Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Reverse (-)

45557059 .. 45560468

Gene Structure 3410 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1373200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAGAGGTATGAGATTTTGAAGGATATTGGGTCTGGAAATTTTGGGGTGGCCAGGCTGGTCAGAGACAGGATCACCGGAGAACTCTATGCTGTTAAGTTCATTGAGAGAGGCAACAAGATAGGTGAACATGTGCAGAGGGAAATTATGAACCACAGAGCACTGAAGCATCCCAATATTGTTCTCTTCAAAGAGGTCCTGCTGACGCCATCTCATTTAGCCATAGTAATGGAGTATGCTGCCGGGGGAGAACTTTATTCGAGAATATGCAAGGCTGGAAAATTTAGTGAGGACGAGGCTAGGTATTTCTACCAACAATTGATATCAGGAGTTAGTTACTGTCATTCAATGCAAATCTGTCATAGAGACCTTAAGCTTGAAAATACACTCTTAGATGGCAGCACAGCACCCCGAGTAAAAATATGTGATTTTGGACACTCAAAGTCAGCATTGCATTCTCGGCCAAAATCTGCTGTAGGAACCCCAGCTTATATCGCACCTGAGGTCCTTTCGACAAAACAATATGATGGAAAGATTGCAGATGTTTGGTCTTCTGGAGTTGCCTTATATGTGATGTTAGTTGGAGCATACCCCTTCGAAGATCCTAAAGACCCTATAAACATCAAAAAAATTATTGGGCGAATCCTTACTGTACGCTACTCAATTCCAGATACTGTCCGAGTTTCCAAGGAATGTAAAGATCTCTTATCTAAAATATTCGTGGCAAACCCCGAAAAGCGAATAACAGTTCCGGAAATTAAAAGCCACCCGTGGTTCTTAAAGAACTTAGCTGTGGAAATGATGGAAGAAGGTAGCTGGCAGTGCTACGATGTAAATACTCCAGCCCAGAGCATAGACGAAGTTCTAACAATAATACAAGAGGCAAAAAAATCGTTAGAGGTCCTGAATGCTGCTGATAGGCCTCGTCCTCGAAGCAGTGGCAGCAGCAGGAGCAGGAGCATGAATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

324

Amino Acids

36.39

Weight (kDa)

8.96

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 259	1e-69	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 255	7.5e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	751
AclWI	GGATC	2 cut(s)	80, 596
AcoI	YGGCCR	2 cut(s)	51, 461
AcsI	RAATTY	2 cut(s)	40, 281
AcuI	CTGAAG	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	206
AfaI	GTAC	1 cut(s)	654
AflII	CTTAAG	1 cut(s)	371
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	4 cut(s)	22, 190, 348, 380
AjnI	CCWGG	1 cut(s)	53
AluBI	AGCT	4 cut(s)	376, 488, 791, 816
AluI	AGCT	4 cut(s)	376, 488, 791, 816
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	2 cut(s)	60, 360
AlwI	GGATC	2 cut(s)	80, 596
AlwNI	CAGNNNCTG	1 cut(s)	674
Ama87I	CYCGRG	1 cut(s)	411
Aor13HI	TCCGGA	1 cut(s)	751
AoxI	GGCC	3 cut(s)	51, 461, 920
ApeKI	GCWGC	5 cut(s)	239, 399, 911, 942, 945
ApoI	RAATTY	2 cut(s)	40, 281
AspS9I	GGNCC	3 cut(s)	196, 505, 901
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	67, 137
AsuII	TTCGAA	1 cut(s)	597
AvaI	CYCGRG	1 cut(s)	411
AvaII	GGWCC	3 cut(s)	196, 505, 901
AxyI	CCTNAGG	1 cut(s)	501
BalI	TGGCCA	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	543
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	5 cut(s)	226, 411, 898, 954, 957
BccI	CCATC	4 cut(s)	217, 389, 521, 796
BcgI	CGANNNNNNTGC	2 cut(s)	873, 907
BciT130I	CCWGG	1 cut(s)	55
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	2 cut(s)	60, 360
BfaI	CTAG	1 cut(s)	300
BfmI	CTRYAG	1 cut(s)	474
BfrI	CTTAAG	1 cut(s)	371
BglII	AGATCT	1 cut(s)	700
BisI	GCNGC	5 cut(s)	240, 400, 912, 943, 946
BlsI	GCNGC	5 cut(s)	241, 401, 913, 944, 947
Bme1390I	CCNGG	2 cut(s)	55, 244
Bme18I	GGWCC	3 cut(s)	196, 505, 901
BmeT110I	CYCGRG	1 cut(s)	411
BmgT120I	GGNCC	3 cut(s)	196, 505, 901
BmiI	GGNNCC	1 cut(s)	481
BmrFI	CCNGG	2 cut(s)	55, 244
BmsI	GCATC	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	543
BpmI	CTGGAG	2 cut(s)	576, 825
Bpu14I	TTCGAA	1 cut(s)	597
BpuMI	CCSGG	1 cut(s)	244
BsaHI	GRCGYC	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	3 cut(s)	243, 687, 770
BsaWI	WCCGGW	2 cut(s)	77, 751
Bse21I	CCTNAGG	1 cut(s)	501
Bse3DI	GCAATG	1 cut(s)	449
BseAI	TCCGGA	1 cut(s)	751
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	3 cut(s)	243, 687, 770
BseGI	GGATG	1 cut(s)	169
BseMI	GCAATG	1 cut(s)	449
BseMII	CTCAG	1 cut(s)	492
BseXI	GCAGC	5 cut(s)	226, 411, 898, 954, 957
BseYI	CCCAGC	1 cut(s)	484
BsgI	GTGCAG	1 cut(s)	155
BshFI	GGCC	3 cut(s)	53, 463, 922
BsiHKAI	GWGCWC	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	3 cut(s)	78, 243, 752
BsmAI	GTCTC	2 cut(s)	60, 360
BsmI	GAATGC	2 cut(s)	454, 913
BsnI	GGCC	3 cut(s)	53, 463, 922
Bso31I	GGTCTC	1 cut(s)	360
BsoBI	CYCGRG	1 cut(s)	411
Bsp119I	TTCGAA	1 cut(s)	597
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp13I	TCCGGA	1 cut(s)	751
Bsp143I	GATC	3 cut(s)	72, 601, 700
BspANI	GGCC	3 cut(s)	53, 463, 922
BspCNI	CTCAG	1 cut(s)	493
BspEI	TCCGGA	1 cut(s)	751
BspLI	GGNNCC	1 cut(s)	481
BspPI	GGATC	2 cut(s)	80, 596
BspT104I	TTCGAA	1 cut(s)	597
BspTI	CTTAAG	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	449
BssECI	CCNNGG	3 cut(s)	243, 687, 770
BssMI	GATC	3 cut(s)	72, 601, 700
BssNI	GRCGYC	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	687
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	4 cut(s)	341, 652, 676, 748
Bst6I	CTCTTC	1 cut(s)	191
BstACI	GRCGYC	1 cut(s)	206
BstAFI	CTTAAG	1 cut(s)	371
BstBI	TTCGAA	1 cut(s)	597
BstC8I	GCNNGC	1 cut(s)	818
BstDEI	CTNAG	3 cut(s)	391, 501, 787
BstDSI	CCRYGG	1 cut(s)	770
BstF5I	GGATG	1 cut(s)	169
BstKTI	GATC	3 cut(s)	75, 604, 703
BstMAI	GTCTC	2 cut(s)	60, 360
BstMBI	GATC	3 cut(s)	72, 601, 700
BstMWI	GCNNNNNNNGC	5 cut(s)	460, 494, 822, 942, 951
BstNI	CCWGG	1 cut(s)	55
BstNSI	RCATGY	1 cut(s)	134
BstSCI	CCNGG	2 cut(s)	53, 242
BstSFI	CTRYAG	1 cut(s)	474
BstV1I	GCAGC	5 cut(s)	226, 411, 898, 954, 957
BstV2I	GAAGAC	1 cut(s)	543
BstX2I	RGATCY	2 cut(s)	601, 700
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	2 cut(s)	601, 700
Bsu36I	CCTNAGG	1 cut(s)	501
BsuRI	GGCC	3 cut(s)	53, 463, 922
BtgI	CCRYGG	1 cut(s)	770
BtsCI	GGATG	1 cut(s)	169
BtsI	GCAGTG	2 cut(s)	827, 943
BtsIMutI	CAGTG	3 cut(s)	161, 827, 943
Cac8I	GCNNGC	1 cut(s)	818
CaiI	CAGNNNCTG	1 cut(s)	674
Cfr13I	GGNCC	3 cut(s)	196, 505, 901
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	653
CviAII	CATG	2 cut(s)	131, 961
CviQI	GTAC	1 cut(s)	653
DdeI	CTNAG	3 cut(s)	391, 501, 787
DpnI	GATC	3 cut(s)	74, 603, 702
DpnII	GATC	3 cut(s)	72, 601, 700
EaeI	YGGCCR	2 cut(s)	51, 461
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	687
Eco147I	AGGCCT	1 cut(s)	922
Eco31I	GGTCTC	1 cut(s)	360
Eco32I	GATATC	1 cut(s)	324
Eco47I	GGWCC	3 cut(s)	196, 505, 901
Eco57I	CTGAAG	1 cut(s)	185
Eco81I	CCTNAGG	1 cut(s)	501
Eco88I	CYCGRG	1 cut(s)	411
EcoO109I	RGGNCCY	3 cut(s)	196, 505, 901
EcoRII	CCWGG	1 cut(s)	53
EcoRV	GATATC	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	687
ErhI	CCWWGG	1 cut(s)	687
FaeI	CATG	2 cut(s)	134, 964
FatI	CATG	2 cut(s)	130, 960
Fnu4HI	GCNGC	5 cut(s)	240, 400, 912, 943, 946
FokI	GGATG	1 cut(s)	156
Fsp4HI	GCNGC	5 cut(s)	240, 400, 912, 943, 946
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	5 cut(s)	240, 400, 912, 943, 946
GsaI	CCCAGC	1 cut(s)	488
GsuI	CTGGAG	2 cut(s)	576, 825
HaeIII	GGCC	3 cut(s)	53, 463, 922
HapII	CCGG	3 cut(s)	78, 243, 752
HgaI	GACGC	1 cut(s)	214
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	2 cut(s)	134, 964
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	2 cut(s)	642, 964
HpaII	CCGG	3 cut(s)	78, 243, 752
HphI	GGTGA	2 cut(s)	67, 137
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	2 cut(s)	65, 680
Hpy188III	TCNNGA	7 cut(s)	36, 261, 327, 555, 668, 752, 904
Hpy8I	GTNNAC	1 cut(s)	128
HpyAV	CCTTC	3 cut(s)	16, 604, 803
HpyCH4III	ACNGT	4 cut(s)	341, 652, 676, 748
HpyCH4V	TGCA	5 cut(s)	136, 270, 352, 454, 539
HpyF10VI	GCNNNNNNNGC	5 cut(s)	460, 494, 822, 942, 951
HpyF3I	CTNAG	3 cut(s)	391, 501, 787
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	2 cut(s)	134, 964
Kpn2I	TCCGGA	1 cut(s)	751
Kzo9I	GATC	3 cut(s)	72, 601, 700
LmnI	GCTCC	3 cut(s)	584, 951, 957
Lsp1109I	GCAGC	5 cut(s)	226, 411, 898, 954, 957
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	3 cut(s)	74, 603, 702
MboI	GATC	3 cut(s)	72, 601, 700
MboII	GAAGA	4 cut(s)	178, 543, 611, 818
MfeI	CAATTG	1 cut(s)	317
MflI	RGATCY	2 cut(s)	601, 700
MhlI	GDGCHC	1 cut(s)	163
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	7 cut(s)	40, 144, 281, 317, 630, 663, 756
MluNI	TGGCCA	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	562
Mox20I	TGGCCA	1 cut(s)	53
MroI	TCCGGA	1 cut(s)	751
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	4 cut(s)	96, 372, 759, 779
MslI	CAYNNNNRTG	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	53
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	3 cut(s)	78, 243, 752
MspR9I	CCNGG	2 cut(s)	55, 244
MunI	CAATTG	1 cut(s)	317
Mva1269I	GAATGC	2 cut(s)	454, 913
MvaI	CCWGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	5 cut(s)	460, 494, 822, 942, 951
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	3 cut(s)	72, 601, 700
NlaIII	CATG	2 cut(s)	134, 964
NlaIV	GGNNCC	1 cut(s)	481
NmeAIII	GCCGAG	1 cut(s)	439
NspI	RCATGY	1 cut(s)	134
NspV	TTCGAA	1 cut(s)	597
PceI	AGGCCT	1 cut(s)	922
PciI	ACATGT	1 cut(s)	130
PctI	GAATGC	2 cut(s)	454, 913
PfeI	GAWTC	2 cut(s)	642, 964
PkrI	GCNGC	5 cut(s)	241, 401, 913, 944, 947
PpuMI	RGGWCCY	3 cut(s)	196, 505, 901
PscI	ACATGT	1 cut(s)	130
Psp5II	RGGWCCY	3 cut(s)	196, 505, 901
Psp6I	CCWGG	1 cut(s)	53
PspFI	CCCAGC	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	481
PspPI	GGNCC	3 cut(s)	196, 505, 901
PspPPI	RGGWCCY	3 cut(s)	196, 505, 901
PstNI	CAGNNNCTG	1 cut(s)	674
PsuI	RGATCY	2 cut(s)	601, 700
RsaI	GTAC	1 cut(s)	654
RsaNI	GTAC	1 cut(s)	653
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	4 cut(s)	96, 372, 759, 779
SatI	GCNGC	5 cut(s)	240, 400, 912, 943, 946
Sau3AI	GATC	3 cut(s)	72, 601, 700
Sau96I	GGNCC	3 cut(s)	196, 505, 901
ScrFI	CCNGG	2 cut(s)	55, 244
SduI	GDGCHC	1 cut(s)	163
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	474
SfuI	TTCGAA	1 cut(s)	597
SinI	GGWCC	3 cut(s)	196, 505, 901
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	7 cut(s)	40, 144, 281, 317, 630, 663, 756
SseBI	AGGCCT	1 cut(s)	922
SspI	AATATT	2 cut(s)	178, 717
SspMI	CTAG	1 cut(s)	300
StuI	AGGCCT	1 cut(s)	922
StyD4I	CCNGG	2 cut(s)	53, 242
StyI	CCWWGG	1 cut(s)	687
TaaI	ACNGT	4 cut(s)	341, 652, 676, 748
TaqI	TCGA	4 cut(s)	260, 512, 597, 931
TasI	AATT	7 cut(s)	40, 144, 281, 317, 630, 663, 756
TfiI	GAWTC	2 cut(s)	642, 964
Tru1I	TTAA	4 cut(s)	96, 372, 759, 779
Tru9I	TTAA	4 cut(s)	96, 372, 759, 779
TscAI	CASTG	3 cut(s)	168, 827, 943
TseI	GCWGC	5 cut(s)	239, 399, 911, 942, 945
TspDTI	ATGAA	2 cut(s)	91, 164
TspRI	CASTG	3 cut(s)	168, 827, 943
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	3 cut(s)	196, 505, 901
XapI	RAATTY	2 cut(s)	40, 281
XceI	RCATGY	1 cut(s)	134
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.