Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Reverse (-)

5524643 .. 5527310

Gene Structure 2668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00222490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAATGGCTTACGCCGTCACCGTAGAGTACCGACGAGAACCACCCTCAAACTAATGAAGTCAGATCTGAGAAAACTGAAAGTATGTCATAGAGACCTTAAGCTTGAAAATGCACTCTTAGATGACAGCACAGCACCTCGGGTGAAAATATGCGATTTTGGATCCTCAGAGTCACTACTACTACATTCTTGGCAAAAATCTACTGCGGGAACACCGGCTTATATTGCACCTGAAGTCCTATCTGAAAAACAATATGATGGAGCGACAGTACAGATTGCAGATGTTTGGTCTTGTGGAGTCTCCCTATATGTCATGATTGTTGGAGCATATCCCTTTGAAGATCCTAAGGACCCTATGAACTTTAGAAAAACAATTCTGCGGACCCTTACTGTATGCTACTCAATCCCTGATAATGTACGAGTTTCTGTGGAATGTAGAGACTTGCTCGCCAAGATATTTGTGGCAAACCCAGAAAAGAGAATTACAATTTCAGAAATTAAGAACCACTGTTGGTTCTTGAAGAATTTACCTATGGAAATGTGGGAAGGAGGAAGTTGGGAAAGCAATGATGTAAACCATCCATCCCAAAGCATTGAAGAAGTCCAGTCTATAATACAAGAGGCAAGAAAACCTTTAAAGGTCCCAACTGTCAATAGGCATCTCATTGGAAGCAGCATGGCTATTGATGATGCTGAATTAAACAAGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

236

Amino Acids

26.88

Weight (kDa)

8.48

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	23 - 168	4.3e-14	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	25 - 172	6.3e-34	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	206, 379
AclWI	GGATC	3 cut(s)	156, 169, 335
AcsI	RAATTY	1 cut(s)	523
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	3 cut(s)	30, 270, 417
AflII	CTTAAG	1 cut(s)	98
AgsI	TTSAA	4 cut(s)	107, 338, 520, 596
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw26I	GTCTC	3 cut(s)	87, 304, 432
AlwI	GGATC	3 cut(s)	156, 169, 335
Ama87I	CYCGRG	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	672
ApoI	RAATTY	1 cut(s)	523
AspS9I	GGNCC	3 cut(s)	349, 381, 640
AsuHPI	GGTGA	2 cut(s)	11, 154
AvaI	CYCGRG	1 cut(s)	138
AvaII	GGWCC	3 cut(s)	349, 381, 640
AxyI	CCTNAGG	1 cut(s)	345
BamHI	GGATCC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	684
BccI	CCATC	3 cut(s)	251, 585, 589
BcoDI	GTCTC	3 cut(s)	87, 304, 432
BfrI	CTTAAG	1 cut(s)	98
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	1 cut(s)	673
BlsI	GCNGC	1 cut(s)	674
Bme18I	GGWCC	3 cut(s)	349, 381, 640
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	3 cut(s)	349, 381, 640
BmiI	GGNNCC	4 cut(s)	163, 351, 383, 642
BmsI	GCATC	2 cut(s)	667, 679
BplI	GAGNNNNNCTC	2 cut(s)	429, 461
BsaI	GGTCTC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bse118I	RCCGGY	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	604
Bse21I	CCTNAGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	571
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	2 cut(s)	577, 581
BseMI	GCAATG	1 cut(s)	571
BseMII	CTCAG	2 cut(s)	59, 180
BseNI	ACTGG	1 cut(s)	604
BseXI	GCAGC	1 cut(s)	684
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	626
BsmAI	GTCTC	3 cut(s)	87, 304, 432
BsmFI	GGGAC	1 cut(s)	626
Bso31I	GGTCTC	1 cut(s)	87
BsoBI	CYCGRG	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	64, 161, 340
BspACI	CCGC	2 cut(s)	206, 379
BspCNI	CTCAG	2 cut(s)	60, 179
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	4 cut(s)	163, 351, 383, 642
BspPI	GGATC	3 cut(s)	156, 169, 335
BspTI	CTTAAG	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	571
BsrFI	RCCGGY	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	604
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	3 cut(s)	64, 161, 340
Bst4CI	ACNGT	5 cut(s)	23, 268, 391, 509, 649
BstAFI	CTTAAG	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	4 cut(s)	68, 118, 166, 345
BstF5I	GGATG	2 cut(s)	577, 581
BstKTI	GATC	3 cut(s)	67, 164, 343
BstMAI	GTCTC	3 cut(s)	87, 304, 432
BstMBI	GATC	3 cut(s)	64, 161, 340
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	684
BstX2I	RGATCY	3 cut(s)	64, 161, 340
BstYI	RGATCY	3 cut(s)	64, 161, 340
Bsu36I	CCTNAGG	1 cut(s)	345
BtsCI	GGATG	2 cut(s)	577, 581
BtsIMutI	CAGTG	1 cut(s)	505
Cac8I	GCNNGC	1 cut(s)	447
CciI	TCATGA	1 cut(s)	312
Cfr10I	RCCGGY	1 cut(s)	214
Cfr13I	GGNCC	3 cut(s)	349, 381, 640
Csp6I	GTAC	3 cut(s)	29, 269, 416
CviAII	CATG	2 cut(s)	313, 676
CviJI	RGCY	4 cut(s)	9, 103, 218, 680
CviKI_1	RGCY	4 cut(s)	9, 103, 218, 680
CviQI	GTAC	3 cut(s)	29, 269, 416
DdeI	CTNAG	4 cut(s)	68, 118, 166, 345
DpnI	GATC	3 cut(s)	66, 163, 342
DpnII	GATC	3 cut(s)	64, 161, 340
DraI	TTTAAA	1 cut(s)	636
Eco31I	GGTCTC	1 cut(s)	87
Eco47I	GGWCC	3 cut(s)	349, 381, 640
Eco57I	CTGAAG	1 cut(s)	252
Eco81I	CCTNAGG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	138
EcoO109I	RGGNCCY	2 cut(s)	349, 640
FaeI	CATG	2 cut(s)	316, 679
FalI	AAGNNNNNCTT	2 cut(s)	616, 648
FaqI	GGGAC	1 cut(s)	626
FatI	CATG	2 cut(s)	312, 675
FauI	CCCGC	1 cut(s)	199
Fnu4HI	GCNGC	1 cut(s)	673
FokI	GGATG	2 cut(s)	564, 568
Fsp4HI	GCNGC	1 cut(s)	673
GluI	GCNGC	1 cut(s)	673
HapII	CCGG	1 cut(s)	215
Hin1II	CATG	2 cut(s)	316, 679
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	2 cut(s)	170, 297
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	2 cut(s)	11, 154
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	5 cut(s)	64, 69, 169, 244, 493
Hpy188III	TCNNGA	2 cut(s)	313, 517
Hpy8I	GTNNAC	1 cut(s)	574
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	539
HpyCH4III	ACNGT	5 cut(s)	23, 268, 391, 509, 649
HpyCH4V	TGCA	3 cut(s)	113, 227, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	4 cut(s)	68, 118, 166, 345
Hsp92II	CATG	2 cut(s)	316, 679
Kzo9I	GATC	3 cut(s)	64, 161, 340
LmnI	GCTCC	2 cut(s)	260, 323
LpnPI	CCDG	5 cut(s)	228, 243, 420, 483, 617
Lsp1109I	GCAGC	1 cut(s)	684
LweI	GCATC	2 cut(s)	667, 679
MaeIII	GTNAC	2 cut(s)	17, 171
MalI	GATC	3 cut(s)	66, 163, 342
MboI	GATC	3 cut(s)	64, 161, 340
MboII	GAAGA	3 cut(s)	350, 532, 608
MflI	RGATCY	3 cut(s)	64, 161, 340
MluCI	AATT	6 cut(s)	372, 480, 486, 495, 523, 695
MlyI	GAGTC	2 cut(s)	179, 306
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	5 cut(s)	56, 147, 175, 542, 613
MseI	TTAA	4 cut(s)	99, 498, 635, 698
MspCI	CTTAAG	1 cut(s)	98
MspI	CCGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	3 cut(s)	64, 161, 340
NlaIII	CATG	2 cut(s)	316, 679
NlaIV	GGNNCC	4 cut(s)	163, 351, 383, 642
NmuCI	GTSAC	2 cut(s)	17, 171
PagI	TCATGA	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	674
PleI	GAGTC	2 cut(s)	178, 305
PpsI	GAGTC	2 cut(s)	178, 305
PpuMI	RGGWCCY	2 cut(s)	349, 640
Psp5II	RGGWCCY	2 cut(s)	349, 640
PspN4I	GGNNCC	4 cut(s)	163, 351, 383, 642
PspPI	GGNCC	3 cut(s)	349, 381, 640
PspPPI	RGGWCCY	2 cut(s)	349, 640
PsuI	RGATCY	3 cut(s)	64, 161, 340
RsaI	GTAC	3 cut(s)	30, 270, 417
RsaNI	GTAC	3 cut(s)	29, 269, 416
SaqAI	TTAA	4 cut(s)	99, 498, 635, 698
SatI	GCNGC	1 cut(s)	673
Sau3AI	GATC	3 cut(s)	64, 161, 340
Sau96I	GGNCC	3 cut(s)	349, 381, 640
SchI	GAGTC	2 cut(s)	179, 306
SetI	ASST	7 cut(s)	99, 105, 139, 232, 532, 634, 642
SfaNI	GCATC	2 cut(s)	667, 679
SinI	GGWCC	3 cut(s)	349, 381, 640
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	6 cut(s)	372, 480, 486, 495, 523, 695
SsiI	CCGC	2 cut(s)	206, 379
TaaI	ACNGT	5 cut(s)	23, 268, 391, 509, 649
TasI	AATT	6 cut(s)	372, 480, 486, 495, 523, 695
TatI	WGTACW	1 cut(s)	268
Tru1I	TTAA	4 cut(s)	99, 498, 635, 698
Tru9I	TTAA	4 cut(s)	99, 498, 635, 698
TscAI	CASTG	1 cut(s)	512
TseFI	GTSAC	2 cut(s)	17, 171
TseI	GCWGC	1 cut(s)	672
Tsp45I	GTSAC	2 cut(s)	17, 171
TspDTI	ATGAA	3 cut(s)	17, 71, 371
TspRI	CASTG	1 cut(s)	512
Vha464I	CTTAAG	1 cut(s)	98
VpaK11BI	GGWCC	3 cut(s)	349, 381, 640
XapI	RAATTY	1 cut(s)	523
XcmI	CCANNNNNNNNNTGG	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.