Rorug07G0317400
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
32300235 .. 32300774
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0317400.1

Sequence Viewer

Length: 540 bp
ATGCAATCTGTTGGAAAATCTGAGAAGGGAAAAGAGCAAATTGGTAATGGGATGCAAGCTAGTCATAACCAAGGTGGGCATGACAACAAAAGAAATGGTACACACTCTCATAGAGTTACAAGAGAAAATTGCAGAGCCAGTTTAACTATTAGACTATGCAGGCAAACCGGGAAATTCCGAGCAGTTGAATTTATAATAGAACACAATCATGCCCTTGCCGCAATGGATATGAAATCCTTTCTAAGATCTAATCGAAAGGTTTCGGACCACGCTTTGACTCAAGCCACTCCTCTTAGGAAGGTGTCAGTGACCACTTGTCATGCATATGAATTATTGGTTTATCAAGCAGGTGGCCATGAGTTTATAGGATTCTCTATGAAAGATTTGTACAACAATGTTGATGAGGAATATAAGGAAATATATATCGATGGTCATGGCCAAGCTGCTATTAGTTTTATGAATTTGAAGGCTGCAAAGGACTCGGATTTCTACTACTTGTTTAGTGTTAATGTGGAGAGTAAGCTTTGTAATATGTTTTGA

Protein Analysis

179

Amino Acids

20.27

Weight (kDa)

8.86

Isoelectric Point (pI)

26.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 27 - 73 2.3e-06 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000609)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 194
AarI CACCTGC 1 cut(s) 338
Acc36I ACCTGC 1 cut(s) 338
AciI CCGC 1 cut(s) 219
AcoI YGGCCR 2 cut(s) 352, 436
AcsI RAATTY 3 cut(s) 173, 188, 460
AfaI GTAC 2 cut(s) 100, 389
AgsI TTSAA 2 cut(s) 188, 466
AhdI GACNNNNNGTC 1 cut(s) 315
AluBI AGCT 3 cut(s) 59, 443, 523
AluI AGCT 3 cut(s) 59, 443, 523
AoxI GGCC 2 cut(s) 352, 436
ApeKI GCWGC 2 cut(s) 443, 470
ApoI RAATTY 3 cut(s) 173, 188, 460
Asp700I GAANNNNTTC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 265
AsuC2I CCSGG 1 cut(s) 169
AvaII GGWCC 1 cut(s) 265
BalI TGGCCA 2 cut(s) 354, 438
BbvI GCAGC 2 cut(s) 430, 457
BccI CCATC 1 cut(s) 422
BcgI CGANNNNNNTGC 2 cut(s) 462, 496
BcnI CCSGG 1 cut(s) 169
BfaI CTAG 1 cut(s) 60
BfuAI ACCTGC 1 cut(s) 338
BglII AGATCT 1 cut(s) 245
BisI GCNGC 3 cut(s) 219, 444, 471
BlsI GCNGC 3 cut(s) 220, 445, 472
Bme1390I CCNGG 1 cut(s) 169
Bme18I GGWCC 1 cut(s) 265
BmeRI GACNNNNNGTC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 265
BmrFI CCNGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 169
Bsa29I ATCGAT 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 228
BseCI ATCGAT 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 1 cut(s) 57
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 279
BseXI GCAGC 2 cut(s) 430, 457
BshFI GGCC 2 cut(s) 354, 438
BshVI ATCGAT 1 cut(s) 426
BsiSI CCGG 1 cut(s) 168
BsnI GGCC 2 cut(s) 354, 438
Bsp1407I TGTACA 1 cut(s) 387
Bsp143I GATC 1 cut(s) 245
BspACI CCGC 1 cut(s) 219
BspANI GGCC 2 cut(s) 354, 438
BspCNI CTCAG 1 cut(s) 13
BspDI ATCGAT 1 cut(s) 426
BspMI ACCTGC 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 228
BsrGI TGTACA 1 cut(s) 387
BsrI ACTGG 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 1 cut(s) 245
BssT1I CCWWGG 1 cut(s) 70
BstAUI TGTACA 1 cut(s) 387
BstC8I GCNNGC 2 cut(s) 57, 161
BstDEI CTNAG 3 cut(s) 21, 242, 293
BstF5I GGATG 1 cut(s) 57
BstKTI GATC 1 cut(s) 248
BstMBI GATC 1 cut(s) 245
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 167
BstV1I GCAGC 2 cut(s) 430, 457
BstX2I RGATCY 1 cut(s) 245
BstYI RGATCY 1 cut(s) 245
Bsu15I ATCGAT 1 cut(s) 426
BsuRI GGCC 2 cut(s) 354, 438
BsuTUI ATCGAT 1 cut(s) 426
BtsCI GGATG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 312
BveI ACCTGC 1 cut(s) 338
Cac8I GCNNGC 2 cut(s) 57, 161
Cfr13I GGNCC 1 cut(s) 265
ClaI ATCGAT 1 cut(s) 426
Csp6I GTAC 2 cut(s) 99, 388
CviAII CATG 5 cut(s) 80, 209, 320, 356, 434
CviJI RGCY 8 cut(s) 59, 137, 284, 354, 438, 443, 470, 523
CviKI_1 RGCY 8 cut(s) 59, 137, 284, 354, 438, 443, 470, 523
CviQI GTAC 2 cut(s) 99, 388
DdeI CTNAG 3 cut(s) 21, 242, 293
DpnI GATC 1 cut(s) 247
DpnII GATC 1 cut(s) 245
DriI GACNNNNNGTC 1 cut(s) 315
EaeI YGGCCR 2 cut(s) 352, 436
Eam1105I GACNNNNNGTC 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 5 cut(s) 83, 212, 323, 359, 437
FatI CATG 5 cut(s) 79, 208, 319, 355, 433
FauNDI CATATG 1 cut(s) 325
Fnu4HI GCNGC 3 cut(s) 219, 444, 471
FokI GGATG 1 cut(s) 64
Fsp4HI GCNGC 3 cut(s) 219, 444, 471
FspBI CTAG 1 cut(s) 60
GluI GCNGC 3 cut(s) 219, 444, 471
HaeIII GGCC 2 cut(s) 354, 438
HapII CCGG 1 cut(s) 168
Hin1II CATG 5 cut(s) 83, 212, 323, 359, 437
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 3 cut(s) 277, 369, 479
HpaII CCGG 1 cut(s) 168
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 4 cut(s) 22, 179, 265, 484
Hpy8I GTNNAC 1 cut(s) 101
HpyAV CCTTC 3 cut(s) 19, 292, 460
HpyCH4V TGCA 6 cut(s) 4, 55, 132, 159, 323, 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 3 cut(s) 21, 242, 293
Hsp92II CATG 5 cut(s) 83, 212, 323, 359, 437
Kzo9I GATC 1 cut(s) 245
LpnPI CCDG 4 cut(s) 145, 151, 181, 333
Lsp1109I GCAGC 2 cut(s) 430, 457
LweI GCATC 1 cut(s) 42
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 2 cut(s) 115, 307
MalI GATC 1 cut(s) 247
MboI GATC 1 cut(s) 245
MflI RGATCY 1 cut(s) 245
MlsI TGGCCA 2 cut(s) 354, 438
MluCI AATT 6 cut(s) 39, 127, 173, 188, 329, 460
MluNI TGGCCA 2 cut(s) 354, 438
MlyI GAGTC 2 cut(s) 271, 473
MnlI CCTC 2 cut(s) 300, 397
Mox20I TGGCCA 2 cut(s) 354, 438
Mph1103I ATGCAT 1 cut(s) 325
MroXI GAANNNNTTC 1 cut(s) 259
MscI TGGCCA 2 cut(s) 354, 438
MseI TTAA 2 cut(s) 143, 507
MslI CAYNNNNRTG 2 cut(s) 207, 324
Msp20I TGGCCA 2 cut(s) 354, 438
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 1 cut(s) 169
NdeI CATATG 1 cut(s) 325
NdeII GATC 1 cut(s) 245
NlaIII CATG 5 cut(s) 83, 212, 323, 359, 437
NmuCI GTSAC 1 cut(s) 307
NsiI ATGCAT 1 cut(s) 325
PaqCI CACCTGC 1 cut(s) 338
PdmI GAANNNNTTC 1 cut(s) 259
PfeI GAWTC 1 cut(s) 369
PkrI GCNGC 3 cut(s) 220, 445, 472
PleI GAGTC 2 cut(s) 271, 473
PpsI GAGTC 2 cut(s) 271, 473
PsiI TTATAA 1 cut(s) 194
PspPI GGNCC 1 cut(s) 265
PsuI RGATCY 1 cut(s) 245
RsaI GTAC 2 cut(s) 100, 389
RsaNI GTAC 2 cut(s) 99, 388
RseI CAYNNNNRTG 2 cut(s) 207, 324
SaqAI TTAA 2 cut(s) 143, 507
SatI GCNGC 3 cut(s) 219, 444, 471
Sau3AI GATC 1 cut(s) 245
Sau96I GGNCC 1 cut(s) 265
SchI GAGTC 2 cut(s) 271, 473
ScrFI CCNGG 1 cut(s) 169
SetI ASST 7 cut(s) 61, 76, 261, 303, 352, 445, 525
SfaNI GCATC 1 cut(s) 42
SinI GGWCC 1 cut(s) 265
SmiMI CAYNNNNRTG 2 cut(s) 207, 324
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
Sse9I AATT 6 cut(s) 39, 127, 173, 188, 329, 460
SsiI CCGC 1 cut(s) 219
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 167
StyI CCWWGG 1 cut(s) 70
TaqI TCGA 2 cut(s) 253, 426
TasI AATT 6 cut(s) 39, 127, 173, 188, 329, 460
TatI WGTACW 1 cut(s) 387
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 1 cut(s) 369
Tru1I TTAA 2 cut(s) 143, 507
Tru9I TTAA 2 cut(s) 143, 507
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 2 cut(s) 443, 470
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 4 cut(s) 245, 342, 392, 473
TspRI CASTG 1 cut(s) 312
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 3 cut(s) 173, 188, 460
XmnI GAANNNNTTC 1 cut(s) 259
XspI CTAG 1 cut(s) 60
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.