Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Forward (+)

65386366 .. 65388889

Gene Structure 2524 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG471600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGAGAGGTATGAGATTGTGAAAGATATTGGGTCTGGGAATTTTGGGGTGGCAAGGTTGGTCAGAGATAAGTGGACCAGAGAATTCTTTGCTGTTAAGTTCATTGAGAGAGGCCAGAAGTCACTACTGCAGTCTCAGCCAAAATCAACTGTAGGAACACCAGCCTATATTGCTCCTGAGGTCCTATCTAAAAAGCAATATGATGGAAAAATTGCAGATGTTTGGTCTTGTGGAGTCACCTTATATGTGATGCTAGTTGGAGCTTATCCTTTTGAAGATCCTGATGATCCTAACAACTTCAGAAAAACAATTGATCGGATCCTTGGCGTACAGTACTCAATTCCAGATCATGTTCAAGTTTCCATTGAATGTAAACATCTTTTATCTCAGATATTTGTGGAAAAACCCGAAAAGAGAATAACAATCGCAGGAATTAAAAACCACCCTTGGTTCTTAAAGAACTTACCCATGGAACTGATGGAAGGAGGAAGTTGGCAGAGCAATGATGTAAATATTCCATCTCAAAGCACTGAAGAAGTTATGTCCATAATTCAAGAGGCAAGAAAATCAGTACAGTCCCCAAACGCAGTTACGCATCTCATCGAAGGCAGCATGGATCTTGATGATTTGGATGCTGAAGTTGAAGACATTGAAACAAGTGGTGATTTTGTATGTCACGTGAGTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

229

Amino Acids

25.81

Weight (kDa)

5.01

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	45 - 151	2.4e-24	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	50 - 146	1.5e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	272, 281, 313, 326, 624
AcsI	RAATTY	2 cut(s)	40, 83
AcuI	CTGAAG	3 cut(s)	283, 552, 657
AcvI	CACGTG	1 cut(s)	679
AfaI	GTAC	3 cut(s)	330, 335, 573
AgsI	TTSAA	6 cut(s)	275, 356, 368, 554, 644, 653
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	5 cut(s)	272, 281, 313, 326, 624
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	609
ApoI	RAATTY	2 cut(s)	40, 83
AspS9I	GGNCC	2 cut(s)	75, 181
AsuHPI	GGTGA	2 cut(s)	229, 674
AvaII	GGWCC	2 cut(s)	75, 181
AxyI	CCTNAGG	1 cut(s)	177
BamHI	GGATCC	1 cut(s)	318
BbrPI	CACGTG	1 cut(s)	679
BbsI	GAAGAC	1 cut(s)	651
BbvI	GCAGC	1 cut(s)	621
BccI	CCATC	3 cut(s)	197, 472, 526
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	2 cut(s)	128, 150
BisI	GCNGC	1 cut(s)	610
BlsI	GCNGC	1 cut(s)	611
BmcAI	AGTACT	1 cut(s)	335
Bme18I	GGWCC	2 cut(s)	75, 181
BmgT120I	GGNCC	2 cut(s)	75, 181
BmiI	GGNNCC	1 cut(s)	320
BmsI	GCATC	3 cut(s)	240, 604, 622
BpiI	GAAGAC	1 cut(s)	651
BsaAI	YACGTR	1 cut(s)	679
BsaJI	CCNNGG	3 cut(s)	322, 446, 468
Bse21I	CCTNAGG	1 cut(s)	177
Bse3DI	GCAATG	1 cut(s)	508
BseDI	CCNNGG	3 cut(s)	322, 446, 468
BseGI	GGATG	1 cut(s)	637
BseMI	GCAATG	1 cut(s)	508
BseMII	CTCAG	3 cut(s)	149, 168, 401
BseXI	GCAGC	1 cut(s)	621
BshFI	GGCC	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	562
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	562
BsnI	GGCC	1 cut(s)	114
Bsp143I	GATC	6 cut(s)	277, 286, 313, 318, 346, 616
Bsp19I	CCATGG	1 cut(s)	468
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	3 cut(s)	148, 169, 400
BspLI	GGNNCC	1 cut(s)	320
BspMAI	CTGCAG	1 cut(s)	132
BspPI	GGATC	5 cut(s)	272, 281, 313, 326, 624
BsrDI	GCAATG	1 cut(s)	508
BssECI	CCNNGG	3 cut(s)	322, 446, 468
BssMI	GATC	6 cut(s)	277, 286, 313, 318, 346, 616
BssT1I	CCWWGG	3 cut(s)	322, 446, 468
Bst4CI	ACNGT	3 cut(s)	151, 333, 576
BstBAI	YACGTR	1 cut(s)	679
BstDEI	CTNAG	3 cut(s)	135, 177, 387
BstDSI	CCRYGG	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	637
BstKTI	GATC	6 cut(s)	280, 289, 316, 321, 349, 619
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	6 cut(s)	277, 286, 313, 318, 346, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 170
BstSFI	CTRYAG	2 cut(s)	128, 150
BstV1I	GCAGC	1 cut(s)	621
BstV2I	GAAGAC	1 cut(s)	651
BstX2I	RGATCY	3 cut(s)	277, 318, 616
BstYI	RGATCY	3 cut(s)	277, 318, 616
Bsu36I	CCTNAGG	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	468
BtsCI	GGATG	1 cut(s)	637
BtsIMutI	CAGTG	1 cut(s)	528
Cfr13I	GGNCC	2 cut(s)	75, 181
Csp6I	GTAC	3 cut(s)	329, 334, 572
CviAII	CATG	3 cut(s)	350, 469, 613
CviJI	RGCY	4 cut(s)	114, 139, 164, 263
CviKI_1	RGCY	4 cut(s)	114, 139, 164, 263
CviQI	GTAC	3 cut(s)	329, 334, 572
DdeI	CTNAG	3 cut(s)	135, 177, 387
DpnI	GATC	6 cut(s)	279, 288, 315, 320, 348, 618
DpnII	GATC	6 cut(s)	277, 286, 313, 318, 346, 616
Eco130I	CCWWGG	3 cut(s)	322, 446, 468
Eco47I	GGWCC	2 cut(s)	75, 181
Eco57I	CTGAAG	3 cut(s)	283, 552, 657
Eco72I	CACGTG	1 cut(s)	679
Eco81I	CCTNAGG	1 cut(s)	177
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	83
EcoT14I	CCWWGG	3 cut(s)	322, 446, 468
ErhI	CCWWGG	3 cut(s)	322, 446, 468
FaeI	CATG	3 cut(s)	353, 472, 616
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	3 cut(s)	349, 468, 612
Fnu4HI	GCNGC	1 cut(s)	610
FokI	GGATG	1 cut(s)	644
Fsp4HI	GCNGC	1 cut(s)	610
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	1 cut(s)	610
HaeIII	GGCC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	353, 472, 616
HinfI	GANTC	1 cut(s)	234
HphI	GGTGA	2 cut(s)	229, 674
Hpy166II	GTNNAC	2 cut(s)	75, 374
Hpy188I	TCNGA	4 cut(s)	65, 302, 318, 390
Hpy188III	TCNNGA	5 cut(s)	176, 281, 344, 554, 620
Hpy8I	GTNNAC	2 cut(s)	75, 374
HpyAV	CCTTC	2 cut(s)	476, 599
HpyCH4III	ACNGT	3 cut(s)	151, 333, 576
HpyCH4IV	ACGT	1 cut(s)	678
HpyCH4V	TGCA	2 cut(s)	130, 215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 170
HpyF3I	CTNAG	3 cut(s)	135, 177, 387
HpySE526I	ACGT	1 cut(s)	678
Hsp92II	CATG	3 cut(s)	353, 472, 616
Kzo9I	GATC	6 cut(s)	277, 286, 313, 318, 346, 616
LmnI	GCTCC	2 cut(s)	178, 260
LpnPI	CCDG	8 cut(s)	21, 91, 128, 174, 189, 294, 357, 414
Lsp1109I	GCAGC	1 cut(s)	621
LweI	GCATC	3 cut(s)	240, 604, 622
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	678
MaeIII	GTNAC	4 cut(s)	120, 235, 589, 674
MalI	GATC	6 cut(s)	279, 288, 315, 320, 348, 618
MboI	GATC	6 cut(s)	277, 286, 313, 318, 346, 616
MboII	GAAGA	3 cut(s)	287, 545, 656
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	3 cut(s)	277, 318, 616
MluCI	AATT	7 cut(s)	40, 83, 210, 309, 339, 432, 549
MlyI	GAGTC	1 cut(s)	243
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	4 cut(s)	104, 172, 479, 550
MseI	TTAA	4 cut(s)	96, 435, 455, 688
MunI	CAATTG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	136, 170
NcoI	CCATGG	1 cut(s)	468
NdeII	GATC	6 cut(s)	277, 286, 313, 318, 346, 616
NlaIII	CATG	3 cut(s)	353, 472, 616
NlaIV	GGNNCC	1 cut(s)	320
NmuCI	GTSAC	3 cut(s)	120, 235, 674
PkrI	GCNGC	1 cut(s)	611
PleI	GAGTC	1 cut(s)	242
PmaCI	CACGTG	1 cut(s)	679
PmlI	CACGTG	1 cut(s)	679
PpsI	GAGTC	1 cut(s)	242
Ppu21I	YACGTR	1 cut(s)	679
PpuMI	RGGWCCY	1 cut(s)	181
Psp5II	RGGWCCY	1 cut(s)	181
PspCI	CACGTG	1 cut(s)	679
PspN4I	GGNNCC	1 cut(s)	320
PspPI	GGNCC	2 cut(s)	75, 181
PspPPI	RGGWCCY	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	132
PsuI	RGATCY	3 cut(s)	277, 318, 616
RsaI	GTAC	3 cut(s)	330, 335, 573
RsaNI	GTAC	3 cut(s)	329, 334, 572
SaqAI	TTAA	4 cut(s)	96, 435, 455, 688
SatI	GCNGC	1 cut(s)	610
Sau3AI	GATC	6 cut(s)	277, 286, 313, 318, 346, 616
Sau96I	GGNCC	2 cut(s)	75, 181
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	1 cut(s)	243
SetI	ASST	6 cut(s)	11, 59, 183, 242, 265, 681
SfaNI	GCATC	3 cut(s)	240, 604, 622
SfcI	CTRYAG	2 cut(s)	128, 150
SinI	GGWCC	2 cut(s)	75, 181
Sse9I	AATT	7 cut(s)	40, 83, 210, 309, 339, 432, 549
SspI	AATATT	1 cut(s)	514
SspMI	CTAG	1 cut(s)	254
StyI	CCWWGG	3 cut(s)	322, 446, 468
TaaI	ACNGT	3 cut(s)	151, 333, 576
TaiI	ACGT	1 cut(s)	681
TaqI	TCGA	1 cut(s)	603
TasI	AATT	7 cut(s)	40, 83, 210, 309, 339, 432, 549
TatI	WGTACW	2 cut(s)	333, 571
Tru1I	TTAA	4 cut(s)	96, 435, 455, 688
Tru9I	TTAA	4 cut(s)	96, 435, 455, 688
TscAI	CASTG	1 cut(s)	535
TseFI	GTSAC	3 cut(s)	120, 235, 674
TseI	GCWGC	1 cut(s)	609
Tsp45I	GTSAC	3 cut(s)	120, 235, 674
TspDTI	ATGAA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	535
VpaK11BI	GGWCC	2 cut(s)	75, 181
XapI	RAATTY	2 cut(s)	40, 83
XcmI	CCANNNNNNNNNTGG	1 cut(s)	475
XspI	CTAG	1 cut(s)	254
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.