Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Reverse (-)

42779310 .. 42781740

Gene Structure 2431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G521800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGACAATTCTCTCTCACCAACCCTGTTTTTCACTTGTCCTCCTAAACCCTCCAAAAGGATTCATTTACAAGATAACAAGAGAGTGCATTTTGGGGTTCATTGTGTGTAGTGTTATGGAGAGGTATGAGATTGTGAAGGATATTGGGACTGGGAATTTTGGGGTGGCCAGGCTGGTCAGAGACAAGTTCACAAAAGAACTCTTTGCTGTCAAGTTCGTTGAAAGAGGCCAGAAGATAGCTGAACATGTGCGGAGGGAAATCATGAACCACAGATCATTGGAGCATCCCAATATTGTTCGATTCAAAGAGGTCCTGCTGACACCAACTCATCTAGCCATCGTAATGGAGTATGCGGAGGGGGGAGAACTCTTTGAGAGAATACACAGTGCTGGTAGATTTAGTGAGGATGAGGCAAGGTATTTCTTCCAGCAATTGATATCAGGAGTTAGTTACTGTCATTCAATGCACATCTGTCATAGGGACCTTAAGCTTGAAAATACACTCTTAGATGGCAGCACAGCACCCCGTGTGAAAATATGCGATTTCGGACACTCAAAGTCACTACTGCATTCTCAGCCAAAATCTGCTGTAGGAACACCAGCTTATATTGCACCTGAGGTCCTATCTAAAAGCAATTATGATGGAAAGACATTACAGATTTCAGATGTTTGGTCTTGCGGAGTCACCTTATATGTGATGATTGTTGGATCATACCCCTTTGAAGATCCTGAAGAACCTATAAACTTTAAAAAAACAATTGAGCGGATCCTTAGTGTACACTACTCAATTCCTGATTTTATCCGAGTTTCCAAGGAATGCAGACATCTCTTGTCTCTTATATTCGTAGCAAACCCCGAAAAGAGAATAACAATCCCAGAAATTGAAAGCCACCCTTGGTTCGTAAAGAACTTACCTATCGAACTTATGGAAGGAGTCGGAAGCTGGCAGTGCAAAGATGCAAATAATCCATCCCAAAGCGTTGAAGAAGTTCTATCAATAATACAACAGGCACGAAACCCTTCAGAAGAGGCCCCAAATGCTGCTGGTAGGCCTCTCATGGGAAGCAAAAGCATGGATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

361

Amino Acids

40.83

Weight (kDa)

6.71

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	763
AciI	CCGC	4 cut(s)	250, 353, 678, 763
AclWI	GGATC	4 cut(s)	715, 719, 760, 773
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	154
AcuI	CTGAAG	2 cut(s)	750, 1005
AdeI	CACNNNGTG	1 cut(s)	527
AfaI	GTAC	1 cut(s)	777
AfiI	CCNNNNNNNGG	2 cut(s)	56, 1058
AflII	CTTAAG	1 cut(s)	485
AflIII	ACRYGT	1 cut(s)	244
AgsI	TTSAA	7 cut(s)	221, 304, 462, 494, 722, 884, 983
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	4 cut(s)	239, 490, 602, 942
AluI	AGCT	4 cut(s)	239, 490, 602, 942
Alw26I	GTCTC	2 cut(s)	174, 837
AlwI	GGATC	4 cut(s)	715, 719, 760, 773
AoxI	GGCC	4 cut(s)	165, 226, 1029, 1049
ApeKI	GCWGC	2 cut(s)	513, 1040
ApoI	RAATTY	1 cut(s)	154
Asp700I	GAANNNNTTC	2 cut(s)	987, 1018
AspS9I	GGNCC	4 cut(s)	310, 481, 619, 1030
AsuHPI	GGTGA	2 cut(s)	8, 676
AvaII	GGWCC	3 cut(s)	310, 481, 619
AxyI	CCTNAGG	1 cut(s)	615
BalI	TGGCCA	1 cut(s)	167
BamHI	GGATCC	1 cut(s)	765
BbvI	GCAGC	2 cut(s)	525, 1027
BccI	CCATC	4 cut(s)	344, 503, 635, 976
BciT130I	CCWGG	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	174, 837
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	1 cut(s)	588
BfrI	CTTAAG	1 cut(s)	485
BisI	GCNGC	2 cut(s)	514, 1041
BlsI	GCNGC	2 cut(s)	515, 1042
Bme1390I	CCNGG	1 cut(s)	169
Bme18I	GGWCC	3 cut(s)	310, 481, 619
BmgT120I	GGNCC	4 cut(s)	310, 481, 619, 1030
BmiI	GGNNCC	3 cut(s)	482, 767, 1032
BmrFI	CCNGG	1 cut(s)	169
BmrI	ACTGGG	1 cut(s)	159
BmsI	GCATC	2 cut(s)	292, 946
BmuI	ACTGGG	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	810, 893
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 1058
Bse1I	ACTGG	1 cut(s)	154
Bse21I	CCTNAGG	1 cut(s)	615
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	810, 893
BseGI	GGATG	3 cut(s)	283, 412, 968
BseLI	CCNNNNNNNGG	2 cut(s)	56, 1058
BseMII	CTCAG	2 cut(s)	587, 606
BseNI	ACTGG	1 cut(s)	154
BseXI	GCAGC	2 cut(s)	525, 1027
BshFI	GGCC	4 cut(s)	167, 228, 1031, 1051
BslFI	GGGAC	2 cut(s)	160, 494
BslI	CCNNNNNNNGG	2 cut(s)	56, 1058
BsmAI	GTCTC	2 cut(s)	174, 837
BsmFI	GGGAC	2 cut(s)	160, 494
BsmI	GAATGC	2 cut(s)	568, 821
BsnI	GGCC	4 cut(s)	167, 228, 1031, 1051
Bsp1407I	TGTACA	1 cut(s)	775
Bsp143I	GATC	5 cut(s)	272, 707, 724, 765, 1075
BspACI	CCGC	4 cut(s)	250, 353, 678, 763
BspANI	GGCC	4 cut(s)	167, 228, 1031, 1051
BspCNI	CTCAG	2 cut(s)	586, 607
BspHI	TCATGA	1 cut(s)	261
BspLI	GGNNCC	3 cut(s)	482, 767, 1032
BspPI	GGATC	4 cut(s)	715, 719, 760, 773
BspTI	CTTAAG	1 cut(s)	485
BsrBI	CCGCTC	1 cut(s)	763
BsrGI	TGTACA	1 cut(s)	775
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	810, 893
BssMI	GATC	5 cut(s)	272, 707, 724, 765, 1075
BssT1I	CCWWGG	2 cut(s)	810, 893
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	2 cut(s)	386, 455
Bst6I	CTCTTC	1 cut(s)	1020
BstAFI	CTTAAG	1 cut(s)	485
BstAUI	TGTACA	1 cut(s)	775
BstC8I	GCNNGC	1 cut(s)	944
BstDEI	CTNAG	4 cut(s)	505, 573, 615, 770
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	3 cut(s)	283, 412, 968
BstKTI	GATC	5 cut(s)	275, 710, 727, 768, 1078
BstMAI	GTCTC	2 cut(s)	174, 837
BstMBI	GATC	5 cut(s)	272, 707, 724, 765, 1075
BstMWI	GCNNNNNNNGC	4 cut(s)	574, 608, 948, 1037
BstNI	CCWGG	1 cut(s)	169
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	167
BstSFI	CTRYAG	1 cut(s)	588
BstV1I	GCAGC	2 cut(s)	525, 1027
BstX2I	RGATCY	3 cut(s)	724, 765, 1075
BstXI	CCANNNNNNTGG	1 cut(s)	343
BstYI	RGATCY	3 cut(s)	724, 765, 1075
Bsu36I	CCTNAGG	1 cut(s)	615
BsuRI	GGCC	4 cut(s)	167, 228, 1031, 1051
BtsCI	GGATG	3 cut(s)	283, 412, 968
BtsI	GCAGTG	1 cut(s)	953
BtsIMutI	CAGTG	2 cut(s)	391, 953
Cac8I	GCNNGC	1 cut(s)	944
CciI	TCATGA	1 cut(s)	261
Cfr13I	GGNCC	4 cut(s)	310, 481, 619, 1030
Csp6I	GTAC	1 cut(s)	776
CviAII	CATG	4 cut(s)	245, 262, 1057, 1072
CviQI	GTAC	1 cut(s)	776
DdeI	CTNAG	4 cut(s)	505, 573, 615, 770
DpnI	GATC	5 cut(s)	274, 709, 726, 767, 1077
DpnII	GATC	5 cut(s)	272, 707, 724, 765, 1075
DraI	TTTAAA	1 cut(s)	748
DraIII	CACNNNGTG	1 cut(s)	527
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	1020
EarI	CTCTTC	1 cut(s)	1020
Eco130I	CCWWGG	2 cut(s)	810, 893
Eco147I	AGGCCT	1 cut(s)	1051
Eco32I	GATATC	1 cut(s)	438
Eco47I	GGWCC	3 cut(s)	310, 481, 619
Eco57I	CTGAAG	2 cut(s)	750, 1005
Eco81I	CCTNAGG	1 cut(s)	615
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoO109I	RGGNCCY	4 cut(s)	310, 481, 619, 1030
EcoRII	CCWGG	1 cut(s)	167
EcoRV	GATATC	1 cut(s)	438
EcoT14I	CCWWGG	2 cut(s)	810, 893
ErhI	CCWWGG	2 cut(s)	810, 893
FaeI	CATG	4 cut(s)	248, 265, 1060, 1075
FalI	AAGNNNNNCTT	2 cut(s)	877, 909
FaqI	GGGAC	2 cut(s)	160, 494
FatI	CATG	4 cut(s)	244, 261, 1056, 1071
Fnu4HI	GCNGC	2 cut(s)	514, 1041
FokI	GGATG	3 cut(s)	270, 419, 955
Fsp4HI	GCNGC	2 cut(s)	514, 1041
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	2 cut(s)	514, 1041
HaeIII	GGCC	4 cut(s)	167, 228, 1031, 1051
Hin1II	CATG	4 cut(s)	248, 265, 1060, 1075
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	4 cut(s)	60, 300, 681, 933
HphI	GGTGA	2 cut(s)	8, 676
Hpy166II	GTNNAC	3 cut(s)	189, 776, 778
Hpy188I	TCNGA	6 cut(s)	179, 548, 664, 803, 938, 1024
Hpy188III	TCNNGA	4 cut(s)	262, 441, 728, 791
Hpy8I	GTNNAC	3 cut(s)	189, 776, 778
HpyAV	CCTTC	3 cut(s)	130, 923, 1029
HpyCH4III	ACNGT	2 cut(s)	386, 455
HpyCH4V	TGCA	7 cut(s)	87, 466, 568, 611, 819, 951, 959
HpyF10VI	GCNNNNNNNGC	4 cut(s)	574, 608, 948, 1037
HpyF3I	CTNAG	4 cut(s)	505, 573, 615, 770
Hsp92II	CATG	4 cut(s)	248, 265, 1060, 1075
Kzo9I	GATC	5 cut(s)	272, 707, 724, 765, 1075
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	2 cut(s)	525, 1027
LweI	GCATC	2 cut(s)	292, 946
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	3 cut(s)	449, 558, 682
MalI	GATC	5 cut(s)	274, 709, 726, 767, 1077
MbiI	CCGCTC	1 cut(s)	763
MboI	GATC	5 cut(s)	272, 707, 724, 765, 1075
MboII	GAAGA	6 cut(s)	244, 415, 734, 743, 995, 1037
MfeI	CAATTG	2 cut(s)	431, 756
MflI	RGATCY	3 cut(s)	724, 765, 1075
MlsI	TGGCCA	1 cut(s)	167
MluCI	AATT	7 cut(s)	6, 154, 431, 634, 756, 786, 879
MluNI	TGGCCA	1 cut(s)	167
MlyI	GAGTC	2 cut(s)	690, 942
MmeI	TCCRAC	2 cut(s)	685, 916
Mox20I	TGGCCA	1 cut(s)	167
MroXI	GAANNNNTTC	2 cut(s)	987, 1018
MscI	TGGCCA	1 cut(s)	167
MseI	TTAA	2 cut(s)	486, 747
MslI	CAYNNNNRTG	1 cut(s)	341
Msp20I	TGGCCA	1 cut(s)	167
MspCI	CTTAAG	1 cut(s)	485
MspR9I	CCNGG	1 cut(s)	169
MunI	CAATTG	2 cut(s)	431, 756
Mva1269I	GAATGC	2 cut(s)	568, 821
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	4 cut(s)	574, 608, 948, 1037
NdeII	GATC	5 cut(s)	272, 707, 724, 765, 1075
NlaIII	CATG	4 cut(s)	248, 265, 1060, 1075
NlaIV	GGNNCC	3 cut(s)	482, 767, 1032
NmuCI	GTSAC	2 cut(s)	558, 682
NspI	RCATGY	1 cut(s)	248
PagI	TCATGA	1 cut(s)	261
PceI	AGGCCT	1 cut(s)	1051
PciI	ACATGT	1 cut(s)	244
PctI	GAATGC	2 cut(s)	568, 821
PdmI	GAANNNNTTC	2 cut(s)	987, 1018
PfeI	GAWTC	2 cut(s)	60, 300
PkrI	GCNGC	2 cut(s)	515, 1042
PleI	GAGTC	2 cut(s)	689, 941
PpsI	GAGTC	2 cut(s)	689, 941
PpuMI	RGGWCCY	3 cut(s)	310, 481, 619
PscI	ACATGT	1 cut(s)	244
Psp5II	RGGWCCY	3 cut(s)	310, 481, 619
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	3 cut(s)	482, 767, 1032
PspPI	GGNCC	4 cut(s)	310, 481, 619, 1030
PspPPI	RGGWCCY	3 cut(s)	310, 481, 619
PsuI	RGATCY	3 cut(s)	724, 765, 1075
RsaI	GTAC	1 cut(s)	777
RsaNI	GTAC	1 cut(s)	776
RseI	CAYNNNNRTG	1 cut(s)	341
SaqAI	TTAA	2 cut(s)	486, 747
SatI	GCNGC	2 cut(s)	514, 1041
Sau3AI	GATC	5 cut(s)	272, 707, 724, 765, 1075
Sau96I	GGNCC	4 cut(s)	310, 481, 619, 1030
SchI	GAGTC	2 cut(s)	690, 942
ScrFI	CCNGG	1 cut(s)	169
SfaNI	GCATC	2 cut(s)	292, 946
SfcI	CTRYAG	1 cut(s)	588
SinI	GGWCC	3 cut(s)	310, 481, 619
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	7 cut(s)	6, 154, 431, 634, 756, 786, 879
SseBI	AGGCCT	1 cut(s)	1051
SsiI	CCGC	4 cut(s)	250, 353, 678, 763
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	1 cut(s)	332
StuI	AGGCCT	1 cut(s)	1051
StyD4I	CCNGG	1 cut(s)	167
StyI	CCWWGG	2 cut(s)	810, 893
TaaI	ACNGT	2 cut(s)	386, 455
TaqI	TCGA	2 cut(s)	298, 918
TasI	AATT	7 cut(s)	6, 154, 431, 634, 756, 786, 879
TatI	WGTACW	1 cut(s)	775
TfiI	GAWTC	2 cut(s)	60, 300
Tru1I	TTAA	2 cut(s)	486, 747
Tru9I	TTAA	2 cut(s)	486, 747
TscAI	CASTG	2 cut(s)	391, 953
TseFI	GTSAC	2 cut(s)	558, 682
TseI	GCWGC	2 cut(s)	513, 1040
Tsp45I	GTSAC	2 cut(s)	558, 682
TspDTI	ATGAA	3 cut(s)	52, 88, 278
TspRI	CASTG	2 cut(s)	391, 953
Vha464I	CTTAAG	1 cut(s)	485
VpaK11BI	GGWCC	3 cut(s)	310, 481, 619
XagI	CCTNNNNNAGG	1 cut(s)	54
XapI	RAATTY	1 cut(s)	154
XceI	RCATGY	1 cut(s)	248
XmnI	GAANNNNTTC	2 cut(s)	987, 1018
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.