Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Forward (+)

32202864 .. 32203043

Gene Structure 180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0317000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGTCATGTTTTAAACTCAAATTTGAACACTATGTAGTCAAAGCCAATATCTATCTCTATGATCATACTGCAAGTGAGCACCCTAATTTTGCTAACCGTGCATCAAGTCTTCTCAAATCAGTTTCTGAAGTGAAGTATATGTCTCTTTCACCCCATTATTGGAAAGTTAGTATTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

59

Amino Acids

6.9

Weight (kDa)

9.17

Isoelectric Point (pI)

63.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	26
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	147
AlwNI	CAGNNNCTG	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	81
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	147
BmsI	GCATC	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	61
BssMI	GATC	1 cut(s)	61
Bst4CI	ACNGT	1 cut(s)	98
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstV2I	GAAGAC	1 cut(s)	101
CaiI	CAGNNNCTG	1 cut(s)	125
CviAII	CATG	1 cut(s)	6
CviJI	RGCY	1 cut(s)	44
CviKI_1	RGCY	1 cut(s)	44
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
DraI	TTTAAA	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	147
FaeI	CATG	1 cut(s)	9
FaiI	YATR	6 cut(s)	7, 33, 60, 66, 138, 140
FatI	CATG	1 cut(s)	5
FbaI	TGATCA	1 cut(s)	61
FspEI	CC	8 cut(s)	58, 95, 96, 110, 145, 165, 166, 167
Hin1II	CATG	1 cut(s)	9
HphI	GGTGA	1 cut(s)	141
Hpy188I	TCNGA	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4V	TGCA	2 cut(s)	71, 101
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
Hsp92II	CATG	1 cut(s)	9
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	61
LweI	GCATC	1 cut(s)	110
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	1 cut(s)	101
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	2 cut(s)	20, 85
MseI	TTAA	2 cut(s)	12, 178
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	9
PstNI	CAGNNNCTG	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	12, 178
Sau3AI	GATC	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	81
SfaNI	GCATC	1 cut(s)	110
SgeI	CNNG	4 cut(s)	18, 84, 110, 117
Sse9I	AATT	2 cut(s)	20, 85
TaaI	ACNGT	1 cut(s)	98
TasI	AATT	2 cut(s)	20, 85
Tru1I	TTAA	2 cut(s)	12, 178
Tru9I	TTAA	2 cut(s)	12, 178
XapI	RAATTY	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.