Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Reverse (-)

5503502 .. 5506741

Gene Structure 3240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00222470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGAGAAGTATGAGGTTGTGAAAGATATTGGGTCTGGGAATTTTGGTGTAGCGAGGCTGGTCAGAGACAAGAATACCCAAGAACTCTTAGCTGTTAAGTTCATTGAGAGAGGCCTTAAGCAAATATGTCATAGAGACCTTAAGCTTGAAAATACACTCTTAGATGACAGCGCAGCGCCTCGTGTGAAAATATGTGATTTTGGATATTCAAAGTCATTACTGAGTTCTCTGCCAAAATCTACTGTGGGAACACCTGCTTATATTGCACCTGAAGTTCTATCTAAAAAACAATATGATGGACAGATTGCAGATGTTTGGTCTTGTGGAGTCACATTATATGTCATGCTCGTTGGAGCATATCCCTTTGAAGATCCTAAGGACCCTATGAACTTCAGAAAAACAATTCGGCGGATCCTTACTGTACGCTACGTAATCCCGGACAGTGTGCGAATTTCTGTGGAGTGTAGACACCTGTTGTCTAAGATTTTTGTTGCAAACCCGGAAAAGAGAATAAAAATTCCAGAAATTAAGACCCACCGTTGGTTTGCAAAGAACTTACCTGTGGAAATGAAGGAAGGAGGAACTTGGGAGAATAATGCTGTAAACACACCATCCCAAAGCATTGAAGAAGTTCAGTCCATAATAAAAGAGGCAAGAAAACCTTTGAAGGTCCCAACTGTCAGTAGGCATTGCGTTGGAAGCAGCATGGCTATTGATGATGCTGATGTTGATGGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

246

Amino Acids

27.68

Weight (kDa)

8.98

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	40 - 182	8.5e-36	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	40 - 177	1e-14	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	262
Acc36I	ACCTGC	1 cut(s)	262
AccI	GTMKAC	1 cut(s)	466
AciI	CCGC	1 cut(s)	409
AclWI	GGATC	3 cut(s)	365, 406, 419
AcsI	RAATTY	3 cut(s)	40, 450, 516
AcuI	CTGAAG	2 cut(s)	291, 376
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	1 cut(s)	540
AflII	CTTAAG	2 cut(s)	116, 140
AgsI	TTSAA	5 cut(s)	149, 210, 368, 626, 667
AluBI	AGCT	2 cut(s)	92, 145
AluI	AGCT	2 cut(s)	92, 145
Alw26I	GTCTC	2 cut(s)	60, 129
AlwI	GGATC	3 cut(s)	365, 406, 419
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	2 cut(s)	173, 702
ApoI	RAATTY	3 cut(s)	40, 450, 516
Asp700I	GAANNNNTTC	1 cut(s)	630
AspLEI	GCGC	2 cut(s)	173, 178
AspS9I	GGNCC	2 cut(s)	379, 670
AsuC2I	CCSGG	2 cut(s)	437, 500
AvaII	GGWCC	2 cut(s)	379, 670
AxyI	CCTNAGG	1 cut(s)	375
BamHI	GGATCC	1 cut(s)	411
BauI	CACGAG	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	185, 714
BccI	CCATC	3 cut(s)	290, 619, 725
BcnI	CCSGG	2 cut(s)	437, 500
BcoDI	GTCTC	2 cut(s)	60, 129
BfoI	RGCGCY	1 cut(s)	179
BfrI	CTTAAG	2 cut(s)	116, 140
BfuAI	ACCTGC	1 cut(s)	262
BisI	GCNGC	2 cut(s)	174, 703
BlsI	GCNGC	2 cut(s)	175, 704
Bme1390I	CCNGG	2 cut(s)	437, 500
Bme18I	GGWCC	2 cut(s)	379, 670
BmgT120I	GGNCC	2 cut(s)	379, 670
BmiI	GGNNCC	3 cut(s)	381, 413, 672
BmrFI	CCNGG	2 cut(s)	437, 500
BmsI	GCATC	1 cut(s)	709
BpuMI	CCSGG	2 cut(s)	437, 500
BsaAI	YACGTR	1 cut(s)	430
BsaI	GGTCTC	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	540
Bse21I	CCTNAGG	1 cut(s)	375
Bse3DI	GCAATG	1 cut(s)	688
BseGI	GGATG	1 cut(s)	611
BseLI	CCNNNNNNNGG	1 cut(s)	540
BseMI	GCAATG	1 cut(s)	688
BseMII	CTCAG	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	185, 714
BshFI	GGCC	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	437, 500
BslFI	GGGAC	1 cut(s)	656
BslI	CCNNNNNNNGG	1 cut(s)	540
BsmAI	GTCTC	2 cut(s)	60, 129
BsmFI	GGGAC	1 cut(s)	656
BsnI	GGCC	1 cut(s)	114
Bso31I	GGTCTC	1 cut(s)	129
Bsp143I	GATC	2 cut(s)	370, 411
BspACI	CCGC	1 cut(s)	409
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	213
BspLI	GGNNCC	3 cut(s)	381, 413, 672
BspMI	ACCTGC	1 cut(s)	262
BspPI	GGATC	3 cut(s)	365, 406, 419
BspTI	CTTAAG	2 cut(s)	116, 140
BspTNI	GGTCTC	1 cut(s)	129
BsrDI	GCAATG	1 cut(s)	688
BssMI	GATC	2 cut(s)	370, 411
BssSI	CACGAG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	180
Bst4CI	ACNGT	5 cut(s)	244, 421, 443, 539, 679
BstAFI	CTTAAG	2 cut(s)	116, 140
BstBAI	YACGTR	1 cut(s)	430
BstDEI	CTNAG	5 cut(s)	88, 160, 221, 375, 480
BstF5I	GGATG	1 cut(s)	611
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	2 cut(s)	173, 178
BstKTI	GATC	2 cut(s)	373, 414
BstMAI	GTCTC	2 cut(s)	60, 129
BstMBI	GATC	2 cut(s)	370, 411
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 699
BstSCI	CCNGG	2 cut(s)	435, 498
BstSNI	TACGTA	1 cut(s)	430
BstV1I	GCAGC	2 cut(s)	185, 714
BstX2I	RGATCY	2 cut(s)	370, 411
BstYI	RGATCY	2 cut(s)	370, 411
Bsu36I	CCTNAGG	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	611
BtsIMutI	CAGTG	1 cut(s)	448
BveI	ACCTGC	1 cut(s)	262
CfoI	GCGC	2 cut(s)	173, 178
Cfr13I	GGNCC	2 cut(s)	379, 670
Csp6I	GTAC	1 cut(s)	422
CviAII	CATG	2 cut(s)	343, 706
CviJI	RGCY	5 cut(s)	58, 92, 114, 145, 710
CviKI_1	RGCY	5 cut(s)	58, 92, 114, 145, 710
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	5 cut(s)	88, 160, 221, 375, 480
DpnI	GATC	2 cut(s)	372, 413
DpnII	GATC	2 cut(s)	370, 411
EciI	GGCGGA	1 cut(s)	424
Eco105I	TACGTA	1 cut(s)	430
Eco147I	AGGCCT	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	129
Eco47I	GGWCC	2 cut(s)	379, 670
Eco57I	CTGAAG	2 cut(s)	291, 376
Eco81I	CCTNAGG	1 cut(s)	375
EcoO109I	RGGNCCY	2 cut(s)	379, 670
FaeI	CATG	2 cut(s)	346, 709
FalI	AAGNNNNNCTT	2 cut(s)	646, 678
FaqI	GGGAC	1 cut(s)	656
FatI	CATG	2 cut(s)	342, 705
FblI	GTMKAC	1 cut(s)	466
Fnu4HI	GCNGC	2 cut(s)	174, 703
FokI	GGATG	1 cut(s)	598
Fsp4HI	GCNGC	2 cut(s)	174, 703
GlaI	GCGC	2 cut(s)	172, 177
GluI	GCNGC	2 cut(s)	174, 703
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	2 cut(s)	437, 500
HhaI	GCGC	2 cut(s)	173, 178
Hin1II	CATG	2 cut(s)	346, 709
Hin6I	GCGC	2 cut(s)	171, 176
HinP1I	GCGC	2 cut(s)	171, 176
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	1 cut(s)	327
HpaII	CCGG	2 cut(s)	437, 500
Hpy166II	GTNNAC	2 cut(s)	467, 604
Hpy188I	TCNGA	2 cut(s)	65, 395
Hpy188III	TCNNGA	1 cut(s)	521
Hpy8I	GTNNAC	2 cut(s)	467, 604
HpyAV	CCTTC	3 cut(s)	565, 569, 661
HpyCH4III	ACNGT	5 cut(s)	244, 421, 443, 539, 679
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	4 cut(s)	266, 308, 494, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 699
HpyF3I	CTNAG	5 cut(s)	88, 160, 221, 375, 480
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	2 cut(s)	346, 709
HspAI	GCGC	2 cut(s)	171, 176
Kzo9I	GATC	2 cut(s)	370, 411
LmnI	GCTCC	1 cut(s)	353
LpnPI	CCDG	9 cut(s)	21, 44, 267, 282, 450, 485, 513, 534, 573
Lsp1109I	GCAGC	2 cut(s)	185, 714
LweI	GCATC	1 cut(s)	709
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	2 cut(s)	372, 413
MboI	GATC	2 cut(s)	370, 411
MboII	GAAGA	2 cut(s)	380, 638
MflI	RGATCY	2 cut(s)	370, 411
MluCI	AATT	6 cut(s)	40, 402, 450, 516, 525, 736
MlyI	GAGTC	1 cut(s)	336
MmeI	TCCRAC	2 cut(s)	331, 676
MnlI	CCTC	6 cut(s)	7, 48, 104, 189, 572, 643
MroXI	GAANNNNTTC	1 cut(s)	630
MseI	TTAA	5 cut(s)	96, 117, 141, 528, 739
MspCI	CTTAAG	2 cut(s)	116, 140
MspI	CCGG	2 cut(s)	437, 500
MspR9I	CCNGG	2 cut(s)	437, 500
MteI	GCGCNGCGC	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	263, 699
NciI	CCSGG	2 cut(s)	437, 500
NdeII	GATC	2 cut(s)	370, 411
NlaIII	CATG	2 cut(s)	346, 709
NlaIV	GGNNCC	3 cut(s)	381, 413, 672
NmuCI	GTSAC	1 cut(s)	328
PaqCI	CACCTGC	1 cut(s)	262
PceI	AGGCCT	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	630
PfoI	TCCNGGA	1 cut(s)	435
PkrI	GCNGC	2 cut(s)	175, 704
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
Ppu21I	YACGTR	1 cut(s)	430
PpuMI	RGGWCCY	2 cut(s)	379, 670
Psp5II	RGGWCCY	2 cut(s)	379, 670
PspN4I	GGNNCC	3 cut(s)	381, 413, 672
PspPI	GGNCC	2 cut(s)	379, 670
PspPPI	RGGWCCY	2 cut(s)	379, 670
PsuI	RGATCY	2 cut(s)	370, 411
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
SaqAI	TTAA	5 cut(s)	96, 117, 141, 528, 739
SatI	GCNGC	2 cut(s)	174, 703
Sau3AI	GATC	2 cut(s)	370, 411
Sau96I	GGNCC	2 cut(s)	379, 670
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	2 cut(s)	437, 500
SfaNI	GCATC	1 cut(s)	709
SinI	GGWCC	2 cut(s)	379, 670
SmlI	CTYRAG	2 cut(s)	116, 140
SmoI	CTYRAG	2 cut(s)	116, 140
SnaBI	TACGTA	1 cut(s)	430
Sse9I	AATT	6 cut(s)	40, 402, 450, 516, 525, 736
SseBI	AGGCCT	1 cut(s)	114
SsiI	CCGC	1 cut(s)	409
StuI	AGGCCT	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	435, 498
TaaI	ACNGT	5 cut(s)	244, 421, 443, 539, 679
TaiI	ACGT	1 cut(s)	432
TasI	AATT	6 cut(s)	40, 402, 450, 516, 525, 736
Tru1I	TTAA	5 cut(s)	96, 117, 141, 528, 739
Tru9I	TTAA	5 cut(s)	96, 117, 141, 528, 739
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	2 cut(s)	173, 702
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	3 cut(s)	91, 401, 584
TspRI	CASTG	1 cut(s)	448
Vha464I	CTTAAG	2 cut(s)	116, 140
VpaK11BI	GGWCC	2 cut(s)	379, 670
XapI	RAATTY	3 cut(s)	40, 450, 516
XmiI	GTMKAC	1 cut(s)	466
XmnI	GAANNNNTTC	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.