Rmu_sc0004165.1_g000046
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004165.1
Physical Location & Seq
Forward (+)
158446 .. 160542
2097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004165.1_g000046.1.cds

Sequence Viewer

Length: 996 bp
atggagaggtatgagattttgcaggatattggagctgggaattttgcggtgacaaagttggtcagagaaaagagtagcggaaaactctattgtattaagttgattgagagaggcaagaagatagatgaaaatgttcaaagggaaatcatgaaccacagatccttgaagcaccccaatattgttgaatttaaagaggtcctgctgacaccaactcatctaggtatagtaatggagtatgctgcaggaggagaactgtatgagagaatttgcaaggctggtaaatttagtgagaatgaggcaaggtttttcttccagcaattgatatcaggacttacgtactgtcataaaatgcatatatgtcatagagatcttaagcttgaaaattcactcttagatggcggcacaacacctcgtgtgaaaatatgcgatttcggatactcaaagtcactacttcaatctcagccaaaatctgttgtgggaacaccaaattatattgcacctgaagtcctatctagaaaaaaatatgatggaaagatttcagatgtctggtcttgtggagtcaccttatttgtcatgatcttcggggcatatccctttgaagatcctcaggaccctttaaactttacaaaaacaattcggcgaattcttagtgtacactactcaatcccacaaaatatcggagtttccggggaatgtagacatctgttttctaaaatatttgtggcaaacccagaacagagaataacaatccctgaaattaagagccatccttggtttgtaaagaacttacctatggaaatgatggaaggaggtagttgggaaagcaatgcggtgaacaatccatcccaaagtgttgaagaagttcagtctataatacaacaggcaagaagacctttaaaggtcccaactgtcagtaggcatctcactggaagtagcatggctcttgatgaagctgatgttggaggtccagaaacaaatggtgattgtgtgcgctaa

Protein Analysis

331

Amino Acids

37.39

Weight (kDa)

8.33

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000609)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 697
AciI CCGC 4 cut(s) 47, 78, 399, 830
AclWI GGATC 2 cut(s) 153, 596
AcsI RAATTY 6 cut(s) 40, 185, 264, 281, 382, 642
AcuI CTGAAG 1 cut(s) 522
AdeI CACNNNGTG 1 cut(s) 413
AfaI GTAC 2 cut(s) 338, 654
AflII CTTAAG 1 cut(s) 371
AgsI TTSAA 7 cut(s) 137, 166, 185, 380, 455, 599, 857
AjuI GAANNNNNNNTTGG 2 cut(s) 942, 974
AloI GAACNNNNNNTCC 4 cut(s) 143, 175, 827, 859
AluBI AGCT 3 cut(s) 35, 376, 953
AluI AGCT 3 cut(s) 35, 376, 953
AlwI GGATC 2 cut(s) 153, 596
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 6 cut(s) 40, 185, 264, 281, 382, 642
Asp700I GAANNNNTTC 3 cut(s) 132, 535, 861
AspLEI GCGC 1 cut(s) 993
AspS9I GGNCC 4 cut(s) 196, 610, 901, 965
AsuC2I CCSGG 1 cut(s) 688
AsuHPI GGTGA 4 cut(s) 61, 553, 844, 992
AvaII GGWCC 4 cut(s) 196, 610, 901, 965
AxyI CCTNAGG 1 cut(s) 606
BauI CACGAG 1 cut(s) 411
BbsI GAAGAC 1 cut(s) 895
BbvI GCAGC 1 cut(s) 226
BccI CCATC 5 cut(s) 389, 521, 774, 796, 850
BciVI GTATCC 1 cut(s) 428
BcnI CCSGG 1 cut(s) 688
BfaI CTAG 2 cut(s) 218, 513
BfmI CTRYAG 1 cut(s) 240
BfrI CTTAAG 1 cut(s) 371
BfuI GTATCC 1 cut(s) 428
BglII AGATCT 1 cut(s) 367
BisI GCNGC 2 cut(s) 240, 400
BlsI GCNGC 2 cut(s) 241, 401
Bme1390I CCNGG 1 cut(s) 688
Bme18I GGWCC 4 cut(s) 196, 610, 901, 965
BmgT120I GGNCC 4 cut(s) 196, 610, 901, 965
BmiI GGNNCC 2 cut(s) 612, 903
BmrFI CCNGG 1 cut(s) 688
BmsI GCATC 1 cut(s) 928
BpiI GAAGAC 1 cut(s) 895
BpuMI CCSGG 1 cut(s) 688
BsaAI YACGTR 1 cut(s) 336
BsaJI CCNNGG 2 cut(s) 687, 770
Bse1I ACTGG 1 cut(s) 931
Bse21I CCTNAGG 1 cut(s) 606
Bse3DI GCAATG 1 cut(s) 832
BseDI CCNNGG 2 cut(s) 687, 770
BseGI GGATG 2 cut(s) 766, 842
BseMI GCAATG 1 cut(s) 832
BseMII CTCAG 2 cut(s) 473, 620
BseNI ACTGG 1 cut(s) 931
BseRI GAGGAG 1 cut(s) 261
BseXI GCAGC 1 cut(s) 226
BseYI CCCAGC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 687
BslFI GGGAC 1 cut(s) 887
BsmFI GGGAC 1 cut(s) 887
Bsp1407I TGTACA 1 cut(s) 652
Bsp143I GATC 4 cut(s) 158, 367, 576, 601
BspACI CCGC 4 cut(s) 47, 78, 399, 830
BspCNI CTCAG 2 cut(s) 472, 619
BspHI TCATGA 2 cut(s) 147, 573
BspLI GGNNCC 2 cut(s) 612, 903
BspMAI CTGCAG 1 cut(s) 244
BspPI GGATC 2 cut(s) 153, 596
BspTI CTTAAG 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 832
BsrGI TGTACA 1 cut(s) 652
BsrI ACTGG 1 cut(s) 931
BssECI CCNNGG 2 cut(s) 687, 770
BssMI GATC 4 cut(s) 158, 367, 576, 601
BssSI CACGAG 1 cut(s) 411
BssT1I CCWWGG 1 cut(s) 770
Bst2BI CACGAG 1 cut(s) 411
Bst4CI ACNGT 3 cut(s) 255, 341, 910
BstAFI CTTAAG 1 cut(s) 371
BstAUI TGTACA 1 cut(s) 652
BstBAI YACGTR 1 cut(s) 336
BstDEI CTNAG 4 cut(s) 391, 459, 606, 647
BstF5I GGATG 2 cut(s) 766, 842
BstHHI GCGC 1 cut(s) 993
BstKTI GATC 4 cut(s) 161, 370, 579, 604
BstMBI GATC 4 cut(s) 158, 367, 576, 601
BstSCI CCNGG 1 cut(s) 686
BstSFI CTRYAG 1 cut(s) 240
BstSNI TACGTA 1 cut(s) 336
BstV1I GCAGC 1 cut(s) 226
BstV2I GAAGAC 1 cut(s) 895
BstX2I RGATCY 3 cut(s) 158, 367, 601
BstYI RGATCY 3 cut(s) 158, 367, 601
Bsu36I CCTNAGG 1 cut(s) 606
BsuI GTATCC 1 cut(s) 428
BtsCI GGATG 2 cut(s) 766, 842
BtsIMutI CAGTG 1 cut(s) 924
CciI TCATGA 2 cut(s) 147, 573
CfoI GCGC 1 cut(s) 993
Cfr13I GGNCC 4 cut(s) 196, 610, 901, 965
Csp6I GTAC 2 cut(s) 337, 653
CviAII CATG 3 cut(s) 148, 574, 937
CviJI RGCY 7 cut(s) 35, 275, 376, 463, 765, 941, 953
CviKI_1 RGCY 7 cut(s) 35, 275, 376, 463, 765, 941, 953
CviQI GTAC 2 cut(s) 337, 653
DdeI CTNAG 4 cut(s) 391, 459, 606, 647
DpnI GATC 4 cut(s) 160, 369, 578, 603
DpnII GATC 4 cut(s) 158, 367, 576, 601
DraI TTTAAA 3 cut(s) 190, 618, 897
DraIII CACNNNGTG 1 cut(s) 413
Eco105I TACGTA 1 cut(s) 336
Eco130I CCWWGG 1 cut(s) 770
Eco32I GATATC 1 cut(s) 324
Eco47I GGWCC 4 cut(s) 196, 610, 901, 965
Eco57I CTGAAG 1 cut(s) 522
Eco81I CCTNAGG 1 cut(s) 606
EcoO109I RGGNCCY 3 cut(s) 196, 610, 901
EcoRI GAATTC 1 cut(s) 642
EcoRV GATATC 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 770
EcoT22I ATGCAT 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 770
FaeI CATG 3 cut(s) 151, 577, 940
FalI AAGNNNNNCTT 2 cut(s) 877, 909
FaqI GGGAC 1 cut(s) 887
FatI CATG 3 cut(s) 147, 573, 936
FblI GTMKAC 1 cut(s) 697
Fnu4HI GCNGC 2 cut(s) 240, 400
FokI GGATG 2 cut(s) 753, 829
Fsp4HI GCNGC 2 cut(s) 240, 400
FspBI CTAG 2 cut(s) 218, 513
GlaI GCGC 1 cut(s) 992
GluI GCNGC 2 cut(s) 240, 400
GsaI CCCAGC 1 cut(s) 39
HapII CCGG 1 cut(s) 687
HhaI GCGC 1 cut(s) 993
Hin1II CATG 3 cut(s) 151, 577, 940
Hin6I GCGC 1 cut(s) 991
HinP1I GCGC 1 cut(s) 991
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 1 cut(s) 558
HpaII CCGG 1 cut(s) 687
HphI GGTGA 4 cut(s) 61, 553, 844, 992
Hpy166II GTNNAC 4 cut(s) 653, 655, 698, 835
Hpy188I TCNGA 4 cut(s) 65, 434, 541, 680
Hpy188III TCNNGA 7 cut(s) 148, 327, 513, 574, 608, 944, 968
Hpy8I GTNNAC 4 cut(s) 653, 655, 698, 835
HpyAV CCTTC 1 cut(s) 800
HpyCH4III ACNGT 3 cut(s) 255, 341, 910
HpyCH4IV ACGT 1 cut(s) 335
HpyCH4V TGCA 5 cut(s) 22, 242, 270, 352, 497
HpyF3I CTNAG 4 cut(s) 391, 459, 606, 647
HpySE526I ACGT 1 cut(s) 335
Hsp92II CATG 3 cut(s) 151, 577, 940
HspAI GCGC 1 cut(s) 991
Kzo9I GATC 4 cut(s) 158, 367, 576, 601
LmnI GCTCC 1 cut(s) 32
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 1 cut(s) 928
MaeI CTAG 2 cut(s) 218, 513
MaeII ACGT 1 cut(s) 335
MaeIII GTNAC 3 cut(s) 49, 444, 559
MalI GATC 4 cut(s) 160, 369, 578, 603
MboI GATC 4 cut(s) 158, 367, 576, 601
MboII GAAGA 6 cut(s) 130, 301, 571, 611, 869, 900
MfeI CAATTG 1 cut(s) 317
MflI RGATCY 3 cut(s) 158, 367, 601
MlyI GAGTC 1 cut(s) 567
MmeI TCCRAC 1 cut(s) 940
MnlI CCTC 8 cut(s) 104, 187, 239, 289, 420, 615, 803, 956
Mph1103I ATGCAT 1 cut(s) 354
MroXI GAANNNNTTC 3 cut(s) 132, 535, 861
MseI TTAA 6 cut(s) 96, 189, 372, 617, 759, 896
MspCI CTTAAG 1 cut(s) 371
MspI CCGG 1 cut(s) 687
MspR9I CCNGG 1 cut(s) 688
MunI CAATTG 1 cut(s) 317
NciI CCSGG 1 cut(s) 688
NdeII GATC 4 cut(s) 158, 367, 576, 601
NlaIII CATG 3 cut(s) 151, 577, 940
NlaIV GGNNCC 2 cut(s) 612, 903
NmuCI GTSAC 3 cut(s) 49, 444, 559
NsiI ATGCAT 1 cut(s) 354
PagI TCATGA 2 cut(s) 147, 573
PdmI GAANNNNTTC 3 cut(s) 132, 535, 861
PkrI GCNGC 2 cut(s) 241, 401
PleI GAGTC 1 cut(s) 566
PpsI GAGTC 1 cut(s) 566
Ppu21I YACGTR 1 cut(s) 336
PpuMI RGGWCCY 3 cut(s) 196, 610, 901
Psp5II RGGWCCY 3 cut(s) 196, 610, 901
PspFI CCCAGC 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 612, 903
PspPI GGNCC 4 cut(s) 196, 610, 901, 965
PspPPI RGGWCCY 3 cut(s) 196, 610, 901
PstI CTGCAG 1 cut(s) 244
PsuI RGATCY 3 cut(s) 158, 367, 601
RsaI GTAC 2 cut(s) 338, 654
RsaNI GTAC 2 cut(s) 337, 653
SaqAI TTAA 6 cut(s) 96, 189, 372, 617, 759, 896
SatI GCNGC 2 cut(s) 240, 400
Sau3AI GATC 4 cut(s) 158, 367, 576, 601
Sau96I GGNCC 4 cut(s) 196, 610, 901, 965
SchI GAGTC 1 cut(s) 567
ScrFI CCNGG 1 cut(s) 688
SfaNI GCATC 1 cut(s) 928
SfcI CTRYAG 1 cut(s) 240
SinI GGWCC 4 cut(s) 196, 610, 901, 965
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
SnaBI TACGTA 1 cut(s) 336
SsiI CCGC 4 cut(s) 47, 78, 399, 830
SspI AATATT 2 cut(s) 178, 717
SspMI CTAG 2 cut(s) 218, 513
StyD4I CCNGG 1 cut(s) 686
StyI CCWWGG 1 cut(s) 770
TaaI ACNGT 3 cut(s) 255, 341, 910
TaiI ACGT 1 cut(s) 338
TatI WGTACW 1 cut(s) 652
TauI GCSGC 1 cut(s) 402
Tru1I TTAA 6 cut(s) 96, 189, 372, 617, 759, 896
Tru9I TTAA 6 cut(s) 96, 189, 372, 617, 759, 896
TscAI CASTG 1 cut(s) 931
TseFI GTSAC 3 cut(s) 49, 444, 559
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 3 cut(s) 49, 444, 559
TspDTI ATGAA 3 cut(s) 141, 164, 963
TspRI CASTG 1 cut(s) 931
Vha464I CTTAAG 1 cut(s) 371
VpaK11BI GGWCC 4 cut(s) 196, 610, 901, 965
XapI RAATTY 6 cut(s) 40, 185, 264, 281, 382, 642
XbaI TCTAGA 1 cut(s) 512
XmiI GTMKAC 1 cut(s) 697
XmnI GAANNNNTTC 3 cut(s) 132, 535, 861
XspI CTAG 2 cut(s) 218, 513
Zsp2I ATGCAT 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.