Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Forward (+)

51141867 .. 51142488

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG442600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGAAATGTGGGAAGGAGGAAGTTGGGAAAGCAATGATGTAAACCATCCATCCCAAAGCATAGAAGAAGTCCAGTCCATAATACAAGAGGCAAGAAAACCTTTAAAGGTCCCAACTGTCAGTAGGCATCTCGTTGGAAGCAGCATGGCTATTGATGATGCTGATGTTGGAGGTCGTTGGTCCTCAGGTTGGGATGCCCGAAGGTGGTTTGATCTATGGGGCGGCATGGTCGTCGACGTCCAGAGATATTTGGATGCAGATGATGATGGCGGAGGTTGGTCAGATCCGGGCAGACTGGGTCGAGTGATTTGGTCCTCTACTAGGGACGACGACATTGATGCTGACTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

116

Amino Acids

12.98

Weight (kDa)

4.28

Isoelectric Point (pI)

58.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	240
AccI	GTMKAC	1 cut(s)	234
AciI	CCGC	2 cut(s)	222, 270
AclWI	GGATC	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	237
AfiI	CCNNNNNNNGG	3 cut(s)	189, 204, 321
AlwI	GGATC	1 cut(s)	278
ApeKI	GCWGC	1 cut(s)	141
AspS9I	GGNCC	3 cut(s)	109, 180, 312
AsuC2I	CCSGG	1 cut(s)	288
AvaII	GGWCC	3 cut(s)	109, 180, 312
AxyI	CCTNAGG	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	153
BccI	CCATC	3 cut(s)	54, 58, 260
BcgI	CGANNNNNNTGC	3 cut(s)	214, 248, 320
BcnI	CCSGG	1 cut(s)	288
BfaI	CTAG	1 cut(s)	321
BisI	GCNGC	2 cut(s)	142, 223
BlsI	GCNGC	2 cut(s)	143, 224
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	3 cut(s)	109, 180, 312
BmgT120I	GGNCC	3 cut(s)	109, 180, 312
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	288
BmrI	ACTGGG	1 cut(s)	305
BmsI	GCATC	5 cut(s)	136, 148, 184, 244, 328
BmuI	ACTGGG	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	288
BsaHI	GRCGYC	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 204, 321
Bse1I	ACTGG	2 cut(s)	73, 300
Bse21I	CCTNAGG	1 cut(s)	184
Bse3DI	GCAATG	1 cut(s)	40
BseGI	GGATG	4 cut(s)	46, 50, 199, 259
BseLI	CCNNNNNNNGG	3 cut(s)	189, 204, 321
BseMI	GCAATG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	2 cut(s)	73, 300
BseXI	GCAGC	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	287
BslFI	GGGAC	2 cut(s)	95, 338
BslI	CCNNNNNNNGG	3 cut(s)	189, 204, 321
BsmFI	GGGAC	2 cut(s)	95, 338
Bsp143I	GATC	2 cut(s)	211, 283
BspACI	CCGC	2 cut(s)	222, 270
BspCNI	CTCAG	1 cut(s)	197
BspLI	GGNNCC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	40
BsrI	ACTGG	2 cut(s)	73, 300
BssMI	GATC	2 cut(s)	211, 283
BssNI	GRCGYC	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	118
BstACI	GRCGYC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	184
BstENI	CCTNNNNNAGG	1 cut(s)	319
BstF5I	GGATG	4 cut(s)	46, 50, 199, 259
BstKTI	GATC	2 cut(s)	214, 286
BstMBI	GATC	2 cut(s)	211, 283
BstSCI	CCNGG	1 cut(s)	286
BstV1I	GCAGC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
Bsu36I	CCTNAGG	1 cut(s)	184
BtsCI	GGATG	4 cut(s)	46, 50, 199, 259
Cfr13I	GGNCC	3 cut(s)	109, 180, 312
CviAII	CATG	2 cut(s)	145, 226
CviJI	RGCY	1 cut(s)	149
CviKI_1	RGCY	1 cut(s)	149
DdeI	CTNAG	1 cut(s)	184
DpnI	GATC	2 cut(s)	213, 285
DpnII	GATC	2 cut(s)	211, 283
DraI	TTTAAA	1 cut(s)	105
EciI	GGCGGA	1 cut(s)	285
Eco47I	GGWCC	3 cut(s)	109, 180, 312
Eco81I	CCTNAGG	1 cut(s)	184
EcoNI	CCTNNNNNAGG	1 cut(s)	319
EcoO109I	RGGNCCY	1 cut(s)	109
FaeI	CATG	2 cut(s)	148, 229
FaiI	YATR	5 cut(s)	62, 80, 146, 217, 227
FalI	AAGNNNNNCTT	2 cut(s)	85, 117
FaqI	GGGAC	2 cut(s)	95, 338
FatI	CATG	2 cut(s)	144, 225
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	142, 223
FokI	GGATG	4 cut(s)	33, 37, 206, 266
Fsp4HI	GCNGC	2 cut(s)	142, 223
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	2 cut(s)	142, 223
HapII	CCGG	1 cut(s)	287
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	2 cut(s)	148, 229
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HpaII	CCGG	1 cut(s)	287
Hpy166II	GTNNAC	2 cut(s)	43, 235
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	2 cut(s)	43, 235
Hpy99I	CGWCG	3 cut(s)	236, 239, 332
HpyAV	CCTTC	2 cut(s)	8, 195
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	1 cut(s)	257
HpyF3I	CTNAG	1 cut(s)	184
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	148, 229
Kzo9I	GATC	2 cut(s)	211, 283
LpnPI	CCDG	5 cut(s)	86, 171, 254, 281, 300
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	5 cut(s)	136, 148, 184, 244, 328
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	1 cut(s)	237
MalI	GATC	2 cut(s)	213, 285
MboI	GATC	2 cut(s)	211, 283
MboII	GAAGA	1 cut(s)	77
MflI	RGATCY	1 cut(s)	283
MmeI	TCCRAC	2 cut(s)	115, 148
MnlI	CCTC	6 cut(s)	11, 82, 164, 193, 266, 325
MseI	TTAA	1 cut(s)	104
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	288
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	2 cut(s)	211, 283
NlaIII	CATG	2 cut(s)	148, 229
NlaIV	GGNNCC	1 cut(s)	111
PflFI	GACNNNGTC	1 cut(s)	297
PkrI	GCNGC	2 cut(s)	143, 224
PpuMI	RGGWCCY	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	3 cut(s)	109, 180, 312
PspPPI	RGGWCCY	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	283
PsyI	GACNNNGTC	1 cut(s)	297
SalI	GTCGAC	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	2 cut(s)	142, 223
Sau3AI	GATC	2 cut(s)	211, 283
Sau96I	GGNCC	3 cut(s)	109, 180, 312
ScrFI	CCNGG	1 cut(s)	288
SetI	ASST	7 cut(s)	103, 111, 175, 190, 206, 240, 277
SfaNI	GCATC	5 cut(s)	136, 148, 184, 244, 328
SgrDI	CGTCGACG	1 cut(s)	233
SinI	GGWCC	3 cut(s)	109, 180, 312
SsiI	CCGC	2 cut(s)	222, 270
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	1 cut(s)	118
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	2 cut(s)	234, 301
TauI	GCSGC	1 cut(s)	225
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TseI	GCWGC	1 cut(s)	141
Tth111I	GACNNNGTC	1 cut(s)	297
VpaK11BI	GGWCC	3 cut(s)	109, 180, 312
XagI	CCTNNNNNAGG	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	234
XspI	CTAG	1 cut(s)	321
ZraI	GACGTC	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.