Rorug07G0316900
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
32143150 .. 32144216
1067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0316900.1

Sequence Viewer

Length: 900 bp
ATGACCGGCGAGAAAAGAAGAATAGATGATGACCTAACGGAAGATCTTACCAAAAGAAAAAAGCAAAGGACGATTGACGAGTCTAACGACAATGACGTTGCAAGTAATAATGACTCGACCGAAATCAGAAGCCAACTGTCTAGTGCCAACGATAATGATAAGTCGGAAGCCCACAAAATGCAGGCTGATTTTTTTTCTGTCCCCTCCTTCCGAGTCGGCACTCTCGATCTTCCCTCGGAGGTGGAGGAGGAGCACAATCGTATCCTCAAGTGTGTTGAGGAGTTGAAGAAGATACATGACAAAGTTGTTGAACTCGAAAACAATTTTTCGGCAGAGCTAGATCAATGGGAGGCAAAATATTGGGATGAGGCTTCGAAGGACGAGCACGATAAGGATCTTCAAAAGAAGTTTTGTGCGAAGAAAGAAACATGGGAAGAAAAATACCAGGAGCAGTATGAGCCTTTCTATAGGAAGAGGTACGAGATTGTCAATGGTTTAAGTGAAAGTGATCAAGGAATAATCCAAACGGATTTGAGCTTGACTTCATCTTTGATCCTGAAAGGAATCTTCATTTCAAAAATCCGGTCCCTGACTAAAACATTTTACGGCGAAATAGAGAGGACAATTGGGACAGAGATCAAGTGGTGCACACCACTCGACGAATATTGCTTGACACAAAAGTATAACATTAGGAGGAAAGTACTGAAATCCAAAAAACGGGAAAGCTTCTTCAACTTGTTTAACAGTACTCCCGGAATTGATAAACCGCTATACGAAGGTGCGATTCCACGAGCTTATGCAATTGGCTTAACAATTCGAGACAAAATTATTCCTCATGCCATATCGTGGTACAATGGGAATGAATATGAAGATGGCAAGAATGTGCTTAAGTTCATTTGA

Protein Analysis

299

Amino Acids

34.98

Weight (kDa)

5.42

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 201 - 286 4.4e-10 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000609)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 846
AciI CCGC 1 cut(s) 767
AclWI GGATC 2 cut(s) 402, 547
AfaI GTAC 4 cut(s) 479, 702, 748, 851
AfiI CCNNNNNNNGG 2 cut(s) 717, 846
AflII CTTAAG 1 cut(s) 887
AgsI TTSAA 5 cut(s) 286, 311, 401, 576, 733
AjnI CCWGG 1 cut(s) 444
AluBI AGCT 4 cut(s) 337, 537, 726, 794
AluI AGCT 4 cut(s) 337, 537, 726, 794
Alw21I GWGCWC 3 cut(s) 255, 387, 650
Alw26I GTCTC 1 cut(s) 813
Alw44I GTGCAC 1 cut(s) 646
AlwI GGATC 2 cut(s) 402, 547
ApaLI GTGCAC 1 cut(s) 646
ArsI GACNNNNNNTTYG 4 cut(s) 532, 564, 569, 601
AspS9I GGNCC 1 cut(s) 585
AsuC2I CCSGG 1 cut(s) 753
AsuII TTCGAA 1 cut(s) 374
AvaII GGWCC 1 cut(s) 585
BaeGI GKGCMC 1 cut(s) 650
BaeI ACNNNNGTAYC 2 cut(s) 244, 277
BauI CACGAG 1 cut(s) 789
Bbv12I GWGCWC 3 cut(s) 255, 387, 650
BccI CCATC 1 cut(s) 866
BceAI ACGGC 1 cut(s) 622
BcgI CGANNNNNNTGC 2 cut(s) 637, 671
BciT130I CCWGG 1 cut(s) 446
BciVI GTATCC 1 cut(s) 272
BclI TGATCA 1 cut(s) 508
BcnI CCSGG 1 cut(s) 753
BcoDI GTCTC 1 cut(s) 813
BfaI CTAG 2 cut(s) 141, 338
BfmI CTRYAG 1 cut(s) 466
BfrI CTTAAG 1 cut(s) 887
BfuI GTATCC 1 cut(s) 272
BglII AGATCT 1 cut(s) 43
BmcAI AGTACT 2 cut(s) 702, 748
Bme1390I CCNGG 2 cut(s) 446, 753
Bme18I GGWCC 1 cut(s) 585
BmgT120I GGNCC 1 cut(s) 585
BmiI GGNNCC 1 cut(s) 587
BmrFI CCNGG 2 cut(s) 446, 753
Bpu14I TTCGAA 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 753
BsaBI GATNNNNATC 1 cut(s) 393
BsaJI CCNNGG 1 cut(s) 234
BsaWI WCCGGW 1 cut(s) 582
Bsc4I CCNNNNNNNGG 2 cut(s) 717, 846
Bse118I RCCGGY 1 cut(s) 5
Bse8I GATNNNNATC 1 cut(s) 393
BseBI CCWGG 1 cut(s) 446
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 1 cut(s) 370
BseJI GATNNNNATC 1 cut(s) 393
BseLI CCNNNNNNNGG 2 cut(s) 717, 846
BseRI GAGGAG 3 cut(s) 260, 263, 293
BseSI GKGCMC 1 cut(s) 650
Bsh1285I CGRYCG 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 120
BsiHKAI GWGCWC 3 cut(s) 255, 387, 650
BsiSI CCGG 3 cut(s) 6, 583, 753
BslFI GGGAC 3 cut(s) 185, 571, 643
BslI CCNNNNNNNGG 2 cut(s) 717, 846
BsmAI GTCTC 1 cut(s) 813
BsmFI GGGAC 3 cut(s) 185, 571, 643
Bsp119I TTCGAA 1 cut(s) 374
Bsp1286I GDGCHC 3 cut(s) 255, 387, 650
Bsp143I GATC 7 cut(s) 43, 226, 340, 394, 508, 552, 636
BspACI CCGC 1 cut(s) 767
BspLI GGNNCC 1 cut(s) 587
BspPI GGATC 2 cut(s) 402, 547
BspT104I TTCGAA 1 cut(s) 374
BspTI CTTAAG 1 cut(s) 887
BsrFI RCCGGY 1 cut(s) 5
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 7 cut(s) 43, 226, 340, 394, 508, 552, 636
BssSI CACGAG 1 cut(s) 789
Bst2BI CACGAG 1 cut(s) 789
Bst2UI CCWGG 1 cut(s) 446
Bst4CI ACNGT 2 cut(s) 138, 746
Bst6I CTCTTC 1 cut(s) 467
BstAFI CTTAAG 1 cut(s) 887
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 183
BstF5I GGATG 1 cut(s) 370
BstKTI GATC 7 cut(s) 46, 229, 343, 397, 511, 555, 639
BstMAI GTCTC 1 cut(s) 813
BstMBI GATC 7 cut(s) 43, 226, 340, 394, 508, 552, 636
BstMCI CGRYCG 1 cut(s) 120
BstMWI GCNNNNNNNGC 1 cut(s) 457
BstNI CCWGG 1 cut(s) 446
BstSCI CCNGG 2 cut(s) 444, 751
BstSFI CTRYAG 1 cut(s) 466
BstSLI GKGCMC 1 cut(s) 650
BstX2I RGATCY 2 cut(s) 43, 394
BstYI RGATCY 2 cut(s) 43, 394
BsuI GTATCC 1 cut(s) 272
BtsCI GGATG 1 cut(s) 370
Cac8I GCNNGC 1 cut(s) 183
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 1 cut(s) 585
Csp6I GTAC 4 cut(s) 478, 701, 747, 850
CviAII CATG 3 cut(s) 296, 429, 836
CviQI GTAC 4 cut(s) 478, 701, 747, 850
DpnI GATC 7 cut(s) 45, 228, 342, 396, 510, 554, 638
DpnII GATC 7 cut(s) 43, 226, 340, 394, 508, 552, 636
Eam1104I CTCTTC 1 cut(s) 467
EarI CTCTTC 1 cut(s) 467
Eco47I GGWCC 1 cut(s) 585
EcoRII CCWGG 1 cut(s) 444
FaeI CATG 3 cut(s) 299, 432, 839
FaqI GGGAC 3 cut(s) 185, 571, 643
FatI CATG 3 cut(s) 295, 428, 835
FbaI TGATCA 1 cut(s) 508
FokI GGATG 1 cut(s) 377
FspBI CTAG 2 cut(s) 141, 338
HapII CCGG 3 cut(s) 6, 583, 753
Hin1II CATG 3 cut(s) 299, 432, 839
HindIII AAGCTT 1 cut(s) 724
HinfI GANTC 5 cut(s) 80, 113, 213, 564, 784
HpaII CCGG 3 cut(s) 6, 583, 753
Hpy166II GTNNAC 1 cut(s) 648
Hpy188I TCNGA 4 cut(s) 128, 166, 212, 238
Hpy188III TCNNGA 3 cut(s) 224, 556, 818
Hpy8I GTNNAC 1 cut(s) 648
Hpy99I CGWCG 1 cut(s) 662
HpyAV CCTTC 3 cut(s) 217, 370, 770
HpyCH4III ACNGT 2 cut(s) 138, 746
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 4 cut(s) 101, 181, 648, 800
HpyF10VI GCNNNNNNNGC 1 cut(s) 457
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 3 cut(s) 299, 432, 839
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 7 cut(s) 43, 226, 340, 394, 508, 552, 636
LmnI GCTCC 2 cut(s) 250, 448
LpnPI CCDG 8 cut(s) 19, 167, 431, 458, 569, 596, 602, 766
MaeI CTAG 2 cut(s) 141, 338
MaeII ACGT 1 cut(s) 96
MalI GATC 7 cut(s) 45, 228, 342, 396, 510, 554, 638
MboI GATC 7 cut(s) 43, 226, 340, 394, 508, 552, 636
MfeI CAATTG 2 cut(s) 624, 801
MflI RGATCY 2 cut(s) 43, 394
MhlI GDGCHC 3 cut(s) 255, 387, 650
MluCI AATT 6 cut(s) 322, 624, 756, 801, 813, 825
MlyI GAGTC 3 cut(s) 89, 107, 222
MmeI TCCRAC 1 cut(s) 144
MseI TTAA 4 cut(s) 497, 741, 809, 888
MspCI CTTAAG 1 cut(s) 887
MspI CCGG 3 cut(s) 6, 583, 753
MspR9I CCNGG 2 cut(s) 446, 753
MunI CAATTG 2 cut(s) 624, 801
MvaI CCWGG 1 cut(s) 446
MwoI GCNNNNNNNGC 1 cut(s) 457
NciI CCSGG 1 cut(s) 753
NdeII GATC 7 cut(s) 43, 226, 340, 394, 508, 552, 636
NlaIII CATG 3 cut(s) 299, 432, 839
NlaIV GGNNCC 1 cut(s) 587
NspV TTCGAA 1 cut(s) 374
PcsI WCGNNNNNNNCGW 3 cut(s) 84, 93, 222
PfeI GAWTC 2 cut(s) 564, 784
PflMI CCANNNNNTGG 1 cut(s) 846
PfoI TCCNGGA 1 cut(s) 751
PleI GAGTC 3 cut(s) 88, 107, 221
PpsI GAGTC 3 cut(s) 88, 107, 221
Psp6I CCWGG 1 cut(s) 444
PspGI CCWGG 1 cut(s) 444
PspN4I GGNNCC 1 cut(s) 587
PspPI GGNCC 1 cut(s) 585
PsuI RGATCY 2 cut(s) 43, 394
RsaI GTAC 4 cut(s) 479, 702, 748, 851
RsaNI GTAC 4 cut(s) 478, 701, 747, 850
SaqAI TTAA 4 cut(s) 497, 741, 809, 888
Sau3AI GATC 7 cut(s) 43, 226, 340, 394, 508, 552, 636
Sau96I GGNCC 1 cut(s) 585
ScaI AGTACT 2 cut(s) 702, 748
SchI GAGTC 3 cut(s) 89, 107, 222
ScrFI CCNGG 2 cut(s) 446, 753
SduI GDGCHC 3 cut(s) 255, 387, 650
SetI ASST 9 cut(s) 36, 99, 243, 339, 479, 539, 728, 781, 796
SfcI CTRYAG 1 cut(s) 466
SfuI TTCGAA 1 cut(s) 374
SinI GGWCC 1 cut(s) 585
SmlI CTYRAG 2 cut(s) 266, 887
SmoI CTYRAG 2 cut(s) 266, 887
Sse9I AATT 6 cut(s) 322, 624, 756, 801, 813, 825
SsiI CCGC 1 cut(s) 767
SspI AATATT 2 cut(s) 359, 665
SspMI CTAG 2 cut(s) 141, 338
StyD4I CCNGG 2 cut(s) 444, 751
TaaI ACNGT 2 cut(s) 138, 746
TaiI ACGT 1 cut(s) 99
TaqI TCGA 6 cut(s) 116, 225, 315, 374, 657, 817
TaqII GACCGA 1 cut(s) 134
TasI AATT 6 cut(s) 322, 624, 756, 801, 813, 825
TatI WGTACW 2 cut(s) 700, 746
TfiI GAWTC 2 cut(s) 564, 784
Tru1I TTAA 4 cut(s) 497, 741, 809, 888
Tru9I TTAA 4 cut(s) 497, 741, 809, 888
TspDTI ATGAA 5 cut(s) 534, 559, 876, 882, 883
TspGWI ACGGA 2 cut(s) 53, 542
Van91I CCANNNNNTGG 1 cut(s) 846
Vha464I CTTAAG 1 cut(s) 887
VneI GTGCAC 1 cut(s) 646
VpaK11BI GGWCC 1 cut(s) 585
XspI CTAG 2 cut(s) 141, 338
ZrmI AGTACT 2 cut(s) 702, 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.