAATCATGAACCACAGATCCTTGAAGCACCCCAATATTGTTGAATTTAAAGAGGTCCTGCTGACACCAACTCATCTAGGTATAGTAATGGAGTATGCTGCAGGAGGAGAACTGTATGAGAGAATTTGCAAGGCTGGTAAATTTAGTGAGGATGAGGCAAGGTTTTTCTTCCAGCAATTGATATCAGGACTCAAGTACTGTCATACAATGCATATATGTCATAGAGATCTTAAGCTTGAAAATTCACTCTTAGATGGAGGCACAACACCTCGTGTGAAAATATGCGATTTTGGATACTCAAAGTCACTACTTCAATCTCAGCCAAAATCTGTTGTGGGAACACCAAATTATATTGCACCTGAAGTCCTATCTAGAAAAAAATATGATGGAAAGATTTCAGATGTTTGGTCTTGTGGAGTCACCTTATTTGTCATGATCTTCGGGGCATATCCCTTTGAAGATCCTCAGGACCCTTTAAACTTTACAAAAACAATCCGGCGAATTCTTAGTGTACACTACTCAATCCCACAAAATATCGGAGTTTCCGGGGAATGTAGGCATCTGTTTTCTAAAATATTTGTGGCAAACCCAGAACAGAGAATAACAATCCCTGAAATTAAGAGACATCCTTGGTTTGTAAAGAACTTACCTATGGAAATGATGGAAGGAGGAAGTTGGGAAAGCAATGAGGTGAACAATCCATCCCAAAGTGTTGAGGAAGTTCAGTGTATAATACAAGCGGCAAGAAGACCTTTAAAGGTCCGAACTGTCAGTAGGCATCTCACTGGAAGTAGCATGGCTCTTGATGAAGCTGATGTTGGAGGTCCAGAAACAAATGGTGATGTTATGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

331

Amino Acids

37.53

Weight (kDa)

7.99

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 259	1.5e-69	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 255	9.3e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	47, 78, 881
AclWI	GGATC	2 cut(s)	153, 596
AcsI	RAATTY	6 cut(s)	40, 185, 264, 281, 382, 642
AcuI	CTGAAG	1 cut(s)	522
AdeI	CACNNNGTG	1 cut(s)	413
AfaI	GTAC	2 cut(s)	338, 654
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	6 cut(s)	137, 166, 185, 380, 455, 599
AjuI	GAANNNNNNNTTGG	2 cut(s)	942, 974
AloI	GAACNNNNNNTCC	4 cut(s)	143, 175, 827, 859
AluBI	AGCT	3 cut(s)	35, 376, 953
AluI	AGCT	3 cut(s)	35, 376, 953
Alw26I	GTCTC	1 cut(s)	757
AlwI	GGATC	2 cut(s)	153, 596
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	6 cut(s)	40, 185, 264, 281, 382, 642
Asp700I	GAANNNNTTC	2 cut(s)	132, 535
AspS9I	GGNCC	4 cut(s)	196, 610, 901, 965
AsuC2I	CCSGG	1 cut(s)	688
AsuHPI	GGTGA	4 cut(s)	61, 553, 844, 992
AvaII	GGWCC	4 cut(s)	196, 610, 901, 965
AxyI	CCTNAGG	1 cut(s)	606
BauI	CACGAG	1 cut(s)	411
BbsI	GAAGAC	1 cut(s)	895
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	4 cut(s)	389, 521, 796, 850
BciVI	GTATCC	1 cut(s)	428
BcnI	CCSGG	1 cut(s)	688
BcoDI	GTCTC	1 cut(s)	757
BfaI	CTAG	2 cut(s)	218, 513
BfmI	CTRYAG	1 cut(s)	240
BfrI	CTTAAG	1 cut(s)	371
BfuI	GTATCC	1 cut(s)	428
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	2 cut(s)	240, 882
BlsI	GCNGC	2 cut(s)	241, 883
BmcAI	AGTACT	1 cut(s)	338
Bme1390I	CCNGG	1 cut(s)	688
Bme18I	GGWCC	4 cut(s)	196, 610, 901, 965
BmgT120I	GGNCC	4 cut(s)	196, 610, 901, 965
BmiI	GGNNCC	1 cut(s)	612
BmrFI	CCNGG	1 cut(s)	688
BmsI	GCATC	2 cut(s)	709, 928
BpiI	GAAGAC	1 cut(s)	895
BpuEI	CTTGAG	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	688
BsaJI	CCNNGG	2 cut(s)	687, 770
Bse1I	ACTGG	1 cut(s)	931
Bse21I	CCTNAGG	1 cut(s)	606
Bse3DI	GCAATG	1 cut(s)	832
BseDI	CCNNGG	2 cut(s)	687, 770
BseGI	GGATG	3 cut(s)	298, 766, 842
BseMI	GCAATG	1 cut(s)	832
BseMII	CTCAG	2 cut(s)	473, 620
BseNI	ACTGG	1 cut(s)	931
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	226
BseYI	CCCAGC	1 cut(s)	35
BsiSI	CCGG	2 cut(s)	637, 687
BsmAI	GTCTC	1 cut(s)	757
Bsp1407I	TGTACA	1 cut(s)	652
Bsp143I	GATC	4 cut(s)	158, 367, 576, 601
BspACI	CCGC	3 cut(s)	47, 78, 881
BspCNI	CTCAG	2 cut(s)	472, 619
BspHI	TCATGA	2 cut(s)	147, 573
BspLI	GGNNCC	1 cut(s)	612
BspMAI	CTGCAG	1 cut(s)	244
BspPI	GGATC	2 cut(s)	153, 596
BspTI	CTTAAG	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	832
BsrGI	TGTACA	1 cut(s)	652
BsrI	ACTGG	1 cut(s)	931
BssECI	CCNNGG	2 cut(s)	687, 770
BssMI	GATC	4 cut(s)	158, 367, 576, 601
BssSI	CACGAG	1 cut(s)	411
BssT1I	CCWWGG	1 cut(s)	770
Bst2BI	CACGAG	1 cut(s)	411
Bst4CI	ACNGT	3 cut(s)	255, 341, 910
BstAFI	CTTAAG	1 cut(s)	371
BstAUI	TGTACA	1 cut(s)	652
BstDEI	CTNAG	4 cut(s)	391, 459, 606, 647
BstF5I	GGATG	3 cut(s)	298, 766, 842
BstKTI	GATC	4 cut(s)	161, 370, 579, 604
BstMAI	GTCTC	1 cut(s)	757
BstMBI	GATC	4 cut(s)	158, 367, 576, 601
BstSCI	CCNGG	1 cut(s)	686
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	226
BstV2I	GAAGAC	1 cut(s)	895
BstX2I	RGATCY	3 cut(s)	158, 367, 601
BstYI	RGATCY	3 cut(s)	158, 367, 601
Bsu36I	CCTNAGG	1 cut(s)	606
BsuI	GTATCC	1 cut(s)	428
BtsCI	GGATG	3 cut(s)	298, 766, 842
BtsIMutI	CAGTG	2 cut(s)	872, 924
CciI	TCATGA	2 cut(s)	147, 573
Cfr13I	GGNCC	4 cut(s)	196, 610, 901, 965
Csp6I	GTAC	2 cut(s)	337, 653
CviAII	CATG	3 cut(s)	148, 574, 937
CviJI	RGCY	6 cut(s)	35, 275, 376, 463, 941, 953
CviKI_1	RGCY	6 cut(s)	35, 275, 376, 463, 941, 953
CviQI	GTAC	2 cut(s)	337, 653
DdeI	CTNAG	4 cut(s)	391, 459, 606, 647
DpnI	GATC	4 cut(s)	160, 369, 578, 603
DpnII	GATC	4 cut(s)	158, 367, 576, 601
DraI	TTTAAA	3 cut(s)	190, 618, 897
DraIII	CACNNNGTG	1 cut(s)	413
Eco130I	CCWWGG	1 cut(s)	770
Eco32I	GATATC	1 cut(s)	324
Eco47I	GGWCC	4 cut(s)	196, 610, 901, 965
Eco57I	CTGAAG	1 cut(s)	522
Eco81I	CCTNAGG	1 cut(s)	606
EcoO109I	RGGNCCY	2 cut(s)	196, 610
EcoRI	GAATTC	1 cut(s)	642
EcoRV	GATATC	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	770
EcoT22I	ATGCAT	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	770
FaeI	CATG	3 cut(s)	151, 577, 940
FalI	AAGNNNNNCTT	2 cut(s)	877, 909
FatI	CATG	3 cut(s)	147, 573, 936
Fnu4HI	GCNGC	2 cut(s)	240, 882
FokI	GGATG	3 cut(s)	305, 753, 829
Fsp4HI	GCNGC	2 cut(s)	240, 882
FspBI	CTAG	2 cut(s)	218, 513
GluI	GCNGC	2 cut(s)	240, 882
GsaI	CCCAGC	1 cut(s)	39
HapII	CCGG	2 cut(s)	637, 687
Hin1II	CATG	3 cut(s)	151, 577, 940
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	2 cut(s)	330, 558
HpaII	CCGG	2 cut(s)	637, 687
HphI	GGTGA	4 cut(s)	61, 553, 844, 992
Hpy166II	GTNNAC	3 cut(s)	653, 655, 835
Hpy188I	TCNGA	4 cut(s)	65, 541, 680, 905
Hpy188III	TCNNGA	7 cut(s)	148, 327, 513, 574, 608, 944, 968
Hpy8I	GTNNAC	3 cut(s)	653, 655, 835
HpyAV	CCTTC	1 cut(s)	800
HpyCH4III	ACNGT	3 cut(s)	255, 341, 910
HpyCH4V	TGCA	5 cut(s)	22, 242, 270, 352, 497
HpyF3I	CTNAG	4 cut(s)	391, 459, 606, 647
Hsp92II	CATG	3 cut(s)	151, 577, 940
Kzo9I	GATC	4 cut(s)	158, 367, 576, 601
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	2 cut(s)	709, 928
MaeI	CTAG	2 cut(s)	218, 513
MaeIII	GTNAC	3 cut(s)	49, 444, 559
MalI	GATC	4 cut(s)	160, 369, 578, 603
MboI	GATC	4 cut(s)	158, 367, 576, 601
MboII	GAAGA	5 cut(s)	130, 301, 571, 611, 900
MfeI	CAATTG	1 cut(s)	317
MflI	RGATCY	3 cut(s)	158, 367, 601
MluCI	AATT	9 cut(s)	40, 185, 264, 281, 317, 382, 487, 642, 756
MlyI	GAGTC	2 cut(s)	324, 567
MmeI	TCCRAC	1 cut(s)	940
Mph1103I	ATGCAT	1 cut(s)	354
MroXI	GAANNNNTTC	2 cut(s)	132, 535
MseI	TTAA	6 cut(s)	96, 189, 372, 617, 759, 896
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	2 cut(s)	637, 687
MspR9I	CCNGG	1 cut(s)	688
MunI	CAATTG	1 cut(s)	317
NciI	CCSGG	1 cut(s)	688
NdeII	GATC	4 cut(s)	158, 367, 576, 601
NlaIII	CATG	3 cut(s)	151, 577, 940
NlaIV	GGNNCC	1 cut(s)	612
NmuCI	GTSAC	3 cut(s)	49, 444, 559
NsiI	ATGCAT	1 cut(s)	354
PagI	TCATGA	2 cut(s)	147, 573
PdmI	GAANNNNTTC	2 cut(s)	132, 535
PkrI	GCNGC	2 cut(s)	241, 883
PleI	GAGTC	2 cut(s)	324, 566
PpsI	GAGTC	2 cut(s)	324, 566
PpuMI	RGGWCCY	2 cut(s)	196, 610
Psp5II	RGGWCCY	2 cut(s)	196, 610
PspFI	CCCAGC	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	612
PspPI	GGNCC	4 cut(s)	196, 610, 901, 965
PspPPI	RGGWCCY	2 cut(s)	196, 610
PstI	CTGCAG	1 cut(s)	244
PsuI	RGATCY	3 cut(s)	158, 367, 601
RsaI	GTAC	2 cut(s)	338, 654
RsaNI	GTAC	2 cut(s)	337, 653
SaqAI	TTAA	6 cut(s)	96, 189, 372, 617, 759, 896
SatI	GCNGC	2 cut(s)	240, 882
Sau3AI	GATC	4 cut(s)	158, 367, 576, 601
Sau96I	GGNCC	4 cut(s)	196, 610, 901, 965
ScaI	AGTACT	1 cut(s)	338
SchI	GAGTC	2 cut(s)	324, 567
ScrFI	CCNGG	1 cut(s)	688
SfaNI	GCATC	2 cut(s)	709, 928
SfcI	CTRYAG	1 cut(s)	240
SinI	GGWCC	4 cut(s)	196, 610, 901, 965
SmlI	CTYRAG	2 cut(s)	332, 371
SmoI	CTYRAG	2 cut(s)	332, 371
Sse9I	AATT	9 cut(s)	40, 185, 264, 281, 317, 382, 487, 642, 756
SsiI	CCGC	3 cut(s)	47, 78, 881
SspI	AATATT	2 cut(s)	178, 717
SspMI	CTAG	2 cut(s)	218, 513
StyD4I	CCNGG	1 cut(s)	686
StyI	CCWWGG	1 cut(s)	770
TaaI	ACNGT	3 cut(s)	255, 341, 910
TasI	AATT	9 cut(s)	40, 185, 264, 281, 317, 382, 487, 642, 756
TatI	WGTACW	2 cut(s)	336, 652
TauI	GCSGC	1 cut(s)	884
Tru1I	TTAA	6 cut(s)	96, 189, 372, 617, 759, 896
Tru9I	TTAA	6 cut(s)	96, 189, 372, 617, 759, 896
TscAI	CASTG	2 cut(s)	872, 931
TseFI	GTSAC	3 cut(s)	49, 444, 559
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	3 cut(s)	49, 444, 559
TspDTI	ATGAA	3 cut(s)	141, 164, 963
TspRI	CASTG	2 cut(s)	872, 931
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	4 cut(s)	196, 610, 901, 965
XapI	RAATTY	6 cut(s)	40, 185, 264, 281, 382, 642
XbaI	TCTAGA	1 cut(s)	512
XmnI	GAANNNNTTC	2 cut(s)	132, 535
XspI	CTAG	2 cut(s)	218, 513
ZrmI	AGTACT	1 cut(s)	338
Zsp2I	ATGCAT	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.