Rh7CG489000
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Forward (+)
65795792 .. 65797657
1866 bp
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UTR
Exon/CDS
Intron
Rh7CG489000.1

Sequence Viewer

Length: 534 bp
ATGGAGAAGTATGAGGTTGTGAAAGATATTGGGTCTGGGAATTTTGGTGTAGCAAGGCTGGTCAGAGACAAGAATACCCAAGAACTCTTAGCTGTTAAGTTCATTGAGAGAGGCCTTAAGCAAATATGTCATAGAGACCTTAAGCTTGAAAATACACTCTTAGATGACAGTGCAGCACCTCGTGTGAAAATATGTGATTTTGGATACTCGAAGTCATTACTGAGTTCTCTGCCAAAGTCTACTGTGGGAACACCTGCTTATATTGCACCTGAAGTTCTATCTAAAAAACAATATGATGGACAGATTGCAGATGTTTGGTCTTGTGGAGTCACATTATATGTCATGCTCGTCGGAGCATATCCCTTTGAAGATCCTAAGGACCCTATGAACTTTAGAAAAACAATTCGGCGGATCCTTACTGTACGCTATGTAATCCCGGACAGTGTGCGAATTTCTGTGGAATGTAGACACCTTTTGTCTAAGATTTTTGTTGCAAATCCGGAAAAGGTAACATGGCTTTCATTTTGGTGTTGA

Protein Analysis

177

Amino Acids

20.12

Weight (kDa)

9.07

Isoelectric Point (pI)

27.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 40 - 169 3e-31 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 40 - 127 3.9e-13 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000609)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 262
Acc36I ACCTGC 1 cut(s) 262
AccI GTMKAC 2 cut(s) 239, 466
AccIII TCCGGA 1 cut(s) 499
AciI CCGC 1 cut(s) 409
AclWI GGATC 3 cut(s) 365, 406, 419
AcsI RAATTY 2 cut(s) 40, 450
AcuI CTGAAG 1 cut(s) 291
AdeI CACNNNGTG 1 cut(s) 182
AfaI GTAC 1 cut(s) 423
AflII CTTAAG 2 cut(s) 116, 140
AgsI TTSAA 2 cut(s) 149, 368
AluBI AGCT 2 cut(s) 92, 145
AluI AGCT 2 cut(s) 92, 145
Alw26I GTCTC 2 cut(s) 60, 129
AlwI GGATC 3 cut(s) 365, 406, 419
Aor13HI TCCGGA 1 cut(s) 499
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 2 cut(s) 40, 450
AspS9I GGNCC 1 cut(s) 379
AsuC2I CCSGG 1 cut(s) 437
AvaII GGWCC 1 cut(s) 379
AxyI CCTNAGG 1 cut(s) 375
BamHI GGATCC 1 cut(s) 411
BauI CACGAG 1 cut(s) 180
BbvI GCAGC 1 cut(s) 185
BccI CCATC 1 cut(s) 290
BciVI GTATCC 1 cut(s) 197
BcnI CCSGG 1 cut(s) 437
BcoDI GTCTC 2 cut(s) 60, 129
BfrI CTTAAG 2 cut(s) 116, 140
BfuAI ACCTGC 1 cut(s) 262
BfuI GTATCC 1 cut(s) 197
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
Bme1390I CCNGG 1 cut(s) 437
Bme18I GGWCC 1 cut(s) 379
BmgT120I GGNCC 1 cut(s) 379
BmiI GGNNCC 2 cut(s) 381, 413
BmrFI CCNGG 1 cut(s) 437
BpuMI CCSGG 1 cut(s) 437
BsaI GGTCTC 1 cut(s) 129
BsaWI WCCGGW 1 cut(s) 499
Bse21I CCTNAGG 1 cut(s) 375
BseAI TCCGGA 1 cut(s) 499
BseMII CTCAG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 185
BsgI GTGCAG 1 cut(s) 192
BshFI GGCC 1 cut(s) 114
BsiSI CCGG 2 cut(s) 437, 500
BsmAI GTCTC 2 cut(s) 60, 129
BsnI GGCC 1 cut(s) 114
Bso31I GGTCTC 1 cut(s) 129
Bsp13I TCCGGA 1 cut(s) 499
Bsp143I GATC 2 cut(s) 370, 411
BspACI CCGC 1 cut(s) 409
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 213
BspEI TCCGGA 1 cut(s) 499
BspLI GGNNCC 2 cut(s) 381, 413
BspMI ACCTGC 1 cut(s) 262
BspPI GGATC 3 cut(s) 365, 406, 419
BspTI CTTAAG 2 cut(s) 116, 140
BspTNI GGTCTC 1 cut(s) 129
BssMI GATC 2 cut(s) 370, 411
BssSI CACGAG 1 cut(s) 180
Bst2BI CACGAG 1 cut(s) 180
Bst4CI ACNGT 4 cut(s) 170, 244, 421, 443
BstAFI CTTAAG 2 cut(s) 116, 140
BstDEI CTNAG 5 cut(s) 88, 160, 221, 375, 480
BstKTI GATC 2 cut(s) 373, 414
BstMAI GTCTC 2 cut(s) 60, 129
BstMBI GATC 2 cut(s) 370, 411
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 435
BstV1I GCAGC 1 cut(s) 185
BstX2I RGATCY 2 cut(s) 370, 411
BstYI RGATCY 2 cut(s) 370, 411
Bsu36I CCTNAGG 1 cut(s) 375
BsuI GTATCC 1 cut(s) 197
BsuRI GGCC 1 cut(s) 114
BtsIMutI CAGTG 2 cut(s) 175, 448
BveI ACCTGC 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 379
Csp6I GTAC 1 cut(s) 422
CviAII CATG 2 cut(s) 343, 513
CviJI RGCY 5 cut(s) 58, 92, 114, 145, 517
CviKI_1 RGCY 5 cut(s) 58, 92, 114, 145, 517
CviQI GTAC 1 cut(s) 422
DdeI CTNAG 5 cut(s) 88, 160, 221, 375, 480
DpnI GATC 2 cut(s) 372, 413
DpnII GATC 2 cut(s) 370, 411
DraIII CACNNNGTG 1 cut(s) 182
EciI GGCGGA 1 cut(s) 424
Eco147I AGGCCT 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 291
Eco81I CCTNAGG 1 cut(s) 375
EcoO109I RGGNCCY 1 cut(s) 379
FaeI CATG 2 cut(s) 346, 516
FatI CATG 2 cut(s) 342, 512
FblI GTMKAC 2 cut(s) 239, 466
Fnu4HI GCNGC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 174
HaeIII GGCC 1 cut(s) 114
HapII CCGG 2 cut(s) 437, 500
Hin1II CATG 2 cut(s) 346, 516
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 1 cut(s) 327
HpaII CCGG 2 cut(s) 437, 500
Hpy166II GTNNAC 2 cut(s) 240, 467
Hpy188I TCNGA 2 cut(s) 65, 353
Hpy188III TCNNGA 1 cut(s) 500
Hpy8I GTNNAC 2 cut(s) 240, 467
Hpy99I CGWCG 1 cut(s) 353
HpyCH4III ACNGT 4 cut(s) 170, 244, 421, 443
HpyCH4V TGCA 4 cut(s) 173, 266, 308, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 5 cut(s) 88, 160, 221, 375, 480
Hsp92II CATG 2 cut(s) 346, 516
Kpn2I TCCGGA 1 cut(s) 499
Kzo9I GATC 2 cut(s) 370, 411
LmnI GCTCC 1 cut(s) 353
LpnPI CCDG 6 cut(s) 21, 44, 267, 282, 450, 513
Lsp1109I GCAGC 1 cut(s) 185
MaeIII GTNAC 2 cut(s) 328, 508
MalI GATC 2 cut(s) 372, 413
MboI GATC 2 cut(s) 370, 411
MboII GAAGA 1 cut(s) 380
MflI RGATCY 2 cut(s) 370, 411
MluCI AATT 3 cut(s) 40, 402, 450
MlyI GAGTC 1 cut(s) 336
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 3 cut(s) 7, 104, 189
MroI TCCGGA 1 cut(s) 499
MseI TTAA 3 cut(s) 96, 117, 141
MslI CAYNNNNRTG 1 cut(s) 526
MspCI CTTAAG 2 cut(s) 116, 140
MspI CCGG 2 cut(s) 437, 500
MspR9I CCNGG 1 cut(s) 437
MwoI GCNNNNNNNGC 1 cut(s) 263
NciI CCSGG 1 cut(s) 437
NdeII GATC 2 cut(s) 370, 411
NlaIII CATG 2 cut(s) 346, 516
NlaIV GGNNCC 2 cut(s) 381, 413
NmuCI GTSAC 1 cut(s) 328
PaqCI CACCTGC 1 cut(s) 262
PceI AGGCCT 1 cut(s) 114
PfoI TCCNGGA 1 cut(s) 435
PkrI GCNGC 1 cut(s) 175
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
PpuMI RGGWCCY 1 cut(s) 379
Psp5II RGGWCCY 1 cut(s) 379
PspN4I GGNNCC 2 cut(s) 381, 413
PspPI GGNCC 1 cut(s) 379
PspPPI RGGWCCY 1 cut(s) 379
PsuI RGATCY 2 cut(s) 370, 411
RsaI GTAC 1 cut(s) 423
RsaNI GTAC 1 cut(s) 422
RseI CAYNNNNRTG 1 cut(s) 526
SaqAI TTAA 3 cut(s) 96, 117, 141
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 2 cut(s) 370, 411
Sau96I GGNCC 1 cut(s) 379
SchI GAGTC 1 cut(s) 336
ScrFI CCNGG 1 cut(s) 437
SetI ASST 9 cut(s) 18, 94, 141, 147, 181, 256, 271, 474, 510
SinI GGWCC 1 cut(s) 379
SmiMI CAYNNNNRTG 1 cut(s) 526
SmlI CTYRAG 2 cut(s) 116, 140
SmoI CTYRAG 2 cut(s) 116, 140
Sse9I AATT 3 cut(s) 40, 402, 450
SseBI AGGCCT 1 cut(s) 114
SsiI CCGC 1 cut(s) 409
StuI AGGCCT 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 435
TaaI ACNGT 4 cut(s) 170, 244, 421, 443
TaqI TCGA 1 cut(s) 209
TasI AATT 3 cut(s) 40, 402, 450
Tru1I TTAA 3 cut(s) 96, 117, 141
Tru9I TTAA 3 cut(s) 96, 117, 141
TscAI CASTG 2 cut(s) 175, 448
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 3 cut(s) 91, 401, 510
TspRI CASTG 2 cut(s) 175, 448
Vha464I CTTAAG 2 cut(s) 116, 140
VpaK11BI GGWCC 1 cut(s) 379
XapI RAATTY 2 cut(s) 40, 450
XmiI GTMKAC 2 cut(s) 239, 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.