Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Reverse (-)

17925516 .. 17927670

Gene Structure 2155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g14310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCATGTCTATCAGATTCAGGTTTGTATAAGCTTGCTTTTGCACCAGCATCTGTTGAGGTTGGATTGAAAACAGAACATGCTTCCTGTCACTTCTTTAAAAAGTTCAGCAGTAACATTCCATACCATGGCCAATTTCCGATCAATTCATGTGCTTTAGTGATGGAATATTGGATGTCTTCCTGGCAGGTTCTTCTGACACCAACTCATTTAGCCATAGTAATGGAGTATGCTGCTGGAGGAAAACTCTTTGGGAGAATTTGTAATGCTGGTAGATTTAGTGAGAATGAGGCAAGGTTTTTCTTCCAGCAACTGATATCAGGATTTAGTTACTGTCATTCAATGTCACTACTACAGTCTCGGCCAAAATCAACTGTAGGAACACCAGCCTATATTGCTCCTGAGGTCCTATCTAAAAAGCAATATGATGGAAAAATTGCAGATGTTTGGTCTTGTGGAGTCACCTTATATGTGATGATAGCCGGAGCATATCCTTTTGAAGATCCTGATGACCCTAAGAACTTCAGAAAAACCATTAATGTTATTGTCTCATGCAGCGGATCCTTGCCGTACACTACTCAATGCCAGATCATGATTAAGTTTCCATCGAATGTAGCATCTGTTTTAGTGTTGAAGCTTAAGAAAGAGGTGTCAGAGCTGACCCTGCAACGAGACCTTGCTCAGTCTCAGGTTAAGGATCTGGTGCAAGTGCTTGGAGATGATAAACTATCACCATTTTTTCGATGTGATCTTCGTGGTTACATTATCCAAAAGCAAATAGACCTGAGCAAAGCTCACCAGCTGAGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

271

Amino Acids

30.21

Weight (kDa)

8.77

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	62 - 117	7e-09	Protein kinase domain
Pkinase	PF00069	121 - 214	8.9e-15	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	178
AccB7I	CCANNNNNTGG	1 cut(s)	128
AciI	CCGC	1 cut(s)	558
AclWI	GGATC	4 cut(s)	497, 555, 568, 705
AcoI	YGGCCR	2 cut(s)	130, 362
AcsI	RAATTY	1 cut(s)	258
AcuI	CTGAAG	1 cut(s)	508
AfaI	GTAC	1 cut(s)	572
AfiI	CCNNNNNNNGG	1 cut(s)	128
AflII	CTTAAG	1 cut(s)	638
AgsI	TTSAA	4 cut(s)	70, 342, 500, 634
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	5 cut(s)	34, 637, 658, 794, 802
AluI	AGCT	5 cut(s)	34, 637, 658, 794, 802
Alw26I	GTCTC	4 cut(s)	363, 553, 666, 690
AlwI	GGATC	4 cut(s)	497, 555, 568, 705
AlwNI	CAGNNNCTG	2 cut(s)	53, 313
AoxI	GGCC	2 cut(s)	130, 362
ApeKI	GCWGC	2 cut(s)	233, 555
ApoI	RAATTY	1 cut(s)	258
AseI	ATTAAT	1 cut(s)	537
AspS9I	GGNCC	1 cut(s)	406
AsuHPI	GGTGA	3 cut(s)	454, 723, 788
AvaII	GGWCC	1 cut(s)	406
AxyI	CCTNAGG	1 cut(s)	402
BalI	TGGCCA	1 cut(s)	132
BamHI	GGATCC	1 cut(s)	560
BbsI	GAAGAC	1 cut(s)	171
BbvCI	CCTCAGC	1 cut(s)	803
BbvI	GCAGC	2 cut(s)	220, 567
BccI	CCATC	3 cut(s)	157, 422, 613
BceAI	ACGGC	1 cut(s)	553
BciT130I	CCWGG	1 cut(s)	184
BcoDI	GTCTC	4 cut(s)	363, 553, 666, 690
BfmI	CTRYAG	2 cut(s)	353, 375
BfrI	CTTAAG	1 cut(s)	638
BfuAI	ACCTGC	1 cut(s)	178
BisI	GCNGC	2 cut(s)	234, 556
BlsI	GCNGC	2 cut(s)	235, 557
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	406
BmiI	GGNNCC	1 cut(s)	562
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	2 cut(s)	59, 626
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	4 cut(s)	231, 263, 778, 810
BpmI	CTGGAG	1 cut(s)	258
Bpu10I	CCTNAGC	2 cut(s)	785, 803
BsaI	GGTCTC	1 cut(s)	666
BsaJI	CCNNGG	1 cut(s)	127
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse21I	CCTNAGG	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMII	CTCAG	5 cut(s)	393, 695, 701, 776, 794
BseXI	GCAGC	2 cut(s)	220, 567
BshFI	GGCC	2 cut(s)	132, 364
BsiSI	CCGG	1 cut(s)	483
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	4 cut(s)	363, 553, 666, 690
BsnI	GGCC	2 cut(s)	132, 364
Bso31I	GGTCTC	1 cut(s)	666
Bsp143I	GATC	6 cut(s)	141, 502, 560, 588, 697, 748
Bsp19I	CCATGG	1 cut(s)	127
BspACI	CCGC	1 cut(s)	558
BspANI	GGCC	2 cut(s)	132, 364
BspCNI	CTCAG	5 cut(s)	394, 694, 700, 777, 795
BspHI	TCATGA	1 cut(s)	591
BspLI	GGNNCC	1 cut(s)	562
BspMI	ACCTGC	1 cut(s)	178
BspPI	GGATC	4 cut(s)	497, 555, 568, 705
BspTI	CTTAAG	1 cut(s)	638
BspTNI	GGTCTC	1 cut(s)	666
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	6 cut(s)	141, 502, 560, 588, 697, 748
BssT1I	CCWWGG	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	3 cut(s)	335, 357, 376
BstAFI	CTTAAG	1 cut(s)	638
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	6 cut(s)	402, 516, 681, 687, 785, 803
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	180
BstKTI	GATC	6 cut(s)	144, 505, 563, 591, 700, 751
BstMAI	GTCTC	4 cut(s)	363, 553, 666, 690
BstMBI	GATC	6 cut(s)	141, 502, 560, 588, 697, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	395, 664
BstNI	CCWGG	1 cut(s)	184
BstNSI	RCATGY	2 cut(s)	9, 83
BstSCI	CCNGG	1 cut(s)	182
BstSFI	CTRYAG	2 cut(s)	353, 375
BstV1I	GCAGC	2 cut(s)	220, 567
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	3 cut(s)	502, 560, 697
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstYI	RGATCY	3 cut(s)	502, 560, 697
Bsu36I	CCTNAGG	1 cut(s)	402
BsuRI	GGCC	2 cut(s)	132, 364
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	36
CaiI	CAGNNNCTG	2 cut(s)	53, 313
CciI	TCATGA	1 cut(s)	591
Cfr13I	GGNCC	1 cut(s)	406
Csp6I	GTAC	1 cut(s)	571
CviAII	CATG	6 cut(s)	6, 80, 128, 150, 552, 592
CviQI	GTAC	1 cut(s)	571
DdeI	CTNAG	6 cut(s)	402, 516, 681, 687, 785, 803
DpnI	GATC	6 cut(s)	143, 504, 562, 590, 699, 750
DpnII	GATC	6 cut(s)	141, 502, 560, 588, 697, 748
DraI	TTTAAA	1 cut(s)	100
EaeI	YGGCCR	2 cut(s)	130, 362
Eco130I	CCWWGG	1 cut(s)	127
Eco31I	GGTCTC	1 cut(s)	666
Eco32I	GATATC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	406
Eco57I	CTGAAG	1 cut(s)	508
Eco81I	CCTNAGG	1 cut(s)	402
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRII	CCWGG	1 cut(s)	182
EcoRV	GATATC	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	6 cut(s)	9, 83, 131, 153, 555, 595
FatI	CATG	6 cut(s)	5, 79, 127, 149, 551, 591
Fnu4HI	GCNGC	2 cut(s)	234, 556
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	2 cut(s)	234, 556
GluI	GCNGC	2 cut(s)	234, 556
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	2 cut(s)	132, 364
HapII	CCGG	1 cut(s)	483
Hin1II	CATG	6 cut(s)	9, 83, 131, 153, 555, 595
HindIII	AAGCTT	2 cut(s)	32, 635
HinfI	GANTC	2 cut(s)	17, 459
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	3 cut(s)	454, 723, 788
Hpy166II	GTNNAC	1 cut(s)	573
Hpy188I	TCNGA	5 cut(s)	16, 141, 198, 527, 655
Hpy188III	TCNNGA	4 cut(s)	321, 401, 506, 592
Hpy8I	GTNNAC	1 cut(s)	573
HpyCH4III	ACNGT	3 cut(s)	335, 357, 376
HpyCH4V	TGCA	5 cut(s)	44, 440, 555, 667, 706
HpyF10VI	GCNNNNNNNGC	2 cut(s)	395, 664
HpyF3I	CTNAG	6 cut(s)	402, 516, 681, 687, 785, 803
Hsp92II	CATG	6 cut(s)	9, 83, 131, 153, 555, 595
Kzo9I	GATC	6 cut(s)	141, 502, 560, 588, 697, 748
LmnI	GCTCC	2 cut(s)	403, 485
Lsp1109I	GCAGC	2 cut(s)	220, 567
LweI	GCATC	2 cut(s)	59, 626
MaeIII	GTNAC	6 cut(s)	89, 113, 329, 345, 460, 758
MalI	GATC	6 cut(s)	143, 504, 562, 590, 699, 750
MboI	GATC	6 cut(s)	141, 502, 560, 588, 697, 748
MboII	GAAGA	5 cut(s)	171, 185, 295, 512, 743
MflI	RGATCY	3 cut(s)	502, 560, 697
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	4 cut(s)	134, 145, 258, 435
MluNI	TGGCCA	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	468
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	6 cut(s)	52, 233, 283, 397, 640, 798
Mox20I	TGGCCA	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	5 cut(s)	99, 537, 597, 639, 693
MslI	CAYNNNNRTG	1 cut(s)	221
Msp20I	TGGCCA	1 cut(s)	132
MspA1I	CMGCKG	2 cut(s)	558, 802
MspCI	CTTAAG	1 cut(s)	638
MspI	CCGG	1 cut(s)	483
MspR9I	CCNGG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	2 cut(s)	395, 664
NcoI	CCATGG	1 cut(s)	127
NdeII	GATC	6 cut(s)	141, 502, 560, 588, 697, 748
NlaIII	CATG	6 cut(s)	9, 83, 131, 153, 555, 595
NlaIV	GGNNCC	1 cut(s)	562
NmeAIII	GCCGAG	1 cut(s)	340
NmuCI	GTSAC	3 cut(s)	89, 345, 460
NspI	RCATGY	2 cut(s)	9, 83
PagI	TCATGA	1 cut(s)	591
PfeI	GAWTC	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	235, 557
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
PpuMI	RGGWCCY	1 cut(s)	406
PshBI	ATTAAT	1 cut(s)	537
Psp5II	RGGWCCY	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	562
PspPI	GGNCC	1 cut(s)	406
PspPPI	RGGWCCY	1 cut(s)	406
PstNI	CAGNNNCTG	2 cut(s)	53, 313
PsuI	RGATCY	3 cut(s)	502, 560, 697
PvuII	CAGCTG	1 cut(s)	802
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	5 cut(s)	99, 537, 597, 639, 693
SatI	GCNGC	2 cut(s)	234, 556
Sau3AI	GATC	6 cut(s)	141, 502, 560, 588, 697, 748
Sau96I	GGNCC	1 cut(s)	406
SchI	GAGTC	1 cut(s)	468
ScrFI	CCNGG	1 cut(s)	184
SfaNI	GCATC	2 cut(s)	59, 626
SfcI	CTRYAG	2 cut(s)	353, 375
SinI	GGWCC	1 cut(s)	406
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
Sse9I	AATT	4 cut(s)	134, 145, 258, 435
SsiI	CCGC	1 cut(s)	558
SspI	AATATT	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	182
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	3 cut(s)	335, 357, 376
TaqI	TCGA	2 cut(s)	608, 742
TasI	AATT	4 cut(s)	134, 145, 258, 435
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	5 cut(s)	99, 537, 597, 639, 693
Tru9I	TTAA	5 cut(s)	99, 537, 597, 639, 693
TseFI	GTSAC	3 cut(s)	89, 345, 460
TseI	GCWGC	2 cut(s)	233, 555
Tsp45I	GTSAC	3 cut(s)	89, 345, 460
TspDTI	ATGAA	1 cut(s)	138
Van91I	CCANNNNNTGG	1 cut(s)	128
Vha464I	CTTAAG	1 cut(s)	638
VpaK11BI	GGWCC	1 cut(s)	406
VspI	ATTAAT	1 cut(s)	537
XapI	RAATTY	1 cut(s)	258
XceI	RCATGY	2 cut(s)	9, 83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.