RchiOBHm_Chr7g0242721
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
68983478 .. 68987316
3839 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21753

Sequence Viewer

Length: 975 bp
ATGGAGAGGTATGAGATTGTGAAAGATATTGGGTCTGGGACTTCTGGGGTAGCAAGGTTGGTAAGAGATAAATGTACCGGAGAACACTTTGCCGTTAAGTTCATCGAGAGAGGCAACAAGATCAATGAAAATGTACAAGAAGAAATCATGAACCACAGATCCTTGAAGCATCCCAGTATTGTTCAATTCAAAGAGGTCCTCCTGACACCAACTCATCTATGCATTGTGATGGAGTATGCTGCTGGAGGAGAACTCTATGAGAGAATATGCAAAGCCGGTAGATTTAGTGAGACTGAGGCAAGGTTTTTCTTCCAGCAATTGATATCAGGAGTTGATTACTGCCATACAATGAAAGTATGTCATAGAGACCTTAAGCTTGAAAATGCACTCTTAGATGACAGCACAGCACCTCGGGTGAAAATATGCGATTTTGGATCCTCAGAGTCACTACTACTACATTCTTGGCAAAAATCTACTGCGGGAACACCGGCTTATATTGCACCTGAGGTCCTATCTGAAAAACAATATGATGGAGCGATTGCAGATGTTTGGTCTTGTGGAGTCTCCCTATATGTCATGATTGTTGGAGCATATCCCTTTGAAGATCCTAAGGACCCTATGAACTTTAGAAAAACAATTCTGCGGACCCTTACTGTATGCTACTCAATCCCTGGTAATGTACGAGTTTCTGTGGAATGTAGAGACTTGCTCGCTAAGATATTTGTGGCAAACCCAGAAAAGAGAATTACAATTTCAGAAATTAAGAACCACGGTTGGTTCTTGAAGAATTTACCTATGGAAATGTGGGGAGGAGGAAGTTGGGAAAGCAATGATGTAAACCATCCATCCCAAAGAATTGAAGAAGTCCAGTCCATAATACAAGAGGCAAGAAAACCTTTAAAGGTCCCAACTGTCAGTAGGCATATCATTGGAAGCAGCATGGCCATTGATGATGCTGAATTAAACAAGTGGTGA

Protein Analysis

324

Amino Acids

36.67

Weight (kDa)

6.38

Isoelectric Point (pI)

37.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 260 1.9e-68 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 6 - 256 1.7e-30 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000609)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 479, 643
AclWI GGATC 4 cut(s) 153, 429, 442, 599
AcoI YGGCCR 1 cut(s) 942
AcsI RAATTY 1 cut(s) 787
AfaI GTAC 3 cut(s) 76, 135, 681
AflII CTTAAG 1 cut(s) 371
AgsI TTSAA 7 cut(s) 166, 185, 190, 380, 602, 784, 860
AjnI CCWGG 1 cut(s) 670
AloI GAACNNNNNNTCC 2 cut(s) 143, 175
AluBI AGCT 1 cut(s) 376
AluI AGCT 1 cut(s) 376
Alw26I GTCTC 4 cut(s) 284, 360, 568, 696
AlwI GGATC 4 cut(s) 153, 429, 442, 599
Ama87I CYCGRG 1 cut(s) 411
AoxI GGCC 1 cut(s) 942
ApeKI GCWGC 2 cut(s) 239, 936
ApoI RAATTY 1 cut(s) 787
AspS9I GGNCC 5 cut(s) 196, 508, 613, 645, 904
AsuHPI GGTGA 1 cut(s) 427
AvaI CYCGRG 1 cut(s) 411
AvaII GGWCC 5 cut(s) 196, 508, 613, 645, 904
AxyI CCTNAGG 2 cut(s) 504, 609
BalI TGGCCA 1 cut(s) 944
BamHI GGATCC 1 cut(s) 434
BbvI GCAGC 2 cut(s) 226, 948
BccI CCATC 4 cut(s) 223, 524, 849, 853
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 672
BcoDI GTCTC 4 cut(s) 284, 360, 568, 696
BfrI CTTAAG 1 cut(s) 371
BisI GCNGC 2 cut(s) 240, 937
BlsI GCNGC 2 cut(s) 241, 938
Bme1390I CCNGG 1 cut(s) 672
Bme18I GGWCC 5 cut(s) 196, 508, 613, 645, 904
BmeT110I CYCGRG 1 cut(s) 411
BmgT120I GGNCC 5 cut(s) 196, 508, 613, 645, 904
BmiI GGNNCC 4 cut(s) 436, 615, 647, 906
BmrFI CCNGG 1 cut(s) 672
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 2 cut(s) 178, 943
BmuI ACTGGG 1 cut(s) 168
BplI GAGNNNNNCTC 4 cut(s) 237, 269, 693, 725
BpmI CTGGAG 1 cut(s) 264
BsaI GGTCTC 1 cut(s) 360
BsaJI CCNNGG 3 cut(s) 410, 670, 769
BsaWI WCCGGW 1 cut(s) 77
Bse118I RCCGGY 2 cut(s) 275, 487
Bse1I ACTGG 2 cut(s) 174, 868
Bse21I CCTNAGG 2 cut(s) 504, 609
Bse3DI GCAATG 1 cut(s) 835
BseBI CCWGG 1 cut(s) 672
BseDI CCNNGG 3 cut(s) 410, 670, 769
BseGI GGATG 3 cut(s) 169, 841, 845
BseMI GCAATG 1 cut(s) 835
BseMII CTCAG 3 cut(s) 285, 453, 495
BseNI ACTGG 2 cut(s) 174, 868
BseRI GAGGAG 2 cut(s) 261, 825
BseXI GCAGC 2 cut(s) 226, 948
BshFI GGCC 1 cut(s) 944
BsiHKCI CYCGRG 1 cut(s) 411
BsiSI CCGG 3 cut(s) 78, 276, 488
BslFI GGGAC 2 cut(s) 52, 890
BsmAI GTCTC 4 cut(s) 284, 360, 568, 696
BsmFI GGGAC 2 cut(s) 52, 890
BsnI GGCC 1 cut(s) 944
Bso31I GGTCTC 1 cut(s) 360
BsoBI CYCGRG 1 cut(s) 411
Bsp1407I TGTACA 1 cut(s) 133
Bsp143I GATC 4 cut(s) 120, 158, 434, 604
BspACI CCGC 2 cut(s) 479, 643
BspANI GGCC 1 cut(s) 944
BspCNI CTCAG 3 cut(s) 286, 452, 496
BspHI TCATGA 2 cut(s) 147, 576
BspLI GGNNCC 4 cut(s) 436, 615, 647, 906
BspPI GGATC 4 cut(s) 153, 429, 442, 599
BspTI CTTAAG 1 cut(s) 371
BspTNI GGTCTC 1 cut(s) 360
BsrDI GCAATG 1 cut(s) 835
BsrFI RCCGGY 2 cut(s) 275, 487
BsrGI TGTACA 1 cut(s) 133
BsrI ACTGG 2 cut(s) 174, 868
BssAI RCCGGY 2 cut(s) 275, 487
BssECI CCNNGG 3 cut(s) 410, 670, 769
BssMI GATC 4 cut(s) 120, 158, 434, 604
Bst2UI CCWGG 1 cut(s) 672
Bst4CI ACNGT 3 cut(s) 655, 773, 913
BstAFI CTTAAG 1 cut(s) 371
BstAUI TGTACA 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 711
BstDEI CTNAG 6 cut(s) 294, 391, 439, 504, 609, 714
BstDSI CCRYGG 1 cut(s) 769
BstF5I GGATG 3 cut(s) 169, 841, 845
BstKTI GATC 4 cut(s) 123, 161, 437, 607
BstMAI GTCTC 4 cut(s) 284, 360, 568, 696
BstMBI GATC 4 cut(s) 120, 158, 434, 604
BstMWI GCNNNNNNNGC 1 cut(s) 497
BstNI CCWGG 1 cut(s) 672
BstSCI CCNGG 1 cut(s) 670
BstV1I GCAGC 2 cut(s) 226, 948
BstX2I RGATCY 3 cut(s) 158, 434, 604
BstYI RGATCY 3 cut(s) 158, 434, 604
Bsu36I CCTNAGG 2 cut(s) 504, 609
BsuRI GGCC 1 cut(s) 944
BtgI CCRYGG 1 cut(s) 769
BtsCI GGATG 3 cut(s) 169, 841, 845
Cac8I GCNNGC 1 cut(s) 711
CciI TCATGA 2 cut(s) 147, 576
Cfr10I RCCGGY 2 cut(s) 275, 487
Cfr13I GGNCC 5 cut(s) 196, 508, 613, 645, 904
Csp6I GTAC 3 cut(s) 75, 134, 680
CviAII CATG 3 cut(s) 148, 577, 940
CviJI RGCY 4 cut(s) 275, 376, 491, 944
CviKI_1 RGCY 4 cut(s) 275, 376, 491, 944
CviQI GTAC 3 cut(s) 75, 134, 680
DdeI CTNAG 6 cut(s) 294, 391, 439, 504, 609, 714
DpnI GATC 4 cut(s) 122, 160, 436, 606
DpnII GATC 4 cut(s) 120, 158, 434, 604
DraI TTTAAA 1 cut(s) 900
EaeI YGGCCR 1 cut(s) 942
Eco31I GGTCTC 1 cut(s) 360
Eco32I GATATC 1 cut(s) 324
Eco47I GGWCC 5 cut(s) 196, 508, 613, 645, 904
Eco81I CCTNAGG 2 cut(s) 504, 609
Eco88I CYCGRG 1 cut(s) 411
EcoO109I RGGNCCY 4 cut(s) 196, 508, 613, 904
EcoRII CCWGG 1 cut(s) 670
EcoRV GATATC 1 cut(s) 324
EcoT22I ATGCAT 1 cut(s) 224
FaeI CATG 3 cut(s) 151, 580, 943
FalI AAGNNNNNCTT 2 cut(s) 880, 912
FaqI GGGAC 2 cut(s) 52, 890
FatI CATG 3 cut(s) 147, 576, 939
FauI CCCGC 1 cut(s) 472
Fnu4HI GCNGC 2 cut(s) 240, 937
FokI GGATG 3 cut(s) 156, 828, 832
Fsp4HI GCNGC 2 cut(s) 240, 937
GluI GCNGC 2 cut(s) 240, 937
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 1 cut(s) 944
HapII CCGG 3 cut(s) 78, 276, 488
Hin1II CATG 3 cut(s) 151, 580, 943
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 2 cut(s) 443, 561
HpaII CCGG 3 cut(s) 78, 276, 488
HphI GGTGA 1 cut(s) 427
Hpy166II GTNNAC 1 cut(s) 838
Hpy188I TCNGA 3 cut(s) 442, 517, 757
Hpy188III TCNNGA 6 cut(s) 106, 148, 202, 327, 577, 781
Hpy8I GTNNAC 1 cut(s) 838
HpyCH4III ACNGT 3 cut(s) 655, 773, 913
HpyCH4V TGCA 5 cut(s) 222, 270, 386, 500, 542
HpyF10VI GCNNNNNNNGC 1 cut(s) 497
HpyF3I CTNAG 6 cut(s) 294, 391, 439, 504, 609, 714
Hsp92II CATG 3 cut(s) 151, 580, 943
Kzo9I GATC 4 cut(s) 120, 158, 434, 604
LmnI GCTCC 2 cut(s) 533, 587
Lsp1109I GCAGC 2 cut(s) 226, 948
LweI GCATC 2 cut(s) 178, 943
MaeIII GTNAC 1 cut(s) 444
MalI GATC 4 cut(s) 122, 160, 436, 606
MboI GATC 4 cut(s) 120, 158, 434, 604
MboII GAAGA 5 cut(s) 152, 301, 614, 796, 872
MfeI CAATTG 1 cut(s) 317
MflI RGATCY 3 cut(s) 158, 434, 604
MlsI TGGCCA 1 cut(s) 944
MluCI AATT 9 cut(s) 185, 317, 636, 744, 750, 759, 787, 855, 959
MluNI TGGCCA 1 cut(s) 944
MlyI GAGTC 2 cut(s) 452, 570
MmeI TCCRAC 1 cut(s) 565
Mox20I TGGCCA 1 cut(s) 944
Mph1103I ATGCAT 1 cut(s) 224
MscI TGGCCA 1 cut(s) 944
MseI TTAA 5 cut(s) 96, 372, 762, 899, 962
MslI CAYNNNNRTG 1 cut(s) 227
Msp20I TGGCCA 1 cut(s) 944
MspCI CTTAAG 1 cut(s) 371
MspI CCGG 3 cut(s) 78, 276, 488
MspR9I CCNGG 1 cut(s) 672
MunI CAATTG 1 cut(s) 317
MvaI CCWGG 1 cut(s) 672
MwoI GCNNNNNNNGC 1 cut(s) 497
NdeII GATC 4 cut(s) 120, 158, 434, 604
NlaIII CATG 3 cut(s) 151, 580, 943
NlaIV GGNNCC 4 cut(s) 436, 615, 647, 906
NmuCI GTSAC 1 cut(s) 444
NsiI ATGCAT 1 cut(s) 224
PagI TCATGA 2 cut(s) 147, 576
PkrI GCNGC 2 cut(s) 241, 938
PleI GAGTC 2 cut(s) 451, 569
PpsI GAGTC 2 cut(s) 451, 569
PpuMI RGGWCCY 4 cut(s) 196, 508, 613, 904
Psp5II RGGWCCY 4 cut(s) 196, 508, 613, 904
Psp6I CCWGG 1 cut(s) 670
PspGI CCWGG 1 cut(s) 670
PspN4I GGNNCC 4 cut(s) 436, 615, 647, 906
PspPI GGNCC 5 cut(s) 196, 508, 613, 645, 904
PspPPI RGGWCCY 4 cut(s) 196, 508, 613, 904
PsuI RGATCY 3 cut(s) 158, 434, 604
RsaI GTAC 3 cut(s) 76, 135, 681
RsaNI GTAC 3 cut(s) 75, 134, 680
RseI CAYNNNNRTG 1 cut(s) 227
SaqAI TTAA 5 cut(s) 96, 372, 762, 899, 962
SatI GCNGC 2 cut(s) 240, 937
Sau3AI GATC 4 cut(s) 120, 158, 434, 604
Sau96I GGNCC 5 cut(s) 196, 508, 613, 645, 904
SchI GAGTC 2 cut(s) 452, 570
ScrFI CCNGG 1 cut(s) 672
SfaNI GCATC 2 cut(s) 178, 943
SinI GGWCC 5 cut(s) 196, 508, 613, 645, 904
SmiMI CAYNNNNRTG 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 9 cut(s) 185, 317, 636, 744, 750, 759, 787, 855, 959
SsiI CCGC 2 cut(s) 479, 643
StyD4I CCNGG 1 cut(s) 670
TaaI ACNGT 3 cut(s) 655, 773, 913
TaqI TCGA 1 cut(s) 105
TasI AATT 9 cut(s) 185, 317, 636, 744, 750, 759, 787, 855, 959
TatI WGTACW 1 cut(s) 133
Tru1I TTAA 5 cut(s) 96, 372, 762, 899, 962
Tru9I TTAA 5 cut(s) 96, 372, 762, 899, 962
TseFI GTSAC 1 cut(s) 444
TseI GCWGC 2 cut(s) 239, 936
Tsp45I GTSAC 1 cut(s) 444
TspDTI ATGAA 5 cut(s) 91, 141, 164, 365, 635
Vha464I CTTAAG 1 cut(s) 371
VpaK11BI GGWCC 5 cut(s) 196, 508, 613, 645, 904
XapI RAATTY 1 cut(s) 787
Zsp2I ATGCAT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.