Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Forward (+)

64959647 .. 64962187

Gene Structure 2541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG457100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGAGAGGTATGAGATTGTGAAGGATATTGGGTCTGGGAATTTTGGGGTGGCAAGGTTGGTCAGAGATAAGTGGACCAGAGAACTCTTTGCTGTTAAGTTCATTGAGAGAGGCCAGAAGTCACTACTGCAGTCTCAGCCAAAATCAACTGTAGGAACACCAGCCTATATTGCTCCTGAGGTCCTATCTAAAAAGCAATATGATGGAAAAAGAATAACAATGGCAGGGATTAAAAACCACCCTTGGTTCTTAAAGAACTTACCCATGGAACTGATGGAAGGAGGAAGTTGGCAGAGCAATGATGTAAATATTCCATCTCAAAGCACTGAAGAAGTTATGTCCATAATTCAAGAGGCAAGAAAATCAGTTCAGTCCCCAAACGCAGTTACGCATCTCATCGAAGGCAGCATGGATCTTGATGATTTGGATGCTGAAGTTGAAGACATTGAAACAAGTGGTGATTTTGTATGTCACGTGAGTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

161

Amino Acids

18.03

Weight (kDa)

5.11

Isoelectric Point (pI)

54.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	420
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	2 cut(s)	348, 453
AcvI	CACGTG	1 cut(s)	475
AgsI	TTSAA	3 cut(s)	350, 440, 449
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	420
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	405
ApoI	RAATTY	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	75, 181
AsuHPI	GGTGA	1 cut(s)	470
AvaII	GGWCC	2 cut(s)	75, 181
AxyI	CCTNAGG	1 cut(s)	177
BbrPI	CACGTG	1 cut(s)	475
BbsI	GAAGAC	1 cut(s)	447
BbvI	GCAGC	1 cut(s)	417
BccI	CCATC	3 cut(s)	197, 268, 322
BcoDI	GTCTC	1 cut(s)	138
BfmI	CTRYAG	2 cut(s)	128, 150
BisI	GCNGC	1 cut(s)	406
BlsI	GCNGC	1 cut(s)	407
Bme18I	GGWCC	2 cut(s)	75, 181
BmgT120I	GGNCC	2 cut(s)	75, 181
BmsI	GCATC	2 cut(s)	400, 418
BpiI	GAAGAC	1 cut(s)	447
BsaAI	YACGTR	1 cut(s)	475
BsaJI	CCNNGG	2 cut(s)	242, 264
Bse21I	CCTNAGG	1 cut(s)	177
Bse3DI	GCAATG	1 cut(s)	304
BseDI	CCNNGG	2 cut(s)	242, 264
BseGI	GGATG	1 cut(s)	433
BseMI	GCAATG	1 cut(s)	304
BseMII	CTCAG	2 cut(s)	149, 168
BseXI	GCAGC	1 cut(s)	417
BshFI	GGCC	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	358
BsnI	GGCC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	412
Bsp19I	CCATGG	1 cut(s)	264
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	2 cut(s)	148, 169
BspMAI	CTGCAG	1 cut(s)	132
BspPI	GGATC	1 cut(s)	420
BsrDI	GCAATG	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	242, 264
BssMI	GATC	1 cut(s)	412
BssT1I	CCWWGG	2 cut(s)	242, 264
Bst4CI	ACNGT	1 cut(s)	151
BstBAI	YACGTR	1 cut(s)	475
BstDEI	CTNAG	2 cut(s)	135, 177
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	433
BstKTI	GATC	1 cut(s)	415
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 170
BstSFI	CTRYAG	2 cut(s)	128, 150
BstV1I	GCAGC	1 cut(s)	417
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
Bsu36I	CCTNAGG	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	433
BtsIMutI	CAGTG	1 cut(s)	324
Cfr13I	GGNCC	2 cut(s)	75, 181
CviAII	CATG	2 cut(s)	265, 409
CviJI	RGCY	3 cut(s)	114, 139, 164
CviKI_1	RGCY	3 cut(s)	114, 139, 164
DdeI	CTNAG	2 cut(s)	135, 177
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
Eco130I	CCWWGG	2 cut(s)	242, 264
Eco47I	GGWCC	2 cut(s)	75, 181
Eco57I	CTGAAG	2 cut(s)	348, 453
Eco72I	CACGTG	1 cut(s)	475
Eco81I	CCTNAGG	1 cut(s)	177
EcoO109I	RGGNCCY	1 cut(s)	181
EcoT14I	CCWWGG	2 cut(s)	242, 264
ErhI	CCWWGG	2 cut(s)	242, 264
FaeI	CATG	2 cut(s)	268, 412
FaiI	YATR	8 cut(s)	12, 168, 201, 266, 338, 344, 410, 469
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	2 cut(s)	264, 408
Fnu4HI	GCNGC	1 cut(s)	406
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	1 cut(s)	406
GluI	GCNGC	1 cut(s)	406
HaeIII	GGCC	1 cut(s)	114
Hin1II	CATG	2 cut(s)	268, 412
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	1 cut(s)	65
Hpy188III	TCNNGA	3 cut(s)	176, 350, 416
Hpy8I	GTNNAC	1 cut(s)	75
HpyAV	CCTTC	3 cut(s)	16, 272, 395
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 170
HpyF3I	CTNAG	2 cut(s)	135, 177
HpySE526I	ACGT	1 cut(s)	474
Hsp92II	CATG	2 cut(s)	268, 412
Kzo9I	GATC	1 cut(s)	412
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	6 cut(s)	21, 91, 128, 174, 189, 210
Lsp1109I	GCAGC	1 cut(s)	417
LweI	GCATC	2 cut(s)	400, 418
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	3 cut(s)	120, 385, 470
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MboII	GAAGA	2 cut(s)	341, 452
MflI	RGATCY	1 cut(s)	412
MluCI	AATT	2 cut(s)	40, 345
MnlI	CCTC	4 cut(s)	104, 172, 275, 346
MseI	TTAA	4 cut(s)	96, 231, 251, 484
MwoI	GCNNNNNNNGC	2 cut(s)	136, 170
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	2 cut(s)	268, 412
NmuCI	GTSAC	2 cut(s)	120, 470
PkrI	GCNGC	1 cut(s)	407
PmaCI	CACGTG	1 cut(s)	475
PmlI	CACGTG	1 cut(s)	475
Ppu21I	YACGTR	1 cut(s)	475
PpuMI	RGGWCCY	1 cut(s)	181
Psp5II	RGGWCCY	1 cut(s)	181
PspCI	CACGTG	1 cut(s)	475
PspPI	GGNCC	2 cut(s)	75, 181
PspPPI	RGGWCCY	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	132
PsuI	RGATCY	1 cut(s)	412
SaqAI	TTAA	4 cut(s)	96, 231, 251, 484
SatI	GCNGC	1 cut(s)	406
Sau3AI	GATC	1 cut(s)	412
Sau96I	GGNCC	2 cut(s)	75, 181
SetI	ASST	4 cut(s)	11, 59, 183, 477
SfaNI	GCATC	2 cut(s)	400, 418
SfcI	CTRYAG	2 cut(s)	128, 150
SinI	GGWCC	2 cut(s)	75, 181
Sse9I	AATT	2 cut(s)	40, 345
SspI	AATATT	1 cut(s)	310
StyI	CCWWGG	2 cut(s)	242, 264
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	1 cut(s)	399
TasI	AATT	2 cut(s)	40, 345
Tru1I	TTAA	4 cut(s)	96, 231, 251, 484
Tru9I	TTAA	4 cut(s)	96, 231, 251, 484
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	2 cut(s)	120, 470
TseI	GCWGC	1 cut(s)	405
Tsp45I	GTSAC	2 cut(s)	120, 470
TspDTI	ATGAA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	331
VpaK11BI	GGWCC	2 cut(s)	75, 181
XapI	RAATTY	1 cut(s)	40
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.