Rw7G039160
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
60158576 .. 60164646
6071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G039160.1

Sequence Viewer

Length: 978 bp
ATGGAGAAGTATGAGATTGTGAAAGATATTGGGTCTGGGGCTTCTGGGGTAGCAAGGTTGGTAAGAGATAAATGTACCGGAGAGCACTTTGCTGTTAAGTTCATCGAGAGAGGCAACAAGATCAATGAAAATGTACAAGGGGAAATCATGAACCACAGATCCTTGAAGCATCCCAATGTTGTTCAATTCAAAGAGGTCCTGCTGACACCAACTCATCTAGCCATTGTGATGGAGTATGCTGCTGGAGGAGAACTCTATGAGAGAATATGCAAAGCCAGTAGATTTAGTGAGAATGAGGCAAGGTTTTTCTTCCAGCAATTGATATCAGGAGTTGGTTACTGCCATAAAATGAAAGTATGTCATAGAGATCTTAAGCTGGAAAATGCACTCTTAGATGACAGCACGGCACCTCGGGTGAAAATATGCGATTTTGGATCGTCAAAGTCACTACTACTACATTCTCTGCAAAAATCTGCTGCGGGAACTCCGGCTTATATTGCACCTGAGGTCCTATCTGAAAAACAATATGATGGAGAGATTGCAGATGTTTGGTCTTGTGGGGTCTCCCTATATGTCATGATTGTTGGAGCATATCCCTTTGAAGATCCTAAGGACCCTACGAACCTTAGAAAAACAATTCTGCGGATCCTTACTGTATGCTACTCAATCCCTGGTAATGTACGAGTTTCTGTGGAATGTAGAGACTTGCTCGCTAAGATATTTGTGGCAAACCCAGAAAAGAGAATTACAATTTCAGAAATTAAGAACCACTGTTGGTTCTTAAAGGATTTACCTATGGAAATGTGGGAAGGAGGAAGTTGGGAAAGCAATGATGTAAACCATCCATCCCAAAGCATAGAAGAAGTCCTGTCCATAATACAAGAGGCAAGAAAAACTTTAAAGGCCCCAACTGTCAGTAGGAATCTCGTTGGAAGCAGCATGGCTATTGATGATGCTGATGTTGTTGGAGGTAATTAA

Protein Analysis

325

Amino Acids

36.28

Weight (kDa)

6.33

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 260 1.6e-68 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 6 - 256 1.3e-30 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000609)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 406
AciI CCGC 2 cut(s) 479, 643
AclWI GGATC 5 cut(s) 153, 442, 599, 640, 653
AfaI GTAC 3 cut(s) 76, 135, 681
AflII CTTAAG 1 cut(s) 371
AgsI TTSAA 4 cut(s) 166, 185, 190, 602
AjnI CCWGG 1 cut(s) 670
AloI GAACNNNNNNTCC 2 cut(s) 143, 175
AluBI AGCT 1 cut(s) 376
AluI AGCT 1 cut(s) 376
Alw21I GWGCWC 1 cut(s) 87
Alw26I GTCTC 2 cut(s) 568, 696
AlwI GGATC 5 cut(s) 153, 442, 599, 640, 653
Ama87I CYCGRG 1 cut(s) 411
AoxI GGCC 1 cut(s) 903
ApeKI GCWGC 3 cut(s) 239, 476, 936
AspS9I GGNCC 4 cut(s) 196, 508, 613, 904
AsuHPI GGTGA 1 cut(s) 427
AvaI CYCGRG 1 cut(s) 411
AvaII GGWCC 3 cut(s) 196, 508, 613
AxyI CCTNAGG 2 cut(s) 504, 609
BamHI GGATCC 1 cut(s) 645
BanI GGYRCC 1 cut(s) 406
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 3 cut(s) 226, 463, 948
BccI CCATC 4 cut(s) 223, 524, 849, 853
BceAI ACGGC 1 cut(s) 420
BciT130I CCWGG 1 cut(s) 672
BcoDI GTCTC 2 cut(s) 568, 696
BfaI CTAG 1 cut(s) 218
BfrI CTTAAG 1 cut(s) 371
BglII AGATCT 1 cut(s) 367
BisI GCNGC 3 cut(s) 240, 477, 937
BlsI GCNGC 3 cut(s) 241, 478, 938
Bme1390I CCNGG 1 cut(s) 672
Bme18I GGWCC 3 cut(s) 196, 508, 613
BmeT110I CYCGRG 1 cut(s) 411
BmgT120I GGNCC 4 cut(s) 196, 508, 613, 904
BmiI GGNNCC 4 cut(s) 408, 615, 647, 906
BmrFI CCNGG 1 cut(s) 672
BmsI GCATC 2 cut(s) 178, 943
BplI GAGNNNNNCTC 4 cut(s) 237, 269, 693, 725
BpmI CTGGAG 1 cut(s) 264
BsaI GGTCTC 1 cut(s) 568
BsaJI CCNNGG 2 cut(s) 410, 670
BsaWI WCCGGW 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 276
Bse21I CCTNAGG 2 cut(s) 504, 609
Bse3DI GCAATG 1 cut(s) 835
BseBI CCWGG 1 cut(s) 672
BseDI CCNNGG 2 cut(s) 410, 670
BseGI GGATG 3 cut(s) 169, 841, 845
BseMI GCAATG 1 cut(s) 835
BseMII CTCAG 1 cut(s) 495
BseNI ACTGG 1 cut(s) 276
BseRI GAGGAG 1 cut(s) 261
BseXI GCAGC 3 cut(s) 226, 463, 948
BshFI GGCC 1 cut(s) 905
BshNI GGYRCC 1 cut(s) 406
BsiHKAI GWGCWC 1 cut(s) 87
BsiHKCI CYCGRG 1 cut(s) 411
BsiSI CCGG 2 cut(s) 78, 488
BsmAI GTCTC 2 cut(s) 568, 696
BsnI GGCC 1 cut(s) 905
Bso31I GGTCTC 1 cut(s) 568
BsoBI CYCGRG 1 cut(s) 411
Bsp1286I GDGCHC 1 cut(s) 87
Bsp1407I TGTACA 1 cut(s) 133
Bsp143I GATC 6 cut(s) 120, 158, 367, 434, 604, 645
BspACI CCGC 2 cut(s) 479, 643
BspANI GGCC 1 cut(s) 905
BspCNI CTCAG 1 cut(s) 496
BspHI TCATGA 2 cut(s) 147, 576
BspLI GGNNCC 4 cut(s) 408, 615, 647, 906
BspPI GGATC 5 cut(s) 153, 442, 599, 640, 653
BspT107I GGYRCC 1 cut(s) 406
BspTI CTTAAG 1 cut(s) 371
BspTNI GGTCTC 1 cut(s) 568
BsrDI GCAATG 1 cut(s) 835
BsrGI TGTACA 1 cut(s) 133
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 2 cut(s) 410, 670
BssMI GATC 6 cut(s) 120, 158, 367, 434, 604, 645
Bst2UI CCWGG 1 cut(s) 672
Bst4CI ACNGT 3 cut(s) 655, 773, 913
BstAFI CTTAAG 1 cut(s) 371
BstAUI TGTACA 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 711
BstDEI CTNAG 5 cut(s) 391, 504, 609, 626, 714
BstF5I GGATG 3 cut(s) 169, 841, 845
BstKTI GATC 6 cut(s) 123, 161, 370, 437, 607, 648
BstMAI GTCTC 2 cut(s) 568, 696
BstMBI GATC 6 cut(s) 120, 158, 367, 434, 604, 645
BstMWI GCNNNNNNNGC 1 cut(s) 497
BstNI CCWGG 1 cut(s) 672
BstSCI CCNGG 1 cut(s) 670
BstV1I GCAGC 3 cut(s) 226, 463, 948
BstX2I RGATCY 4 cut(s) 158, 367, 604, 645
BstXI CCANNNNNNTGG 1 cut(s) 229
BstYI RGATCY 4 cut(s) 158, 367, 604, 645
Bsu36I CCTNAGG 2 cut(s) 504, 609
BsuRI GGCC 1 cut(s) 905
BtsCI GGATG 3 cut(s) 169, 841, 845
BtsIMutI CAGTG 1 cut(s) 769
Cac8I GCNNGC 1 cut(s) 711
CciI TCATGA 2 cut(s) 147, 576
Cfr13I GGNCC 4 cut(s) 196, 508, 613, 904
Csp6I GTAC 3 cut(s) 75, 134, 680
CviAII CATG 3 cut(s) 148, 577, 940
CviJI RGCY 7 cut(s) 41, 221, 275, 376, 491, 905, 944
CviKI_1 RGCY 7 cut(s) 41, 221, 275, 376, 491, 905, 944
CviQI GTAC 3 cut(s) 75, 134, 680
DdeI CTNAG 5 cut(s) 391, 504, 609, 626, 714
DpnI GATC 6 cut(s) 122, 160, 369, 436, 606, 647
DpnII GATC 6 cut(s) 120, 158, 367, 434, 604, 645
DraI TTTAAA 1 cut(s) 900
Eco31I GGTCTC 1 cut(s) 568
Eco32I GATATC 1 cut(s) 324
Eco47I GGWCC 3 cut(s) 196, 508, 613
Eco81I CCTNAGG 2 cut(s) 504, 609
Eco88I CYCGRG 1 cut(s) 411
EcoO109I RGGNCCY 4 cut(s) 196, 508, 613, 904
EcoRII CCWGG 1 cut(s) 670
EcoRV GATATC 1 cut(s) 324
FaeI CATG 3 cut(s) 151, 580, 943
FalI AAGNNNNNCTT 2 cut(s) 880, 912
FatI CATG 3 cut(s) 147, 576, 939
FauI CCCGC 1 cut(s) 472
Fnu4HI GCNGC 3 cut(s) 240, 477, 937
FokI GGATG 3 cut(s) 156, 828, 832
Fsp4HI GCNGC 3 cut(s) 240, 477, 937
FspBI CTAG 1 cut(s) 218
GluI GCNGC 3 cut(s) 240, 477, 937
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 1 cut(s) 905
HapII CCGG 2 cut(s) 78, 488
Hin1II CATG 3 cut(s) 151, 580, 943
HinfI GANTC 1 cut(s) 922
HpaII CCGG 2 cut(s) 78, 488
HphI GGTGA 1 cut(s) 427
Hpy166II GTNNAC 1 cut(s) 838
Hpy188I TCNGA 2 cut(s) 517, 757
Hpy188III TCNNGA 4 cut(s) 106, 148, 327, 577
Hpy8I GTNNAC 1 cut(s) 838
HpyAV CCTTC 1 cut(s) 803
HpyCH4III ACNGT 3 cut(s) 655, 773, 913
HpyCH4V TGCA 5 cut(s) 270, 386, 466, 500, 542
HpyF10VI GCNNNNNNNGC 1 cut(s) 497
HpyF3I CTNAG 5 cut(s) 391, 504, 609, 626, 714
Hsp92II CATG 3 cut(s) 151, 580, 943
Kzo9I GATC 6 cut(s) 120, 158, 367, 434, 604, 645
LmnI GCTCC 1 cut(s) 587
Lsp1109I GCAGC 3 cut(s) 226, 463, 948
LweI GCATC 2 cut(s) 178, 943
MaeI CTAG 1 cut(s) 218
MaeIII GTNAC 2 cut(s) 335, 444
MalI GATC 6 cut(s) 122, 160, 369, 436, 606, 647
MboI GATC 6 cut(s) 120, 158, 367, 434, 604, 645
MboII GAAGA 3 cut(s) 301, 614, 872
MfeI CAATTG 1 cut(s) 317
MflI RGATCY 4 cut(s) 158, 367, 604, 645
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 7 cut(s) 185, 317, 636, 744, 750, 759, 973
MmeI TCCRAC 3 cut(s) 565, 910, 946
MnlI CCTC 9 cut(s) 104, 187, 239, 289, 420, 499, 806, 877, 962
MseI TTAA 6 cut(s) 96, 372, 762, 782, 899, 976
MslI CAYNNNNRTG 2 cut(s) 174, 227
MspCI CTTAAG 1 cut(s) 371
MspI CCGG 2 cut(s) 78, 488
MspR9I CCNGG 1 cut(s) 672
MunI CAATTG 1 cut(s) 317
MvaI CCWGG 1 cut(s) 672
MwoI GCNNNNNNNGC 1 cut(s) 497
NdeII GATC 6 cut(s) 120, 158, 367, 434, 604, 645
NlaIII CATG 3 cut(s) 151, 580, 943
NlaIV GGNNCC 4 cut(s) 408, 615, 647, 906
NmuCI GTSAC 1 cut(s) 444
PagI TCATGA 2 cut(s) 147, 576
PfeI GAWTC 1 cut(s) 922
PkrI GCNGC 3 cut(s) 241, 478, 938
PpuMI RGGWCCY 3 cut(s) 196, 508, 613
Psp5II RGGWCCY 3 cut(s) 196, 508, 613
Psp6I CCWGG 1 cut(s) 670
PspGI CCWGG 1 cut(s) 670
PspN4I GGNNCC 4 cut(s) 408, 615, 647, 906
PspPI GGNCC 4 cut(s) 196, 508, 613, 904
PspPPI RGGWCCY 3 cut(s) 196, 508, 613
PsuI RGATCY 4 cut(s) 158, 367, 604, 645
RsaI GTAC 3 cut(s) 76, 135, 681
RsaNI GTAC 3 cut(s) 75, 134, 680
RseI CAYNNNNRTG 2 cut(s) 174, 227
SaqAI TTAA 6 cut(s) 96, 372, 762, 782, 899, 976
SatI GCNGC 3 cut(s) 240, 477, 937
Sau3AI GATC 6 cut(s) 120, 158, 367, 434, 604, 645
Sau96I GGNCC 4 cut(s) 196, 508, 613, 904
ScrFI CCNGG 1 cut(s) 672
SduI GDGCHC 1 cut(s) 87
SfaNI GCATC 2 cut(s) 178, 943
SinI GGWCC 3 cut(s) 196, 508, 613
SmiMI CAYNNNNRTG 2 cut(s) 174, 227
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 7 cut(s) 185, 317, 636, 744, 750, 759, 973
SsiI CCGC 2 cut(s) 479, 643
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 1 cut(s) 670
TaaI ACNGT 3 cut(s) 655, 773, 913
TaqI TCGA 1 cut(s) 105
TasI AATT 7 cut(s) 185, 317, 636, 744, 750, 759, 973
TatI WGTACW 1 cut(s) 133
TfiI GAWTC 1 cut(s) 922
Tru1I TTAA 6 cut(s) 96, 372, 762, 782, 899, 976
Tru9I TTAA 6 cut(s) 96, 372, 762, 782, 899, 976
TscAI CASTG 1 cut(s) 776
TseFI GTSAC 1 cut(s) 444
TseI GCWGC 3 cut(s) 239, 476, 936
Tsp45I GTSAC 1 cut(s) 444
TspDTI ATGAA 4 cut(s) 91, 141, 164, 365
TspRI CASTG 1 cut(s) 776
Vha464I CTTAAG 1 cut(s) 371
VpaK11BI GGWCC 3 cut(s) 196, 508, 613
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.