Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004165.1

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Forward (+)

143189 .. 145730

Gene Structure 2542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004165.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atggagaagtatgaggttgtgaaggatattgggtctgggaattttggtgtagcaaggctggtcagagacaagaatacccatgaactcttagctgttaagttcattgagagaggccttaagatagatgaaaatgtgctgagggaaatcatgaaccacagatccttgaagcatcccaatattgttcagttcaaagaggttttgctgacaccaactcatttagccattgtgatggagtatgctgctggaggagaactctatgacagaatagtcaaggctgttaggtttagtgagaatgaggcaaggtttttcttccagcaattgatatccggagttagttactgtcatacaatgcaaatatgtcatagagaccttaagcttgaaaatacactcttagatgacagcgcagcgcctcgtgtgaaaatatgtgattttggatactcaaagtcattactaagttctctgccaaagtctactgtgggaacacctgcttatattgcacctgaagttctatctaaaaaacaatatgatggacagattgcagatgtttggtcttgtggagtcacattatatgtcatgcttgttggagcatatccctttgaagatcctaaggaccctatgaattttagaaaaacaattcggcggatccttactgtacgctacgtaatcccggacagtgtgcgaatttctgtggaatgtagacaccttttgtctaagatttttgttgcaaacccggaaaagagaataacaattccagaaattaagacccaccgttggtttgcaaagaacttacctctggaaatgaaggaaggaggaacttgggagaataatgctgtaaacacaccatcccaaagcattgaagaagttcagtccataataaaagaggcaagaaaacctttgaaggtcccaactgtcagtaggcattgcgttggaagcagcatggctattgatgatgctgatgttgaaggtaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

323

Amino Acids

36.65

Weight (kDa)

8.75

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	493
AasI	GACNNNNNNGTC	1 cut(s)	266
Acc36I	ACCTGC	1 cut(s)	493
AccI	GTMKAC	2 cut(s)	470, 697
AccIII	TCCGGA	1 cut(s)	326
AciI	CCGC	1 cut(s)	640
AclWI	GGATC	4 cut(s)	153, 596, 637, 650
AcsI	RAATTY	3 cut(s)	40, 619, 681
AcuI	CTGAAG	1 cut(s)	522
AfaI	GTAC	1 cut(s)	654
AfiI	CCNNNNNNNGG	1 cut(s)	771
AflII	CTTAAG	2 cut(s)	116, 371
AgsI	TTSAA	7 cut(s)	166, 190, 380, 599, 857, 898, 962
AloI	GAACNNNNNNTCC	2 cut(s)	143, 175
AluBI	AGCT	2 cut(s)	92, 376
AluI	AGCT	2 cut(s)	92, 376
Alw26I	GTCTC	2 cut(s)	60, 360
AlwI	GGATC	4 cut(s)	153, 596, 637, 650
Aor13HI	TCCGGA	1 cut(s)	326
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	3 cut(s)	239, 404, 933
ApoI	RAATTY	3 cut(s)	40, 619, 681
Asp700I	GAANNNNTTC	1 cut(s)	861
AspLEI	GCGC	2 cut(s)	404, 409
AspS9I	GGNCC	2 cut(s)	610, 901
AsuC2I	CCSGG	2 cut(s)	668, 731
AvaII	GGWCC	2 cut(s)	610, 901
AxyI	CCTNAGG	1 cut(s)	606
BamHI	GGATCC	1 cut(s)	642
BauI	CACGAG	1 cut(s)	411
BbvCI	CCTCAGC	1 cut(s)	137
BbvI	GCAGC	3 cut(s)	226, 416, 945
BccI	CCATC	3 cut(s)	223, 521, 850
BciVI	GTATCC	1 cut(s)	428
BcnI	CCSGG	2 cut(s)	668, 731
BcoDI	GTCTC	2 cut(s)	60, 360
BfoI	RGCGCY	1 cut(s)	410
BfrI	CTTAAG	2 cut(s)	116, 371
BfuAI	ACCTGC	1 cut(s)	493
BfuI	GTATCC	1 cut(s)	428
BisI	GCNGC	3 cut(s)	240, 405, 934
BlsI	GCNGC	3 cut(s)	241, 406, 935
Bme1390I	CCNGG	2 cut(s)	668, 731
Bme18I	GGWCC	2 cut(s)	610, 901
BmgT120I	GGNCC	2 cut(s)	610, 901
BmiI	GGNNCC	3 cut(s)	612, 644, 903
BmrFI	CCNGG	2 cut(s)	668, 731
BmsI	GCATC	2 cut(s)	178, 940
BplI	GAGNNNNNCTC	2 cut(s)	237, 269
BpmI	CTGGAG	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	137
BpuMI	CCSGG	2 cut(s)	668, 731
BsaAI	YACGTR	1 cut(s)	661
BsaI	GGTCTC	1 cut(s)	360
BsaWI	WCCGGW	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	1 cut(s)	771
Bse21I	CCTNAGG	1 cut(s)	606
Bse3DI	GCAATG	1 cut(s)	919
BseAI	TCCGGA	1 cut(s)	326
BseGI	GGATG	2 cut(s)	169, 842
BseLI	CCNNNNNNNGG	1 cut(s)	771
BseMI	GCAATG	1 cut(s)	919
BseMII	CTCAG	1 cut(s)	128
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	3 cut(s)	226, 416, 945
BshFI	GGCC	1 cut(s)	114
BsiSI	CCGG	3 cut(s)	327, 668, 731
BslFI	GGGAC	1 cut(s)	887
BslI	CCNNNNNNNGG	1 cut(s)	771
BsmAI	GTCTC	2 cut(s)	60, 360
BsmFI	GGGAC	1 cut(s)	887
BsnI	GGCC	1 cut(s)	114
Bso31I	GGTCTC	1 cut(s)	360
Bsp13I	TCCGGA	1 cut(s)	326
Bsp143I	GATC	3 cut(s)	158, 601, 642
BspACI	CCGC	1 cut(s)	640
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	129
BspEI	TCCGGA	1 cut(s)	326
BspHI	TCATGA	1 cut(s)	147
BspLI	GGNNCC	3 cut(s)	612, 644, 903
BspMI	ACCTGC	1 cut(s)	493
BspPI	GGATC	4 cut(s)	153, 596, 637, 650
BspTI	CTTAAG	2 cut(s)	116, 371
BspTNI	GGTCTC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	919
BssMI	GATC	3 cut(s)	158, 601, 642
BssSI	CACGAG	1 cut(s)	411
Bst2BI	CACGAG	1 cut(s)	411
Bst4CI	ACNGT	6 cut(s)	341, 475, 652, 674, 770, 910
BstAFI	CTTAAG	2 cut(s)	116, 371
BstBAI	YACGTR	1 cut(s)	661
BstDEI	CTNAG	6 cut(s)	88, 137, 391, 452, 606, 711
BstF5I	GGATG	2 cut(s)	169, 842
BstH2I	RGCGCY	1 cut(s)	410
BstHHI	GCGC	2 cut(s)	404, 409
BstKTI	GATC	3 cut(s)	161, 604, 645
BstMAI	GTCTC	2 cut(s)	60, 360
BstMBI	GATC	3 cut(s)	158, 601, 642
BstMWI	GCNNNNNNNGC	2 cut(s)	494, 930
BstSCI	CCNGG	2 cut(s)	666, 729
BstSNI	TACGTA	1 cut(s)	661
BstV1I	GCAGC	3 cut(s)	226, 416, 945
BstX2I	RGATCY	3 cut(s)	158, 601, 642
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	3 cut(s)	158, 601, 642
Bsu36I	CCTNAGG	1 cut(s)	606
BsuI	GTATCC	1 cut(s)	428
BsuRI	GGCC	1 cut(s)	114
BtsCI	GGATG	2 cut(s)	169, 842
BtsIMutI	CAGTG	1 cut(s)	679
BveI	ACCTGC	1 cut(s)	493
CciI	TCATGA	1 cut(s)	147
CfoI	GCGC	2 cut(s)	404, 409
Cfr13I	GGNCC	2 cut(s)	610, 901
Csp6I	GTAC	1 cut(s)	653
CviAII	CATG	4 cut(s)	80, 148, 574, 937
CviJI	RGCY	7 cut(s)	58, 92, 114, 221, 275, 376, 941
CviKI_1	RGCY	7 cut(s)	58, 92, 114, 221, 275, 376, 941
CviQI	GTAC	1 cut(s)	653
DdeI	CTNAG	6 cut(s)	88, 137, 391, 452, 606, 711
DpnI	GATC	3 cut(s)	160, 603, 644
DpnII	GATC	3 cut(s)	158, 601, 642
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	655
Eco105I	TACGTA	1 cut(s)	661
Eco147I	AGGCCT	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	360
Eco32I	GATATC	1 cut(s)	324
Eco47I	GGWCC	2 cut(s)	610, 901
Eco57I	CTGAAG	1 cut(s)	522
Eco81I	CCTNAGG	1 cut(s)	606
EcoO109I	RGGNCCY	2 cut(s)	610, 901
EcoRV	GATATC	1 cut(s)	324
FaeI	CATG	4 cut(s)	83, 151, 577, 940
FalI	AAGNNNNNCTT	2 cut(s)	877, 909
FaqI	GGGAC	1 cut(s)	887
FatI	CATG	4 cut(s)	79, 147, 573, 936
FblI	GTMKAC	2 cut(s)	470, 697
Fnu4HI	GCNGC	3 cut(s)	240, 405, 934
FokI	GGATG	2 cut(s)	156, 829
Fsp4HI	GCNGC	3 cut(s)	240, 405, 934
GlaI	GCGC	2 cut(s)	403, 408
GluI	GCNGC	3 cut(s)	240, 405, 934
GsuI	CTGGAG	1 cut(s)	264
HaeII	RGCGCY	1 cut(s)	410
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	3 cut(s)	327, 668, 731
HhaI	GCGC	2 cut(s)	404, 409
Hin1II	CATG	4 cut(s)	83, 151, 577, 940
Hin6I	GCGC	2 cut(s)	402, 407
HinP1I	GCGC	2 cut(s)	402, 407
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	1 cut(s)	558
HpaII	CCGG	3 cut(s)	327, 668, 731
Hpy166II	GTNNAC	3 cut(s)	471, 698, 835
Hpy188I	TCNGA	1 cut(s)	65
Hpy188III	TCNNGA	4 cut(s)	148, 327, 752, 794
Hpy8I	GTNNAC	3 cut(s)	471, 698, 835
HpyAV	CCTTC	5 cut(s)	16, 796, 800, 892, 956
HpyCH4III	ACNGT	6 cut(s)	341, 475, 652, 674, 770, 910
HpyCH4IV	ACGT	1 cut(s)	660
HpyCH4V	TGCA	5 cut(s)	352, 497, 539, 725, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	494, 930
HpyF3I	CTNAG	6 cut(s)	88, 137, 391, 452, 606, 711
HpySE526I	ACGT	1 cut(s)	660
Hsp92II	CATG	4 cut(s)	83, 151, 577, 940
HspAI	GCGC	2 cut(s)	402, 407
Kpn2I	TCCGGA	1 cut(s)	326
Kzo9I	GATC	3 cut(s)	158, 601, 642
LmnI	GCTCC	1 cut(s)	584
Lsp1109I	GCAGC	3 cut(s)	226, 416, 945
LweI	GCATC	2 cut(s)	178, 940
MaeII	ACGT	1 cut(s)	660
MaeIII	GTNAC	2 cut(s)	335, 559
MalI	GATC	3 cut(s)	160, 603, 644
MboI	GATC	3 cut(s)	158, 601, 642
MboII	GAAGA	3 cut(s)	301, 611, 869
MfeI	CAATTG	1 cut(s)	317
MflI	RGATCY	3 cut(s)	158, 601, 642
MluCI	AATT	7 cut(s)	40, 317, 619, 633, 681, 747, 756
MlyI	GAGTC	1 cut(s)	567
MmeI	TCCRAC	2 cut(s)	562, 907
MroI	TCCGGA	1 cut(s)	326
MroXI	GAANNNNTTC	1 cut(s)	861
MseI	TTAA	4 cut(s)	96, 117, 372, 759
MslI	CAYNNNNRTG	1 cut(s)	227
MspCI	CTTAAG	2 cut(s)	116, 371
MspI	CCGG	3 cut(s)	327, 668, 731
MspR9I	CCNGG	2 cut(s)	668, 731
MteI	GCGCNGCGC	1 cut(s)	405
MunI	CAATTG	1 cut(s)	317
MwoI	GCNNNNNNNGC	2 cut(s)	494, 930
NciI	CCSGG	2 cut(s)	668, 731
NdeII	GATC	3 cut(s)	158, 601, 642
NlaIII	CATG	4 cut(s)	83, 151, 577, 940
NlaIV	GGNNCC	3 cut(s)	612, 644, 903
NmuCI	GTSAC	1 cut(s)	559
PagI	TCATGA	1 cut(s)	147
PaqCI	CACCTGC	1 cut(s)	493
PceI	AGGCCT	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	861
PfoI	TCCNGGA	1 cut(s)	666
PkrI	GCNGC	3 cut(s)	241, 406, 935
PleI	GAGTC	1 cut(s)	566
PpsI	GAGTC	1 cut(s)	566
Ppu21I	YACGTR	1 cut(s)	661
PpuMI	RGGWCCY	2 cut(s)	610, 901
Psp5II	RGGWCCY	2 cut(s)	610, 901
PspN4I	GGNNCC	3 cut(s)	612, 644, 903
PspPI	GGNCC	2 cut(s)	610, 901
PspPPI	RGGWCCY	2 cut(s)	610, 901
PsuI	RGATCY	3 cut(s)	158, 601, 642
RsaI	GTAC	1 cut(s)	654
RsaNI	GTAC	1 cut(s)	653
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	4 cut(s)	96, 117, 372, 759
SatI	GCNGC	3 cut(s)	240, 405, 934
Sau3AI	GATC	3 cut(s)	158, 601, 642
Sau96I	GGNCC	2 cut(s)	610, 901
SchI	GAGTC	1 cut(s)	567
ScrFI	CCNGG	2 cut(s)	668, 731
SfaNI	GCATC	2 cut(s)	178, 940
SinI	GGWCC	2 cut(s)	610, 901
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	2 cut(s)	116, 371
SmoI	CTYRAG	2 cut(s)	116, 371
SnaBI	TACGTA	1 cut(s)	661
Sse9I	AATT	7 cut(s)	40, 317, 619, 633, 681, 747, 756
SseBI	AGGCCT	1 cut(s)	114
SsiI	CCGC	1 cut(s)	640
SspI	AATATT	1 cut(s)	178
StuI	AGGCCT	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	666, 729
TaaI	ACNGT	6 cut(s)	341, 475, 652, 674, 770, 910
TaiI	ACGT	1 cut(s)	663
TasI	AATT	7 cut(s)	40, 317, 619, 633, 681, 747, 756
Tru1I	TTAA	4 cut(s)	96, 117, 372, 759
Tru9I	TTAA	4 cut(s)	96, 117, 372, 759
TscAI	CASTG	1 cut(s)	679
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	3 cut(s)	239, 404, 933
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	6 cut(s)	91, 96, 141, 164, 632, 815
TspRI	CASTG	1 cut(s)	679
Vha464I	CTTAAG	2 cut(s)	116, 371
VpaK11BI	GGWCC	2 cut(s)	610, 901
XapI	RAATTY	3 cut(s)	40, 619, 681
XmiI	GTMKAC	2 cut(s)	470, 697
XmnI	GAANNNNTTC	1 cut(s)	861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.