Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Reverse (-)

42774220 .. 42776743

Gene Structure 2524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G521600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGAGAGGTATGAGATTATGAAAGATATTGGGTTTGGGAATTTTGGGGTGGCCAGGCTGGTCAGAGATAAGTTGACCAGAGAGCTCTTTGCTGTTAAGTTCATTGAGAGAGGCCACAAGATAGATGAACATGTGCAAAGGGAAATCATGAACCACAGATCATTGAAGCATCCCAATATTGTTCGATTCAAAGAGGTCCTTTTGACACCAACTCATCTAGCCATAGTAATGGAGTATGCGGCAGGGGGAGAGCTCTTTGGGAGAATATGCAATGCTGGCAGATTTAGTGAGGATGAGGCAAGGTTTTTCTTCCAGCAGTTGATATCAGGAGTTAGTTATTGTCATTCAATGCAAATCTGTCATAGAGACCTTAAGCTTGAAAACACACTCTTAGATGGCAGCACAGCACCCCGTGTAAAAATATGTGATTTCGGATACTCAAAGTCAGTATTGCATTCTCAGCCAAAATCTACTGTAGGAACACCAGCTTATATAGCACCAGAGGTCCTATCTAAAAGCAAATATGATGGACAGATTGCAGACGTTTGGTCTTGTGGAGTGACCTTATATGTGATGATAGTTGGAGCATATCCCTTTGAAGATCCTCAAGACCCTCGAAACTTTAGAAAAACAATTGGGCGGATACTTAGCGTACAGTACTCAATTCCAGATAATGTCCGAGTTTCCATCGAATGTAGACATCTCTTATCTCATATATTTGTAGCAGACCCCAAAAAGAGAATAACAATCCCAGAAATTAAAAGCCACCCTTGGTTTCTAAAGAACTTACCTATGGAAATGATGGAAGGAGGAAGCTGGCAGACCCATGATGTTAATAATCCATCCCAAAGCATTGAAGAAGTCCAGTCCATAATACAGGAGGCAAGAAAACCAGTCGGGGTACCAAATGCAGCTCGTAAGCCTCTCATCGGAAGCAGCAGCATGGAACTTGATGATTTGGATGCTGAAGATATTGGAACAAGTGGTGATTTTGTATTGCCAAATATGAGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

339

Amino Acids

38.24

Weight (kDa)

6.64

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	901
AccB1I	GGYRCC	1 cut(s)	901
AccI	GTMKAC	1 cut(s)	697
AciI	CCGC	2 cut(s)	239, 640
AclWI	GGATC	1 cut(s)	596
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	987
AdeI	CACNNNGTG	1 cut(s)	413
AfaI	GTAC	3 cut(s)	654, 659, 903
AfiI	CCNNNNNNNGG	1 cut(s)	929
AflII	CTTAAG	1 cut(s)	371
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	6 cut(s)	166, 190, 348, 380, 599, 857
AhdI	GACNNNNNGTC	1 cut(s)	547
AjnI	CCWGG	1 cut(s)	53
AluBI	AGCT	6 cut(s)	85, 253, 376, 488, 816, 914
AluI	AGCT	6 cut(s)	85, 253, 376, 488, 816, 914
Alw21I	GWGCWC	2 cut(s)	87, 255
Alw26I	GTCTC	1 cut(s)	360
AlwI	GGATC	1 cut(s)	596
AoxI	GGCC	2 cut(s)	51, 112
ApeKI	GCWGC	4 cut(s)	399, 911, 936, 939
ApoI	RAATTY	1 cut(s)	40
Asp718I	GGTACC	1 cut(s)	901
AspS9I	GGNCC	2 cut(s)	196, 505
AsuHPI	GGTGA	1 cut(s)	998
AvaII	GGWCC	2 cut(s)	196, 505
BalI	TGGCCA	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	901
BanII	GRGCYC	2 cut(s)	87, 255
Bbv12I	GWGCWC	2 cut(s)	87, 255
BbvI	GCAGC	4 cut(s)	411, 923, 948, 951
BccI	CCATC	5 cut(s)	389, 521, 695, 796, 850
BciT130I	CCWGG	1 cut(s)	55
BciVI	GTATCC	2 cut(s)	428, 636
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	1 cut(s)	218
BfmI	CTRYAG	1 cut(s)	474
BfrI	CTTAAG	1 cut(s)	371
BfuI	GTATCC	2 cut(s)	428, 636
BisI	GCNGC	5 cut(s)	240, 400, 912, 937, 940
BlsI	GCNGC	5 cut(s)	241, 401, 913, 938, 941
BmcAI	AGTACT	1 cut(s)	659
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	2 cut(s)	196, 505
BmeRI	GACNNNNNGTC	1 cut(s)	547
BmgT120I	GGNCC	2 cut(s)	196, 505
BmiI	GGNNCC	1 cut(s)	903
BmrFI	CCNGG	1 cut(s)	55
BmsI	GCATC	2 cut(s)	178, 952
BpuEI	CTTGAG	1 cut(s)	591
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	770
Bsc4I	CCNNNNNNNGG	1 cut(s)	929
Bse1I	ACTGG	2 cut(s)	865, 893
Bse3DI	GCAATG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	770
BseGI	GGATG	4 cut(s)	169, 298, 842, 967
BseLI	CCNNNNNNNGG	1 cut(s)	929
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	473
BseNI	ACTGG	2 cut(s)	865, 893
BseXI	GCAGC	4 cut(s)	411, 923, 948, 951
BshFI	GGCC	2 cut(s)	53, 114
BshNI	GGYRCC	1 cut(s)	901
BsiHKAI	GWGCWC	2 cut(s)	87, 255
BslI	CCNNNNNNNGG	1 cut(s)	929
BsmAI	GTCTC	1 cut(s)	360
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	2 cut(s)	53, 114
Bso31I	GGTCTC	1 cut(s)	360
Bsp1286I	GDGCHC	2 cut(s)	87, 255
Bsp143I	GATC	2 cut(s)	158, 601
BspACI	CCGC	2 cut(s)	239, 640
BspANI	GGCC	2 cut(s)	53, 114
BspCNI	CTCAG	1 cut(s)	472
BspHI	TCATGA	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	903
BspPI	GGATC	1 cut(s)	596
BspT107I	GGYRCC	1 cut(s)	901
BspTI	CTTAAG	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	277
BsrI	ACTGG	2 cut(s)	865, 893
BssECI	CCNNGG	1 cut(s)	770
BssMI	GATC	2 cut(s)	158, 601
BssT1I	CCWWGG	1 cut(s)	770
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	2 cut(s)	475, 657
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	2 cut(s)	277, 818
BstDEI	CTNAG	3 cut(s)	391, 459, 647
BstF5I	GGATG	4 cut(s)	169, 298, 842, 967
BstKTI	GATC	2 cut(s)	161, 604
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	2 cut(s)	158, 601
BstMWI	GCNNNNNNNGC	3 cut(s)	276, 460, 494
BstNI	CCWGG	1 cut(s)	55
BstNSI	RCATGY	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	474
BstV1I	GCAGC	4 cut(s)	411, 923, 948, 951
BstX2I	RGATCY	1 cut(s)	601
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	601
BsuI	GTATCC	2 cut(s)	428, 636
BsuRI	GGCC	2 cut(s)	53, 114
BtsCI	GGATG	4 cut(s)	169, 298, 842, 967
Cac8I	GCNNGC	2 cut(s)	277, 818
CciI	TCATGA	1 cut(s)	147
Cfr13I	GGNCC	2 cut(s)	196, 505
Csp6I	GTAC	3 cut(s)	653, 658, 902
CviAII	CATG	4 cut(s)	131, 148, 827, 943
CviQI	GTAC	3 cut(s)	653, 658, 902
DdeI	CTNAG	3 cut(s)	391, 459, 647
DpnI	GATC	2 cut(s)	160, 603
DpnII	GATC	2 cut(s)	158, 601
DraIII	CACNNNGTG	1 cut(s)	413
DriI	GACNNNNNGTC	1 cut(s)	547
EaeI	YGGCCR	1 cut(s)	51
Eam1105I	GACNNNNNGTC	1 cut(s)	547
EciI	GGCGGA	1 cut(s)	655
Ecl136II	GAGCTC	2 cut(s)	85, 253
Eco130I	CCWWGG	1 cut(s)	770
Eco24I	GRGCYC	2 cut(s)	87, 255
Eco31I	GGTCTC	1 cut(s)	360
Eco32I	GATATC	1 cut(s)	324
Eco47I	GGWCC	2 cut(s)	196, 505
Eco53kI	GAGCTC	2 cut(s)	85, 253
Eco57I	CTGAAG	1 cut(s)	987
EcoICRI	GAGCTC	2 cut(s)	85, 253
EcoO109I	RGGNCCY	2 cut(s)	196, 505
EcoRII	CCWGG	1 cut(s)	53
EcoRV	GATATC	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	770
EcoT38I	GRGCYC	2 cut(s)	87, 255
ErhI	CCWWGG	1 cut(s)	770
FaeI	CATG	4 cut(s)	134, 151, 830, 946
FalI	AAGNNNNNCTT	4 cut(s)	183, 215, 754, 786
FatI	CATG	4 cut(s)	130, 147, 826, 942
FblI	GTMKAC	1 cut(s)	697
Fnu4HI	GCNGC	5 cut(s)	240, 400, 912, 937, 940
FokI	GGATG	4 cut(s)	156, 305, 829, 974
FriOI	GRGCYC	2 cut(s)	87, 255
Fsp4HI	GCNGC	5 cut(s)	240, 400, 912, 937, 940
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	5 cut(s)	240, 400, 912, 937, 940
HaeIII	GGCC	2 cut(s)	53, 114
Hin1II	CATG	4 cut(s)	134, 151, 830, 946
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	1 cut(s)	186
HphI	GGTGA	1 cut(s)	998
Hpy166II	GTNNAC	2 cut(s)	75, 698
Hpy188I	TCNGA	4 cut(s)	65, 434, 680, 932
Hpy188III	TCNNGA	4 cut(s)	148, 327, 608, 668
Hpy8I	GTNNAC	2 cut(s)	75, 698
HpyAV	CCTTC	1 cut(s)	800
HpyCH4III	ACNGT	2 cut(s)	475, 657
HpyCH4IV	ACGT	1 cut(s)	543
HpyCH4V	TGCA	6 cut(s)	136, 270, 352, 454, 539, 911
HpyF10VI	GCNNNNNNNGC	3 cut(s)	276, 460, 494
HpyF3I	CTNAG	3 cut(s)	391, 459, 647
HpySE526I	ACGT	1 cut(s)	543
Hsp92II	CATG	4 cut(s)	134, 151, 830, 946
KpnI	GGTACC	1 cut(s)	905
Kzo9I	GATC	2 cut(s)	158, 601
LmnI	GCTCC	1 cut(s)	584
Lsp1109I	GCAGC	4 cut(s)	411, 923, 948, 951
LweI	GCATC	2 cut(s)	178, 952
MaeI	CTAG	1 cut(s)	218
MaeII	ACGT	1 cut(s)	543
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	2 cut(s)	160, 603
MboI	GATC	2 cut(s)	158, 601
MboII	GAAGA	4 cut(s)	301, 611, 869, 980
MfeI	CAATTG	1 cut(s)	633
MflI	RGATCY	1 cut(s)	601
MhlI	GDGCHC	2 cut(s)	87, 255
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	5 cut(s)	40, 633, 663, 756, 1012
MluNI	TGGCCA	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	562
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	5 cut(s)	96, 372, 759, 834, 1015
MslI	CAYNNNNRTG	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	53
MspCI	CTTAAG	1 cut(s)	371
MspR9I	CCNGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	633
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	3 cut(s)	276, 460, 494
NdeII	GATC	2 cut(s)	158, 601
NlaIII	CATG	4 cut(s)	134, 151, 830, 946
NlaIV	GGNNCC	1 cut(s)	903
NmuCI	GTSAC	1 cut(s)	559
NspI	RCATGY	1 cut(s)	134
PagI	TCATGA	1 cut(s)	147
PciI	ACATGT	1 cut(s)	130
PctI	GAATGC	1 cut(s)	454
PfeI	GAWTC	1 cut(s)	186
PkrI	GCNGC	5 cut(s)	241, 401, 913, 938, 941
PpuMI	RGGWCCY	2 cut(s)	196, 505
PscI	ACATGT	1 cut(s)	130
Psp124BI	GAGCTC	2 cut(s)	87, 255
Psp5II	RGGWCCY	2 cut(s)	196, 505
Psp6I	CCWGG	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	903
PspPI	GGNCC	2 cut(s)	196, 505
PspPPI	RGGWCCY	2 cut(s)	196, 505
PsuI	RGATCY	1 cut(s)	601
RsaI	GTAC	3 cut(s)	654, 659, 903
RsaNI	GTAC	3 cut(s)	653, 658, 902
RseI	CAYNNNNRTG	1 cut(s)	227
SacI	GAGCTC	2 cut(s)	87, 255
SaqAI	TTAA	5 cut(s)	96, 372, 759, 834, 1015
SatI	GCNGC	5 cut(s)	240, 400, 912, 937, 940
Sau3AI	GATC	2 cut(s)	158, 601
Sau96I	GGNCC	2 cut(s)	196, 505
ScaI	AGTACT	1 cut(s)	659
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	2 cut(s)	87, 255
SfaNI	GCATC	2 cut(s)	178, 952
SfcI	CTRYAG	1 cut(s)	474
SinI	GGWCC	2 cut(s)	196, 505
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	2 cut(s)	371, 606
SmoI	CTYRAG	2 cut(s)	371, 606
Sse9I	AATT	5 cut(s)	40, 633, 663, 756, 1012
SsiI	CCGC	2 cut(s)	239, 640
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	1 cut(s)	218
SstI	GAGCTC	2 cut(s)	87, 255
StyD4I	CCNGG	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	770
TaaI	ACNGT	2 cut(s)	475, 657
TaiI	ACGT	1 cut(s)	546
TaqI	TCGA	3 cut(s)	184, 616, 690
TasI	AATT	5 cut(s)	40, 633, 663, 756, 1012
TatI	WGTACW	1 cut(s)	657
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	5 cut(s)	96, 372, 759, 834, 1015
Tru9I	TTAA	5 cut(s)	96, 372, 759, 834, 1015
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	4 cut(s)	399, 911, 936, 939
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	4 cut(s)	35, 91, 141, 164
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	2 cut(s)	196, 505
XapI	RAATTY	1 cut(s)	40
XceI	RCATGY	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	697
XspI	CTAG	1 cut(s)	218
ZrmI	AGTACT	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.