RLG00000000879
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
7294037 .. 7295974
1938 bp
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UTR
Exon/CDS
Intron
RLM00000000879

Sequence Viewer

Length: 783 bp
ATGGAGAGGTATGAGATTTTGCAGGATATTGGAGCTGGCAATTTTGCGGTGACAAAGTTGGTCAGAGAAAAGTGTAGCGGAAAACTCTATTGTATTAAGTTGATTGAGAGAGGCAGCAAGTTTGCAATAGTTCCTAATCATATATGTCATAGAGATCTTAAGCTTGAAAATTCACTCTTAGATGGCGGCACAACCCCTCGTGTGAAAATATGCGATTTCGGATACTCAAAGTCACTACTTCAATCTCAGCCAAAATCTGTTGTGGGAACACCAAATTATATTGCACCTGAAGTCCTATCTAGAAAAAAATATGATGGAAAGATTTCAGATGTCTGGTCTTGTGGAGTCACCTTATTTGTCATGATCTTCGGGGCATATCCCTTTGAAGATCCTCAGGACCCTTTAAACTTTACAAAAACAATCCGGCGAATTCTTAGTGTACACTACTCAATCCCACAAAATATCGGAGTTTCCGGGGAATGTAGGCATCTGTTTTCTAAAATATTTGTGGCAAACCCAGAACAGAGAATAACAATCCCTGAAATTAAGAGACATCCTTGGTTTGTAAAGAACTTACCTATGGAAATGATGGAAGGAGGAAGTTGGGAAAGCAATGAGGTGAACAATCCATCCCAAAGTGTTGAGGAAGTTCAGTCTATAATACAAGAGGCAAGAAGACCTTTAAAGGCCCGAACTGTCAGTAGGCATCTCACTGGAAGTAGCATGGCTCTTGATGAAGCTGATGTTGGAGGTCCAGAAACAAATGGTGATTTTACGTGCTAA

Protein Analysis

261

Amino Acids

29.21

Weight (kDa)

8.12

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 46 - 188 8.2e-37 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 46 - 184 6.8e-15 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000609)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 47, 78, 186
AclWI GGATC 1 cut(s) 383
AcsI RAATTY 2 cut(s) 169, 429
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 1 cut(s) 441
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 3 cut(s) 167, 242, 386
AjuI GAANNNNNNNTTGG 2 cut(s) 729, 761
AloI GAACNNNNNNTCC 2 cut(s) 614, 646
AluBI AGCT 3 cut(s) 35, 163, 740
AluI AGCT 3 cut(s) 35, 163, 740
Alw26I GTCTC 1 cut(s) 544
AlwI GGATC 1 cut(s) 383
AoxI GGCC 1 cut(s) 687
ApeKI GCWGC 1 cut(s) 114
ApoI RAATTY 2 cut(s) 169, 429
Asp700I GAANNNNTTC 1 cut(s) 322
AspS9I GGNCC 3 cut(s) 397, 688, 752
AsuC2I CCSGG 1 cut(s) 475
AsuHPI GGTGA 4 cut(s) 61, 340, 631, 779
AvaII GGWCC 2 cut(s) 397, 752
AxyI CCTNAGG 1 cut(s) 393
BauI CACGAG 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 682
BbvI GCAGC 1 cut(s) 126
BccI CCATC 4 cut(s) 176, 308, 583, 637
BciVI GTATCC 1 cut(s) 215
BcnI CCSGG 1 cut(s) 475
BcoDI GTCTC 1 cut(s) 544
BfaI CTAG 1 cut(s) 300
BfrI CTTAAG 1 cut(s) 158
BfuI GTATCC 1 cut(s) 215
BglII AGATCT 1 cut(s) 154
BisI GCNGC 2 cut(s) 115, 187
BlsI GCNGC 2 cut(s) 116, 188
Bme1390I CCNGG 1 cut(s) 475
Bme18I GGWCC 2 cut(s) 397, 752
BmgT120I GGNCC 3 cut(s) 397, 688, 752
BmiI GGNNCC 1 cut(s) 399
BmrFI CCNGG 1 cut(s) 475
BmsI GCATC 2 cut(s) 496, 715
BpiI GAAGAC 1 cut(s) 682
BpuMI CCSGG 1 cut(s) 475
BsaAI YACGTR 1 cut(s) 777
BsaJI CCNNGG 2 cut(s) 474, 557
Bse1I ACTGG 1 cut(s) 718
Bse21I CCTNAGG 1 cut(s) 393
Bse3DI GCAATG 1 cut(s) 619
BseDI CCNNGG 2 cut(s) 474, 557
BseGI GGATG 2 cut(s) 553, 629
BseMI GCAATG 1 cut(s) 619
BseMII CTCAG 2 cut(s) 260, 407
BseNI ACTGG 1 cut(s) 718
BseXI GCAGC 1 cut(s) 126
BshFI GGCC 1 cut(s) 689
BsiSI CCGG 2 cut(s) 424, 474
BsmAI GTCTC 1 cut(s) 544
BsnI GGCC 1 cut(s) 689
Bsp1407I TGTACA 1 cut(s) 439
Bsp143I GATC 3 cut(s) 154, 363, 388
BspACI CCGC 3 cut(s) 47, 78, 186
BspANI GGCC 1 cut(s) 689
BspCNI CTCAG 2 cut(s) 259, 406
BspHI TCATGA 1 cut(s) 360
BspLI GGNNCC 1 cut(s) 399
BspPI GGATC 1 cut(s) 383
BspTI CTTAAG 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 619
BsrGI TGTACA 1 cut(s) 439
BsrI ACTGG 1 cut(s) 718
BssECI CCNNGG 2 cut(s) 474, 557
BssMI GATC 3 cut(s) 154, 363, 388
BssSI CACGAG 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 557
Bst2BI CACGAG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 697
BstAFI CTTAAG 1 cut(s) 158
BstAUI TGTACA 1 cut(s) 439
BstBAI YACGTR 1 cut(s) 777
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 4 cut(s) 178, 246, 393, 434
BstF5I GGATG 2 cut(s) 553, 629
BstKTI GATC 3 cut(s) 157, 366, 391
BstMAI GTCTC 1 cut(s) 544
BstMBI GATC 3 cut(s) 154, 363, 388
BstSCI CCNGG 1 cut(s) 473
BstV1I GCAGC 1 cut(s) 126
BstV2I GAAGAC 1 cut(s) 682
BstX2I RGATCY 2 cut(s) 154, 388
BstYI RGATCY 2 cut(s) 154, 388
Bsu36I CCTNAGG 1 cut(s) 393
BsuI GTATCC 1 cut(s) 215
BsuRI GGCC 1 cut(s) 689
BtsCI GGATG 2 cut(s) 553, 629
BtsIMutI CAGTG 1 cut(s) 711
Cac8I GCNNGC 1 cut(s) 37
CciI TCATGA 1 cut(s) 360
Cfr13I GGNCC 3 cut(s) 397, 688, 752
Csp6I GTAC 1 cut(s) 440
CviAII CATG 2 cut(s) 361, 724
CviJI RGCY 6 cut(s) 35, 163, 250, 689, 728, 740
CviKI_1 RGCY 6 cut(s) 35, 163, 250, 689, 728, 740
CviQI GTAC 1 cut(s) 440
DdeI CTNAG 4 cut(s) 178, 246, 393, 434
DpnI GATC 3 cut(s) 156, 365, 390
DpnII GATC 3 cut(s) 154, 363, 388
DraI TTTAAA 2 cut(s) 405, 684
Eco130I CCWWGG 1 cut(s) 557
Eco47I GGWCC 2 cut(s) 397, 752
Eco57I CTGAAG 1 cut(s) 309
Eco81I CCTNAGG 1 cut(s) 393
EcoO109I RGGNCCY 1 cut(s) 397
EcoRI GAATTC 1 cut(s) 429
EcoT14I CCWWGG 1 cut(s) 557
ErhI CCWWGG 1 cut(s) 557
FaeI CATG 2 cut(s) 364, 727
FalI AAGNNNNNCTT 2 cut(s) 664, 696
FatI CATG 2 cut(s) 360, 723
Fnu4HI GCNGC 2 cut(s) 115, 187
FokI GGATG 2 cut(s) 540, 616
Fsp4HI GCNGC 2 cut(s) 115, 187
FspBI CTAG 1 cut(s) 300
GluI GCNGC 2 cut(s) 115, 187
HaeIII GGCC 1 cut(s) 689
HapII CCGG 2 cut(s) 424, 474
Hin1II CATG 2 cut(s) 364, 727
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 1 cut(s) 345
HpaII CCGG 2 cut(s) 424, 474
HphI GGTGA 4 cut(s) 61, 340, 631, 779
Hpy166II GTNNAC 3 cut(s) 440, 442, 622
Hpy188I TCNGA 4 cut(s) 65, 221, 328, 467
Hpy188III TCNNGA 5 cut(s) 300, 361, 395, 731, 755
Hpy8I GTNNAC 3 cut(s) 440, 442, 622
HpyAV CCTTC 1 cut(s) 587
HpyCH4III ACNGT 1 cut(s) 697
HpyCH4IV ACGT 1 cut(s) 776
HpyCH4V TGCA 3 cut(s) 22, 125, 284
HpyF3I CTNAG 4 cut(s) 178, 246, 393, 434
HpySE526I ACGT 1 cut(s) 776
Hsp92II CATG 2 cut(s) 364, 727
Kzo9I GATC 3 cut(s) 154, 363, 388
LmnI GCTCC 1 cut(s) 32
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 2 cut(s) 496, 715
MaeI CTAG 1 cut(s) 300
MaeII ACGT 1 cut(s) 776
MaeIII GTNAC 3 cut(s) 49, 231, 346
MalI GATC 3 cut(s) 156, 365, 390
MboI GATC 3 cut(s) 154, 363, 388
MboII GAAGA 3 cut(s) 358, 398, 687
MflI RGATCY 2 cut(s) 154, 388
MluCI AATT 5 cut(s) 40, 169, 274, 429, 543
MlyI GAGTC 1 cut(s) 354
MmeI TCCRAC 1 cut(s) 727
MnlI CCTC 8 cut(s) 104, 207, 402, 590, 610, 637, 661, 743
MroXI GAANNNNTTC 1 cut(s) 322
MseI TTAA 5 cut(s) 96, 159, 404, 546, 683
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 2 cut(s) 424, 474
MspR9I CCNGG 1 cut(s) 475
NciI CCSGG 1 cut(s) 475
NdeII GATC 3 cut(s) 154, 363, 388
NlaIII CATG 2 cut(s) 364, 727
NlaIV GGNNCC 1 cut(s) 399
NmuCI GTSAC 3 cut(s) 49, 231, 346
PagI TCATGA 1 cut(s) 360
PdmI GAANNNNTTC 1 cut(s) 322
PkrI GCNGC 2 cut(s) 116, 188
PleI GAGTC 1 cut(s) 353
PpsI GAGTC 1 cut(s) 353
Ppu21I YACGTR 1 cut(s) 777
PpuMI RGGWCCY 1 cut(s) 397
Psp5II RGGWCCY 1 cut(s) 397
PspN4I GGNNCC 1 cut(s) 399
PspPI GGNCC 3 cut(s) 397, 688, 752
PspPPI RGGWCCY 1 cut(s) 397
PsuI RGATCY 2 cut(s) 154, 388
RsaI GTAC 1 cut(s) 441
RsaNI GTAC 1 cut(s) 440
SaqAI TTAA 5 cut(s) 96, 159, 404, 546, 683
SatI GCNGC 2 cut(s) 115, 187
Sau3AI GATC 3 cut(s) 154, 363, 388
Sau96I GGNCC 3 cut(s) 397, 688, 752
SchI GAGTC 1 cut(s) 354
ScrFI CCNGG 1 cut(s) 475
SfaNI GCATC 2 cut(s) 496, 715
SinI GGWCC 2 cut(s) 397, 752
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 5 cut(s) 40, 169, 274, 429, 543
SsiI CCGC 3 cut(s) 47, 78, 186
SspI AATATT 1 cut(s) 504
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 1 cut(s) 473
StyI CCWWGG 1 cut(s) 557
TaaI ACNGT 1 cut(s) 697
TaiI ACGT 1 cut(s) 779
TasI AATT 5 cut(s) 40, 169, 274, 429, 543
TatI WGTACW 1 cut(s) 439
TauI GCSGC 1 cut(s) 189
Tru1I TTAA 5 cut(s) 96, 159, 404, 546, 683
Tru9I TTAA 5 cut(s) 96, 159, 404, 546, 683
TscAI CASTG 1 cut(s) 718
TseFI GTSAC 3 cut(s) 49, 231, 346
TseI GCWGC 1 cut(s) 114
Tsp45I GTSAC 3 cut(s) 49, 231, 346
TspDTI ATGAA 1 cut(s) 750
TspRI CASTG 1 cut(s) 718
Vha464I CTTAAG 1 cut(s) 158
VpaK11BI GGWCC 2 cut(s) 397, 752
XapI RAATTY 2 cut(s) 169, 429
XbaI TCTAGA 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 322
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.