Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Forward (+)

51162154 .. 51164389

Gene Structure 2236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG442700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAGAAGTATGAGGTTGTGAAAGATATTGGGACTGGGAATTTTGGTGTAGCAAGGCTGGTCAGAGACAAGAATACCCAAGAACTCTTAGCTGTTAAGTTCATTGAGAGAGGCCTTAAGTCATTACTGAGTTCTCTGCCAAAGTCTACTGTGGGAACACCTGCTTATATTGCACCTGAAGTTCTATCTAAAAAACAATATGATGGACAGCGGATTCTTACTGTACGCTACGTAATCCCGGACAGTGTGCGAATTTCTGTGGAGTGTAGACACCTGTTGTCTAAGATTTTTGTTGCAAACCCGGAAAAGAGAATAAAAATTCCAGAAATTAAGACCCACCGTTGGTTTGCAAAGAACTTACCTCTGGAAATGAAGGAAGGAGGAACTTGGGAGAATAATGCTGTAAACACACCATCCCAAAGCATTGAAGAAGTTCAGTCCATAATAAAAGAGGCAAGAAAACCTTTGAAGGTCCCAACTGTCAGTAGGCATTGCGTTGGAAGCAGCATGGCTATTGATGATGCTGATGTTGAAGGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

180

Amino Acids

20.16

Weight (kDa)

9.32

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	169
Acc36I	ACCTGC	1 cut(s)	169
AccI	GTMKAC	2 cut(s)	146, 268
AciI	CCGC	1 cut(s)	211
AcsI	RAATTY	3 cut(s)	40, 252, 318
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	2 cut(s)	225, 538
AfiI	CCNNNNNNNGG	1 cut(s)	342
AflII	CTTAAG	1 cut(s)	116
AgsI	TTSAA	3 cut(s)	428, 469, 533
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	60
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	504
ApoI	RAATTY	3 cut(s)	40, 252, 318
Asp700I	GAANNNNTTC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	472
AsuC2I	CCSGG	2 cut(s)	239, 302
AvaII	GGWCC	1 cut(s)	472
BbvI	GCAGC	1 cut(s)	516
BccI	CCATC	2 cut(s)	197, 421
BcnI	CCSGG	2 cut(s)	239, 302
BcoDI	GTCTC	1 cut(s)	60
BfrI	CTTAAG	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	169
BisI	GCNGC	1 cut(s)	505
BlsI	GCNGC	1 cut(s)	506
Bme1390I	CCNGG	2 cut(s)	239, 302
Bme18I	GGWCC	1 cut(s)	472
BmgT120I	GGNCC	1 cut(s)	472
BmiI	GGNNCC	1 cut(s)	474
BmrFI	CCNGG	2 cut(s)	239, 302
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	1 cut(s)	511
BmuI	ACTGGG	1 cut(s)	45
BpuMI	CCSGG	2 cut(s)	239, 302
BsaAI	YACGTR	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse1I	ACTGG	1 cut(s)	40
Bse3DI	GCAATG	1 cut(s)	490
BseGI	GGATG	1 cut(s)	413
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMI	GCAATG	1 cut(s)	490
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	516
BshFI	GGCC	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	239, 302
BslFI	GGGAC	2 cut(s)	46, 458
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmAI	GTCTC	1 cut(s)	60
BsmFI	GGGAC	2 cut(s)	46, 458
BsnI	GGCC	1 cut(s)	114
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	474
BspMI	ACCTGC	1 cut(s)	169
BspTI	CTTAAG	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	490
BsrI	ACTGG	1 cut(s)	40
Bst4CI	ACNGT	5 cut(s)	151, 223, 245, 341, 481
BstAFI	CTTAAG	1 cut(s)	116
BstBAI	YACGTR	1 cut(s)	232
BstDEI	CTNAG	3 cut(s)	88, 128, 282
BstF5I	GGATG	1 cut(s)	413
BstMAI	GTCTC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 501
BstSCI	CCNGG	2 cut(s)	237, 300
BstSNI	TACGTA	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	516
BsuRI	GGCC	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	413
BtsIMutI	CAGTG	1 cut(s)	250
BveI	ACCTGC	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	472
Csp6I	GTAC	2 cut(s)	224, 537
CviAII	CATG	1 cut(s)	508
CviJI	RGCY	4 cut(s)	58, 92, 114, 512
CviKI_1	RGCY	4 cut(s)	58, 92, 114, 512
CviQI	GTAC	2 cut(s)	224, 537
DdeI	CTNAG	3 cut(s)	88, 128, 282
Eco105I	TACGTA	1 cut(s)	232
Eco147I	AGGCCT	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	472
Eco57I	CTGAAG	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	472
FaeI	CATG	1 cut(s)	511
FaiI	YATR	6 cut(s)	12, 168, 201, 443, 509, 541
FalI	AAGNNNNNCTT	2 cut(s)	448, 480
FaqI	GGGAC	2 cut(s)	46, 458
FatI	CATG	1 cut(s)	507
FblI	GTMKAC	2 cut(s)	146, 268
Fnu4HI	GCNGC	1 cut(s)	505
FokI	GGATG	1 cut(s)	400
Fsp4HI	GCNGC	1 cut(s)	505
GluI	GCNGC	1 cut(s)	505
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	2 cut(s)	239, 302
Hin1II	CATG	1 cut(s)	511
HinfI	GANTC	1 cut(s)	214
HpaII	CCGG	2 cut(s)	239, 302
Hpy166II	GTNNAC	3 cut(s)	147, 269, 406
Hpy188I	TCNGA	1 cut(s)	65
Hpy188III	TCNNGA	2 cut(s)	323, 365
Hpy8I	GTNNAC	3 cut(s)	147, 269, 406
HpyAV	CCTTC	4 cut(s)	367, 371, 463, 527
HpyCH4III	ACNGT	5 cut(s)	151, 223, 245, 341, 481
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	3 cut(s)	173, 296, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 501
HpyF3I	CTNAG	3 cut(s)	88, 128, 282
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	511
LpnPI	CCDG	9 cut(s)	21, 44, 174, 189, 252, 287, 315, 336, 350
Lsp1109I	GCAGC	1 cut(s)	516
LweI	GCATC	1 cut(s)	511
MaeII	ACGT	1 cut(s)	231
MboII	GAAGA	1 cut(s)	440
MluCI	AATT	4 cut(s)	40, 252, 318, 327
MmeI	TCCRAC	1 cut(s)	478
MnlI	CCTC	5 cut(s)	7, 104, 372, 374, 445
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	3 cut(s)	96, 117, 330
MspA1I	CMGCKG	1 cut(s)	211
MspCI	CTTAAG	1 cut(s)	116
MspI	CCGG	2 cut(s)	239, 302
MspR9I	CCNGG	2 cut(s)	239, 302
MwoI	GCNNNNNNNGC	2 cut(s)	170, 501
NciI	CCSGG	2 cut(s)	239, 302
NlaIII	CATG	1 cut(s)	511
NlaIV	GGNNCC	1 cut(s)	474
PaqCI	CACCTGC	1 cut(s)	169
PceI	AGGCCT	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	214
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	506
Ppu21I	YACGTR	1 cut(s)	232
PpuMI	RGGWCCY	1 cut(s)	472
Psp5II	RGGWCCY	1 cut(s)	472
PspN4I	GGNNCC	1 cut(s)	474
PspPI	GGNCC	1 cut(s)	472
PspPPI	RGGWCCY	1 cut(s)	472
RsaI	GTAC	2 cut(s)	225, 538
RsaNI	GTAC	2 cut(s)	224, 537
SaqAI	TTAA	3 cut(s)	96, 117, 330
SatI	GCNGC	1 cut(s)	505
Sau96I	GGNCC	1 cut(s)	472
ScrFI	CCNGG	2 cut(s)	239, 302
SfaNI	GCATC	1 cut(s)	511
SinI	GGWCC	1 cut(s)	472
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SnaBI	TACGTA	1 cut(s)	232
Sse9I	AATT	4 cut(s)	40, 252, 318, 327
SseBI	AGGCCT	1 cut(s)	114
SsiI	CCGC	1 cut(s)	211
StuI	AGGCCT	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	237, 300
TaaI	ACNGT	5 cut(s)	151, 223, 245, 341, 481
TaiI	ACGT	1 cut(s)	234
TasI	AATT	4 cut(s)	40, 252, 318, 327
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	3 cut(s)	96, 117, 330
Tru9I	TTAA	3 cut(s)	96, 117, 330
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	1 cut(s)	504
TspDTI	ATGAA	2 cut(s)	91, 386
TspRI	CASTG	1 cut(s)	250
Vha464I	CTTAAG	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	472
XapI	RAATTY	3 cut(s)	40, 252, 318
XmiI	GTMKAC	2 cut(s)	146, 268
XmnI	GAANNNNTTC	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.