Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Forward (+)

65091074 .. 65093683

Gene Structure 2610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG457700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCGCCAAGAAACCGGTCGTGTAAAATGGCCAGGAGTGAAAGATACGACCCATAATTGGAAGCGGCACTGCGCCAGATTCGGTACAGATTATGCCGCAAGAGGCCAAAGAGTGACAAGACGCTCTGCAACTTTTATAGCGCCAAAATCTGTTGTGGGAACACCAAATTATATTGCACCTGAAGTCCTATCTAGAAAAAAATATGATGGAAAGATTTCAGATGTCTGGTCTTGTGGAGTCACCTTATTTGTCATGATCTTCGGGGCATATCCCTTTGAAGATCCTCAGGACCCTTTAAACTTTACAAAGACAATCCGGCGAATTCTTAGTGTACACTACTCAATCCCACAAAATATCGGAGTTTCCGGGGAATGTAGGCATCTGTTTTCTAAAATATTTGTGGCAAACCCAGAACAGAGAATAACAATCCCTGAAATTAAGAGCCATCCTTGGTTTGTAAAGAACTTACCTATGGAAATGATGGAAGGAGGAAGTTGGGAAAGCAATGAGGTGAACAATCCATCCCAAAGTGATGAAGAAGTTCAGTCTATAATACAACAGGCAAGAAGACCTTTAAAGGTCCCAACTGTAAGTAGGCATCTCACTGGAAGTAGCATGGCTCTGGATGAAGCTGATGTTGGAGGTCCAGAAACAAATGGTGATTGTGTGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

224

Amino Acids

25.28

Weight (kDa)

9.08

Isoelectric Point (pI)

52.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	48 - 152	5.6e-23	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	55 - 148	1.3e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	64, 96
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	321
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	2 cut(s)	85, 333
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgeI	ACCGGT	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	31
AjuI	GAANNNNNNNTTGG	2 cut(s)	621, 653
AloI	GAACNNNNNNTCC	2 cut(s)	506, 538
AluBI	AGCT	1 cut(s)	632
AluI	AGCT	1 cut(s)	632
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	2 cut(s)	29, 103
ApoI	RAATTY	1 cut(s)	321
AsiGI	ACCGGT	1 cut(s)	14
Asp700I	GAANNNNTTC	2 cut(s)	214, 540
AspLEI	GCGC	4 cut(s)	6, 74, 142, 672
AspS9I	GGNCC	3 cut(s)	289, 580, 644
AsuC2I	CCSGG	1 cut(s)	367
AsuHPI	GGTGA	3 cut(s)	232, 523, 671
AvaII	GGWCC	3 cut(s)	289, 580, 644
AxyI	CCTNAGG	1 cut(s)	285
BalI	TGGCCA	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	574
BccI	CCATC	4 cut(s)	200, 453, 475, 529
BciT130I	CCWGG	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	367
BfaI	CTAG	1 cut(s)	192
BfoI	RGCGCY	1 cut(s)	143
BisI	GCNGC	2 cut(s)	65, 96
BlsI	GCNGC	2 cut(s)	66, 97
Bme1390I	CCNGG	2 cut(s)	33, 367
Bme18I	GGWCC	3 cut(s)	289, 580, 644
BmgT120I	GGNCC	3 cut(s)	289, 580, 644
BmiI	GGNNCC	2 cut(s)	291, 582
BmrFI	CCNGG	2 cut(s)	33, 367
BmsI	GCATC	2 cut(s)	388, 607
BpiI	GAAGAC	1 cut(s)	574
BpuMI	CCSGG	1 cut(s)	367
BsaJI	CCNNGG	2 cut(s)	366, 449
BsaWI	WCCGGW	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	610
Bse21I	CCTNAGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	511
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	366, 449
BseGI	GGATG	3 cut(s)	445, 521, 631
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMI	GCAATG	1 cut(s)	511
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	1 cut(s)	610
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	2 cut(s)	31, 105
BshTI	ACCGGT	1 cut(s)	14
BsiEI	CGRYCG	1 cut(s)	19
BsiSI	CCGG	3 cut(s)	15, 316, 366
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	566
BsnI	GGCC	2 cut(s)	31, 105
Bsp1407I	TGTACA	1 cut(s)	331
Bsp143I	GATC	2 cut(s)	255, 280
BspACI	CCGC	2 cut(s)	64, 96
BspANI	GGCC	2 cut(s)	31, 105
BspCNI	CTCAG	1 cut(s)	298
BspHI	TCATGA	1 cut(s)	252
BspLI	GGNNCC	2 cut(s)	291, 582
BspPI	GGATC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	511
BsrFI	RCCGGY	1 cut(s)	14
BsrGI	TGTACA	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	610
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	2 cut(s)	366, 449
BssMI	GATC	2 cut(s)	255, 280
BssT1I	CCWWGG	1 cut(s)	449
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	589
BstAUI	TGTACA	1 cut(s)	331
BstDEI	CTNAG	2 cut(s)	285, 326
BstF5I	GGATG	3 cut(s)	445, 521, 631
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	4 cut(s)	6, 74, 142, 672
BstKTI	GATC	2 cut(s)	258, 283
BstMBI	GATC	2 cut(s)	255, 280
BstMCI	CGRYCG	1 cut(s)	19
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	31, 365
BstV2I	GAAGAC	1 cut(s)	574
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
Bsu36I	CCTNAGG	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	31, 105
BtsCI	GGATG	3 cut(s)	445, 521, 631
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	2 cut(s)	67, 603
CciI	TCATGA	1 cut(s)	252
CfoI	GCGC	4 cut(s)	6, 74, 142, 672
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	3 cut(s)	289, 580, 644
CseI	GACGC	1 cut(s)	129
Csp6I	GTAC	2 cut(s)	84, 332
CspAI	ACCGGT	1 cut(s)	14
CviAII	CATG	2 cut(s)	253, 616
CviJI	RGCY	5 cut(s)	31, 105, 444, 620, 632
CviKI_1	RGCY	5 cut(s)	31, 105, 444, 620, 632
CviQI	GTAC	2 cut(s)	84, 332
DdeI	CTNAG	2 cut(s)	285, 326
DpnI	GATC	2 cut(s)	257, 282
DpnII	GATC	2 cut(s)	255, 280
DraI	TTTAAA	2 cut(s)	297, 576
EaeI	YGGCCR	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	449
Eco47I	GGWCC	3 cut(s)	289, 580, 644
Eco57I	CTGAAG	1 cut(s)	201
Eco81I	CCTNAGG	1 cut(s)	285
EcoO109I	RGGNCCY	2 cut(s)	289, 580
EcoRI	GAATTC	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	449
ErhI	CCWWGG	1 cut(s)	449
FaeI	CATG	2 cut(s)	256, 619
FalI	AAGNNNNNCTT	2 cut(s)	556, 588
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	2 cut(s)	252, 615
Fnu4HI	GCNGC	2 cut(s)	65, 96
FokI	GGATG	3 cut(s)	432, 508, 638
Fsp4HI	GCNGC	2 cut(s)	65, 96
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	4 cut(s)	5, 73, 141, 671
GluI	GCNGC	2 cut(s)	65, 96
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	2 cut(s)	31, 105
HapII	CCGG	3 cut(s)	15, 316, 366
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	4 cut(s)	6, 74, 142, 672
Hin1II	CATG	2 cut(s)	256, 619
Hin6I	GCGC	4 cut(s)	4, 72, 140, 670
HinP1I	GCGC	4 cut(s)	4, 72, 140, 670
HinfI	GANTC	2 cut(s)	78, 237
HpaII	CCGG	3 cut(s)	15, 316, 366
HphI	GGTGA	3 cut(s)	232, 523, 671
Hpy166II	GTNNAC	3 cut(s)	332, 334, 514
Hpy188I	TCNGA	2 cut(s)	220, 359
Hpy188III	TCNNGA	5 cut(s)	192, 253, 287, 623, 647
Hpy8I	GTNNAC	3 cut(s)	332, 334, 514
HpyAV	CCTTC	1 cut(s)	479
HpyCH4III	ACNGT	1 cut(s)	589
HpyCH4V	TGCA	2 cut(s)	128, 176
HpyF3I	CTNAG	2 cut(s)	285, 326
Hsp92II	CATG	2 cut(s)	256, 619
HspAI	GCGC	4 cut(s)	4, 72, 140, 670
Kzo9I	GATC	2 cut(s)	255, 280
LweI	GCATC	2 cut(s)	388, 607
MaeI	CTAG	1 cut(s)	192
MaeIII	GTNAC	2 cut(s)	112, 238
MalI	GATC	2 cut(s)	257, 282
MboI	GATC	2 cut(s)	255, 280
MboII	GAAGA	4 cut(s)	250, 290, 548, 579
MflI	RGATCY	1 cut(s)	280
MlsI	TGGCCA	1 cut(s)	31
MluCI	AATT	4 cut(s)	55, 166, 321, 435
MluNI	TGGCCA	1 cut(s)	31
MlyI	GAGTC	1 cut(s)	246
MmeI	TCCRAC	1 cut(s)	619
MnlI	CCTC	5 cut(s)	95, 294, 482, 502, 635
Mox20I	TGGCCA	1 cut(s)	31
MroXI	GAANNNNTTC	2 cut(s)	214, 540
MscI	TGGCCA	1 cut(s)	31
MseI	TTAA	3 cut(s)	296, 438, 575
Msp20I	TGGCCA	1 cut(s)	31
MspI	CCGG	3 cut(s)	15, 316, 366
MspR9I	CCNGG	2 cut(s)	33, 367
MvaI	CCWGG	1 cut(s)	33
NciI	CCSGG	1 cut(s)	367
NdeII	GATC	2 cut(s)	255, 280
NlaIII	CATG	2 cut(s)	256, 619
NlaIV	GGNNCC	2 cut(s)	291, 582
NmuCI	GTSAC	2 cut(s)	112, 238
PagI	TCATGA	1 cut(s)	252
PdmI	GAANNNNTTC	2 cut(s)	214, 540
PfeI	GAWTC	1 cut(s)	78
PinAI	ACCGGT	1 cut(s)	14
PkrI	GCNGC	2 cut(s)	66, 97
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PpuMI	RGGWCCY	2 cut(s)	289, 580
Psp5II	RGGWCCY	2 cut(s)	289, 580
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	291, 582
PspPI	GGNCC	3 cut(s)	289, 580, 644
PspPPI	RGGWCCY	2 cut(s)	289, 580
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	2 cut(s)	85, 333
RsaNI	GTAC	2 cut(s)	84, 332
SaqAI	TTAA	3 cut(s)	296, 438, 575
SatI	GCNGC	2 cut(s)	65, 96
Sau3AI	GATC	2 cut(s)	255, 280
Sau96I	GGNCC	3 cut(s)	289, 580, 644
SchI	GAGTC	1 cut(s)	246
ScrFI	CCNGG	2 cut(s)	33, 367
SetI	ASST	8 cut(s)	181, 245, 472, 513, 574, 582, 634, 646
SfaNI	GCATC	2 cut(s)	388, 607
SinI	GGWCC	3 cut(s)	289, 580, 644
Sse9I	AATT	4 cut(s)	55, 166, 321, 435
SsiI	CCGC	2 cut(s)	64, 96
SspI	AATATT	1 cut(s)	396
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	31, 365
StyI	CCWWGG	1 cut(s)	449
TaaI	ACNGT	1 cut(s)	589
TasI	AATT	4 cut(s)	55, 166, 321, 435
TatI	WGTACW	1 cut(s)	331
TauI	GCSGC	2 cut(s)	67, 98
TfiI	GAWTC	1 cut(s)	78
Tru1I	TTAA	3 cut(s)	296, 438, 575
Tru9I	TTAA	3 cut(s)	296, 438, 575
TscAI	CASTG	2 cut(s)	74, 610
TseFI	GTSAC	2 cut(s)	112, 238
Tsp45I	GTSAC	2 cut(s)	112, 238
TspDTI	ATGAA	2 cut(s)	549, 642
TspRI	CASTG	2 cut(s)	74, 610
VpaK11BI	GGWCC	3 cut(s)	289, 580, 644
XapI	RAATTY	1 cut(s)	321
XbaI	TCTAGA	1 cut(s)	191
XmnI	GAANNNNTTC	2 cut(s)	214, 540
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.