Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Forward (+)

65677196 .. 65679094

Gene Structure 1899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG488500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGAGAGGTATGAGATTGTGAAGGATATTGGGTCTGGGAATTTTGGGGTGGCAAGGTTGGTCAGAGATAAGTGGACCAGAGAACTCTTTGCTGTTAAGTTCATTGAGAGAGGCCAGAAGTCACTACTGCAGTCTCAGCCAAAATCAACTGTAGGAACACCAGCCTATATTGCTCCTGAGGTCCTATCTAAAAAGCAATATGATGGAAAAATTGCAGATGTTTGGTCTTGTGGAGTCACCTTATATGTGATGCTAGCTGGAGCATATCCTTTTGAAGATCCTGATGACCCTAACAACTTCAGAAAAACAATTAATCGGATCCTTGGCGTACAGTACTCGATTCCAGATCATGTTCAAGTTTCCATCGAATGTAGACATCTATTATCTCAGATATTTGTGGAAAACCCCGAAAAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

138

Amino Acids

15.71

Weight (kDa)

7.74

Isoelectric Point (pI)

33.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	45 - 138	1.2e-18	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	373
AclWI	GGATC	3 cut(s)	272, 313, 326
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	283
AfaI	GTAC	2 cut(s)	330, 335
AgsI	TTSAA	2 cut(s)	275, 356
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	3 cut(s)	272, 313, 326
AoxI	GGCC	1 cut(s)	112
ApoI	RAATTY	1 cut(s)	40
AseI	ATTAAT	1 cut(s)	312
AspS9I	GGNCC	2 cut(s)	75, 181
AsuHPI	GGTGA	1 cut(s)	229
AsuNHI	GCTAGC	1 cut(s)	253
AvaII	GGWCC	2 cut(s)	75, 181
AxyI	CCTNAGG	1 cut(s)	177
BamHI	GGATCC	1 cut(s)	318
BccI	CCATC	2 cut(s)	197, 371
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	2 cut(s)	128, 150
BmcAI	AGTACT	1 cut(s)	335
Bme18I	GGWCC	2 cut(s)	75, 181
BmgT120I	GGNCC	2 cut(s)	75, 181
BmiI	GGNNCC	1 cut(s)	320
BmsI	GCATC	1 cut(s)	240
BmtI	GCTAGC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	322
Bse21I	CCTNAGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	322
BseMII	CTCAG	3 cut(s)	149, 168, 401
BshFI	GGCC	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	114
Bsp143I	GATC	3 cut(s)	277, 318, 346
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	3 cut(s)	148, 169, 400
BspLI	GGNNCC	1 cut(s)	320
BspMAI	CTGCAG	1 cut(s)	132
BspOI	GCTAGC	1 cut(s)	257
BspPI	GGATC	3 cut(s)	272, 313, 326
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	3 cut(s)	277, 318, 346
BssT1I	CCWWGG	1 cut(s)	322
Bst4CI	ACNGT	2 cut(s)	151, 333
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	3 cut(s)	135, 177, 387
BstKTI	GATC	3 cut(s)	280, 321, 349
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	3 cut(s)	277, 318, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 170
BstSFI	CTRYAG	2 cut(s)	128, 150
BstX2I	RGATCY	2 cut(s)	277, 318
BstYI	RGATCY	2 cut(s)	277, 318
Bsu36I	CCTNAGG	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	255
Cfr13I	GGNCC	2 cut(s)	75, 181
Csp6I	GTAC	2 cut(s)	329, 334
CviAII	CATG	1 cut(s)	350
CviJI	RGCY	4 cut(s)	114, 139, 164, 257
CviKI_1	RGCY	4 cut(s)	114, 139, 164, 257
CviQI	GTAC	2 cut(s)	329, 334
DdeI	CTNAG	3 cut(s)	135, 177, 387
DpnI	GATC	3 cut(s)	279, 320, 348
DpnII	GATC	3 cut(s)	277, 318, 346
Eco130I	CCWWGG	1 cut(s)	322
Eco47I	GGWCC	2 cut(s)	75, 181
Eco57I	CTGAAG	1 cut(s)	283
Eco81I	CCTNAGG	1 cut(s)	177
EcoO109I	RGGNCCY	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	1 cut(s)	353
FaiI	YATR	7 cut(s)	12, 168, 201, 244, 246, 265, 351
FatI	CATG	1 cut(s)	349
FblI	GTMKAC	1 cut(s)	373
FspBI	CTAG	1 cut(s)	254
GsuI	CTGGAG	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	353
HinfI	GANTC	2 cut(s)	234, 340
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	2 cut(s)	75, 374
Hpy188I	TCNGA	4 cut(s)	65, 302, 318, 390
Hpy188III	TCNNGA	3 cut(s)	176, 281, 344
Hpy8I	GTNNAC	2 cut(s)	75, 374
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	2 cut(s)	151, 333
HpyCH4V	TGCA	2 cut(s)	130, 215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 170
HpyF3I	CTNAG	3 cut(s)	135, 177, 387
Hsp92II	CATG	1 cut(s)	353
Kzo9I	GATC	3 cut(s)	277, 318, 346
LmnI	GCTCC	2 cut(s)	178, 260
LpnPI	CCDG	8 cut(s)	21, 91, 128, 174, 189, 243, 294, 357
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	1 cut(s)	254
MaeIII	GTNAC	2 cut(s)	120, 235
MalI	GATC	3 cut(s)	279, 320, 348
MboI	GATC	3 cut(s)	277, 318, 346
MboII	GAAGA	1 cut(s)	287
MflI	RGATCY	2 cut(s)	277, 318
MluCI	AATT	3 cut(s)	40, 210, 309
MlyI	GAGTC	1 cut(s)	243
MnlI	CCTC	2 cut(s)	104, 172
MseI	TTAA	2 cut(s)	96, 312
MwoI	GCNNNNNNNGC	2 cut(s)	136, 170
NdeII	GATC	3 cut(s)	277, 318, 346
NheI	GCTAGC	1 cut(s)	253
NlaIII	CATG	1 cut(s)	353
NlaIV	GGNNCC	1 cut(s)	320
NmuCI	GTSAC	2 cut(s)	120, 235
PfeI	GAWTC	1 cut(s)	340
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PpuMI	RGGWCCY	1 cut(s)	181
PshBI	ATTAAT	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	320
PspPI	GGNCC	2 cut(s)	75, 181
PspPPI	RGGWCCY	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	132
PsuI	RGATCY	2 cut(s)	277, 318
RsaI	GTAC	2 cut(s)	330, 335
RsaNI	GTAC	2 cut(s)	329, 334
SaqAI	TTAA	2 cut(s)	96, 312
Sau3AI	GATC	3 cut(s)	277, 318, 346
Sau96I	GGNCC	2 cut(s)	75, 181
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	1 cut(s)	243
SetI	ASST	5 cut(s)	11, 59, 183, 242, 259
SfaNI	GCATC	1 cut(s)	240
SfcI	CTRYAG	2 cut(s)	128, 150
SinI	GGWCC	2 cut(s)	75, 181
Sse9I	AATT	3 cut(s)	40, 210, 309
SspMI	CTAG	1 cut(s)	254
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	2 cut(s)	151, 333
TaqI	TCGA	2 cut(s)	338, 366
TasI	AATT	3 cut(s)	40, 210, 309
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	2 cut(s)	96, 312
Tru9I	TTAA	2 cut(s)	96, 312
TseFI	GTSAC	2 cut(s)	120, 235
Tsp45I	GTSAC	2 cut(s)	120, 235
TspDTI	ATGAA	1 cut(s)	91
VpaK11BI	GGWCC	2 cut(s)	75, 181
VspI	ATTAAT	1 cut(s)	312
XapI	RAATTY	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	373
XspI	CTAG	1 cut(s)	254
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.