Rmu_sc0004165.1_g000026
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004165.1
Physical Location & Seq
Forward (+)
85374 .. 89217
3844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004165.1_g000026.1.cds

Sequence Viewer

Length: 858 bp
atggagaggtatgagattgtgaaaaatattgggtctgggacttctggggtagcaaggttggtaagagataaatgtaccggagaacactttgccgttaagttcatcgagagaggcaacaagatcaatgaaaatgtacaagaagaaatcatgaaccacagacccttgaagcatcccaatattgttcaattcaaagaggtcctcctgacatcaactcatctatgcattgtgatggagtatgctgctggaggagaactctatgagagaatatgcaaagccgatgacagcacagcacctcgggtgaaaatatgcgattttggatcctcagagtcactactactacattcttggcaaaaatctactgcgggaacaccggcttatattgcacctgaggtcctatctgaaaaacaatatgatggagcgattgcagatgtttggtcttgtggagtctccctatatgtcatgattgttggagcatatccctttgaagatcgtaaggaccctatgaactttagaaaaacaattctgcggacccttactgtatgctactcaatccctgataatgtacgagtttctgtggaatgtagagacttgctcgctaagatatttgtggcaaacccagaaaagagaattacaatttcagaaattaagaaccactgttggttcttgaagaatttacctatggagatgtggggaggaggaagttgggaaagcaatgacgtaaaccatccatcccaaagcattgaagaagtccagtctataattaaagaggcaagaaaacctttaaaggtcccaactgccagtaggcatctcactggaagcagcatggctattgatgatgctgaattaaacaagtggtga

Protein Analysis

285

Amino Acids

32.16

Weight (kDa)

6.46

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000609)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 362, 526
AclWI GGATC 2 cut(s) 312, 325
AcsI RAATTY 1 cut(s) 670
AfaI GTAC 3 cut(s) 76, 135, 564
AgsI TTSAA 6 cut(s) 166, 185, 190, 485, 667, 743
Alw26I GTCTC 2 cut(s) 451, 579
AlwI GGATC 2 cut(s) 312, 325
Ama87I CYCGRG 1 cut(s) 294
ApeKI GCWGC 2 cut(s) 239, 819
ApoI RAATTY 1 cut(s) 670
AspS9I GGNCC 5 cut(s) 196, 391, 496, 528, 787
AsuHPI GGTGA 1 cut(s) 310
AvaI CYCGRG 1 cut(s) 294
AvaII GGWCC 5 cut(s) 196, 391, 496, 528, 787
AxyI CCTNAGG 1 cut(s) 387
BamHI GGATCC 1 cut(s) 317
BbvI GCAGC 2 cut(s) 226, 831
BccI CCATC 4 cut(s) 223, 407, 732, 736
BceAI ACGGC 1 cut(s) 77
BcoDI GTCTC 2 cut(s) 451, 579
BisI GCNGC 2 cut(s) 240, 820
BlsI GCNGC 2 cut(s) 241, 821
Bme18I GGWCC 5 cut(s) 196, 391, 496, 528, 787
BmeT110I CYCGRG 1 cut(s) 294
BmgT120I GGNCC 5 cut(s) 196, 391, 496, 528, 787
BmiI GGNNCC 4 cut(s) 319, 498, 530, 789
BmsI GCATC 3 cut(s) 178, 814, 826
BplI GAGNNNNNCTC 4 cut(s) 237, 269, 576, 608
BpmI CTGGAG 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 293
BsaWI WCCGGW 1 cut(s) 77
Bse118I RCCGGY 1 cut(s) 370
Bse1I ACTGG 3 cut(s) 751, 798, 817
Bse21I CCTNAGG 1 cut(s) 387
Bse3DI GCAATG 1 cut(s) 718
BseDI CCNNGG 1 cut(s) 293
BseGI GGATG 3 cut(s) 169, 724, 728
BseMI GCAATG 1 cut(s) 718
BseMII CTCAG 2 cut(s) 336, 378
BseNI ACTGG 3 cut(s) 751, 798, 817
BseRI GAGGAG 2 cut(s) 261, 708
BseXI GCAGC 2 cut(s) 226, 831
BsiHKCI CYCGRG 1 cut(s) 294
BsiSI CCGG 2 cut(s) 78, 371
BslFI GGGAC 2 cut(s) 52, 773
BsmAI GTCTC 2 cut(s) 451, 579
BsmFI GGGAC 2 cut(s) 52, 773
BsoBI CYCGRG 1 cut(s) 294
Bsp1407I TGTACA 1 cut(s) 133
Bsp143I GATC 3 cut(s) 120, 317, 487
BspACI CCGC 2 cut(s) 362, 526
BspCNI CTCAG 2 cut(s) 335, 379
BspHI TCATGA 2 cut(s) 147, 459
BspLI GGNNCC 4 cut(s) 319, 498, 530, 789
BspPI GGATC 2 cut(s) 312, 325
BsrDI GCAATG 1 cut(s) 718
BsrFI RCCGGY 1 cut(s) 370
BsrGI TGTACA 1 cut(s) 133
BsrI ACTGG 3 cut(s) 751, 798, 817
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 3 cut(s) 120, 317, 487
Bst4CI ACNGT 2 cut(s) 538, 656
BstAUI TGTACA 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 594
BstDEI CTNAG 3 cut(s) 322, 387, 597
BstF5I GGATG 3 cut(s) 169, 724, 728
BstKTI GATC 3 cut(s) 123, 320, 490
BstMAI GTCTC 2 cut(s) 451, 579
BstMBI GATC 3 cut(s) 120, 317, 487
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstV1I GCAGC 2 cut(s) 226, 831
BstX2I RGATCY 1 cut(s) 317
BstYI RGATCY 1 cut(s) 317
Bsu36I CCTNAGG 1 cut(s) 387
BtsCI GGATG 3 cut(s) 169, 724, 728
BtsIMutI CAGTG 2 cut(s) 652, 810
Cac8I GCNNGC 1 cut(s) 594
CciI TCATGA 2 cut(s) 147, 459
Cfr10I RCCGGY 1 cut(s) 370
Cfr13I GGNCC 5 cut(s) 196, 391, 496, 528, 787
Csp6I GTAC 3 cut(s) 75, 134, 563
CviAII CATG 3 cut(s) 148, 460, 823
CviJI RGCY 3 cut(s) 275, 374, 827
CviKI_1 RGCY 3 cut(s) 275, 374, 827
CviQI GTAC 3 cut(s) 75, 134, 563
DdeI CTNAG 3 cut(s) 322, 387, 597
DpnI GATC 3 cut(s) 122, 319, 489
DpnII GATC 3 cut(s) 120, 317, 487
DraI TTTAAA 1 cut(s) 783
Eco47I GGWCC 5 cut(s) 196, 391, 496, 528, 787
Eco81I CCTNAGG 1 cut(s) 387
Eco88I CYCGRG 1 cut(s) 294
EcoO109I RGGNCCY 4 cut(s) 196, 391, 496, 787
EcoT22I ATGCAT 1 cut(s) 224
FaeI CATG 3 cut(s) 151, 463, 826
FalI AAGNNNNNCTT 2 cut(s) 763, 795
FaqI GGGAC 2 cut(s) 52, 773
FatI CATG 3 cut(s) 147, 459, 822
FauI CCCGC 1 cut(s) 355
Fnu4HI GCNGC 2 cut(s) 240, 820
FokI GGATG 3 cut(s) 156, 711, 715
Fsp4HI GCNGC 2 cut(s) 240, 820
GluI GCNGC 2 cut(s) 240, 820
GsuI CTGGAG 1 cut(s) 264
HapII CCGG 2 cut(s) 78, 371
Hin1II CATG 3 cut(s) 151, 463, 826
HinfI GANTC 2 cut(s) 326, 444
HpaII CCGG 2 cut(s) 78, 371
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 1 cut(s) 721
Hpy188I TCNGA 3 cut(s) 325, 400, 640
Hpy188III TCNNGA 5 cut(s) 106, 148, 202, 460, 664
Hpy8I GTNNAC 1 cut(s) 721
HpyCH4III ACNGT 2 cut(s) 538, 656
HpyCH4IV ACGT 1 cut(s) 717
HpyCH4V TGCA 4 cut(s) 222, 270, 383, 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpyF3I CTNAG 3 cut(s) 322, 387, 597
HpySE526I ACGT 1 cut(s) 717
Hsp92II CATG 3 cut(s) 151, 463, 826
Kzo9I GATC 3 cut(s) 120, 317, 487
LmnI GCTCC 2 cut(s) 416, 470
Lsp1109I GCAGC 2 cut(s) 226, 831
LweI GCATC 3 cut(s) 178, 814, 826
MaeII ACGT 1 cut(s) 717
MaeIII GTNAC 1 cut(s) 327
MalI GATC 3 cut(s) 122, 319, 489
MboI GATC 3 cut(s) 120, 317, 487
MboII GAAGA 4 cut(s) 152, 497, 679, 755
MflI RGATCY 1 cut(s) 317
MluCI AATT 8 cut(s) 185, 519, 627, 633, 642, 670, 759, 842
MlyI GAGTC 2 cut(s) 335, 453
MmeI TCCRAC 1 cut(s) 448
Mph1103I ATGCAT 1 cut(s) 224
MseI TTAA 5 cut(s) 96, 645, 762, 782, 845
MslI CAYNNNNRTG 1 cut(s) 227
MspI CCGG 2 cut(s) 78, 371
MwoI GCNNNNNNNGC 1 cut(s) 380
NdeII GATC 3 cut(s) 120, 317, 487
NlaIII CATG 3 cut(s) 151, 463, 826
NlaIV GGNNCC 4 cut(s) 319, 498, 530, 789
NmuCI GTSAC 1 cut(s) 327
NsiI ATGCAT 1 cut(s) 224
PagI TCATGA 2 cut(s) 147, 459
PkrI GCNGC 2 cut(s) 241, 821
PleI GAGTC 2 cut(s) 334, 452
PpsI GAGTC 2 cut(s) 334, 452
PpuMI RGGWCCY 4 cut(s) 196, 391, 496, 787
Psp5II RGGWCCY 4 cut(s) 196, 391, 496, 787
PspN4I GGNNCC 4 cut(s) 319, 498, 530, 789
PspPI GGNCC 5 cut(s) 196, 391, 496, 528, 787
PspPPI RGGWCCY 4 cut(s) 196, 391, 496, 787
PsuI RGATCY 1 cut(s) 317
RsaI GTAC 3 cut(s) 76, 135, 564
RsaNI GTAC 3 cut(s) 75, 134, 563
RseI CAYNNNNRTG 1 cut(s) 227
SaqAI TTAA 5 cut(s) 96, 645, 762, 782, 845
SatI GCNGC 2 cut(s) 240, 820
Sau3AI GATC 3 cut(s) 120, 317, 487
Sau96I GGNCC 5 cut(s) 196, 391, 496, 528, 787
SchI GAGTC 2 cut(s) 335, 453
SfaNI GCATC 3 cut(s) 178, 814, 826
SinI GGWCC 5 cut(s) 196, 391, 496, 528, 787
SmiMI CAYNNNNRTG 1 cut(s) 227
Sse9I AATT 8 cut(s) 185, 519, 627, 633, 642, 670, 759, 842
SsiI CCGC 2 cut(s) 362, 526
SspI AATATT 2 cut(s) 28, 178
TaaI ACNGT 2 cut(s) 538, 656
TaiI ACGT 1 cut(s) 720
TaqI TCGA 1 cut(s) 105
TasI AATT 8 cut(s) 185, 519, 627, 633, 642, 670, 759, 842
TatI WGTACW 1 cut(s) 133
Tru1I TTAA 5 cut(s) 96, 645, 762, 782, 845
Tru9I TTAA 5 cut(s) 96, 645, 762, 782, 845
TscAI CASTG 2 cut(s) 659, 817
TseFI GTSAC 1 cut(s) 327
TseI GCWGC 2 cut(s) 239, 819
Tsp45I GTSAC 1 cut(s) 327
TspDTI ATGAA 4 cut(s) 91, 141, 164, 518
TspRI CASTG 2 cut(s) 659, 817
VpaK11BI GGWCC 5 cut(s) 196, 391, 496, 528, 787
XapI RAATTY 1 cut(s) 670
Zsp2I ATGCAT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.