Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Forward (+)

65749447 .. 65751303

Gene Structure 1857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG488600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGAGAAGTATGAGGTTGTGAAAGATATTGGGTCTGGGAATTTTGGTGTAGCGAGGCTGGTCCGAGACAAGAATACCCAAGAACTCTTAGCTGTTAAGTTTATTGAGAGAGGCCTTAAGCAAATATGTCATAGAGACCTTAAGCTTGAAAATACACTCTTAGATGACAGTGCAGCACCTCGTGTGAAAATATGTGATTTTGGATACTCGAAGTCATTACTGAGTTCTCTGCCAAAGTCTACTGTGGGAACACCTGCTTATATTGCACCTGAAGTTCTATCTAAAAAACAATATGACGGACAGATTGCAGATGTTTGGTCTTGTGGAGTCACATTATATGTCATGCTCGTCGGAGCATATCCCTTTGAAGATCCTAAGGACCCTATGAACTTTAGAAAAACAATTCGGCGGATCCTTACTGTACGCTATGTAATCCCAGACAGTGTGCGAATTTCTGTGGAATGTAGACACCTTTTGTCTAAGATTTTTGTTGCAAATCCGGAAAAGGTAACATGGCTTTCATTTTGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

177

Amino Acids

20.12

Weight (kDa)

9.07

Isoelectric Point (pI)

27.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	40 - 169	3e-31	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	40 - 127	3.9e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	262
Acc36I	ACCTGC	1 cut(s)	262
AccI	GTMKAC	2 cut(s)	239, 466
AccIII	TCCGGA	1 cut(s)	499
AciI	CCGC	1 cut(s)	409
AclWI	GGATC	3 cut(s)	365, 406, 419
AcsI	RAATTY	2 cut(s)	40, 450
AcuI	CTGAAG	1 cut(s)	291
AdeI	CACNNNGTG	1 cut(s)	182
AfaI	GTAC	1 cut(s)	423
AflII	CTTAAG	2 cut(s)	116, 140
AgsI	TTSAA	2 cut(s)	149, 368
AluBI	AGCT	2 cut(s)	92, 145
AluI	AGCT	2 cut(s)	92, 145
Alw26I	GTCTC	2 cut(s)	60, 129
AlwI	GGATC	3 cut(s)	365, 406, 419
Aor13HI	TCCGGA	1 cut(s)	499
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	2 cut(s)	40, 450
AspS9I	GGNCC	2 cut(s)	61, 379
AvaII	GGWCC	2 cut(s)	61, 379
AxyI	CCTNAGG	1 cut(s)	375
BamHI	GGATCC	1 cut(s)	411
BauI	CACGAG	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	185
BciVI	GTATCC	1 cut(s)	197
BcoDI	GTCTC	2 cut(s)	60, 129
BfrI	CTTAAG	2 cut(s)	116, 140
BfuAI	ACCTGC	1 cut(s)	262
BfuI	GTATCC	1 cut(s)	197
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
Bme18I	GGWCC	2 cut(s)	61, 379
BmgT120I	GGNCC	2 cut(s)	61, 379
BmiI	GGNNCC	2 cut(s)	381, 413
BsaI	GGTCTC	1 cut(s)	129
BsaWI	WCCGGW	1 cut(s)	499
Bse21I	CCTNAGG	1 cut(s)	375
BseAI	TCCGGA	1 cut(s)	499
BseMII	CTCAG	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	185
BsgI	GTGCAG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	500
BsmAI	GTCTC	2 cut(s)	60, 129
BsnI	GGCC	1 cut(s)	114
Bso31I	GGTCTC	1 cut(s)	129
Bsp13I	TCCGGA	1 cut(s)	499
Bsp143I	GATC	2 cut(s)	370, 411
BspACI	CCGC	1 cut(s)	409
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	213
BspEI	TCCGGA	1 cut(s)	499
BspLI	GGNNCC	2 cut(s)	381, 413
BspMI	ACCTGC	1 cut(s)	262
BspPI	GGATC	3 cut(s)	365, 406, 419
BspTI	CTTAAG	2 cut(s)	116, 140
BspTNI	GGTCTC	1 cut(s)	129
BssMI	GATC	2 cut(s)	370, 411
BssSI	CACGAG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	180
Bst4CI	ACNGT	4 cut(s)	170, 244, 421, 443
BstAFI	CTTAAG	2 cut(s)	116, 140
BstDEI	CTNAG	5 cut(s)	88, 160, 221, 375, 480
BstKTI	GATC	2 cut(s)	373, 414
BstMAI	GTCTC	2 cut(s)	60, 129
BstMBI	GATC	2 cut(s)	370, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	185
BstX2I	RGATCY	2 cut(s)	370, 411
BstYI	RGATCY	2 cut(s)	370, 411
Bsu36I	CCTNAGG	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	197
BsuRI	GGCC	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	175, 448
BveI	ACCTGC	1 cut(s)	262
Cfr13I	GGNCC	2 cut(s)	61, 379
Csp6I	GTAC	1 cut(s)	422
CviAII	CATG	2 cut(s)	343, 513
CviJI	RGCY	5 cut(s)	58, 92, 114, 145, 517
CviKI_1	RGCY	5 cut(s)	58, 92, 114, 145, 517
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	5 cut(s)	88, 160, 221, 375, 480
DpnI	GATC	2 cut(s)	372, 413
DpnII	GATC	2 cut(s)	370, 411
DraIII	CACNNNGTG	1 cut(s)	182
EciI	GGCGGA	1 cut(s)	424
Eco147I	AGGCCT	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	129
Eco47I	GGWCC	2 cut(s)	61, 379
Eco57I	CTGAAG	1 cut(s)	291
Eco81I	CCTNAGG	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	379
FaeI	CATG	2 cut(s)	346, 516
FatI	CATG	2 cut(s)	342, 512
FblI	GTMKAC	2 cut(s)	239, 466
Fnu4HI	GCNGC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	174
GluI	GCNGC	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	1 cut(s)	500
Hin1II	CATG	2 cut(s)	346, 516
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	1 cut(s)	327
HpaII	CCGG	1 cut(s)	500
Hpy166II	GTNNAC	2 cut(s)	240, 467
Hpy188I	TCNGA	2 cut(s)	65, 353
Hpy188III	TCNNGA	1 cut(s)	500
Hpy8I	GTNNAC	2 cut(s)	240, 467
Hpy99I	CGWCG	1 cut(s)	353
HpyCH4III	ACNGT	4 cut(s)	170, 244, 421, 443
HpyCH4V	TGCA	4 cut(s)	173, 266, 308, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	5 cut(s)	88, 160, 221, 375, 480
Hsp92II	CATG	2 cut(s)	346, 516
Kpn2I	TCCGGA	1 cut(s)	499
Kzo9I	GATC	2 cut(s)	370, 411
LmnI	GCTCC	1 cut(s)	353
LpnPI	CCDG	6 cut(s)	21, 44, 267, 282, 450, 513
Lsp1109I	GCAGC	1 cut(s)	185
MaeIII	GTNAC	2 cut(s)	328, 508
MalI	GATC	2 cut(s)	372, 413
MboI	GATC	2 cut(s)	370, 411
MboII	GAAGA	1 cut(s)	380
MflI	RGATCY	2 cut(s)	370, 411
MluCI	AATT	3 cut(s)	40, 402, 450
MlyI	GAGTC	1 cut(s)	336
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	4 cut(s)	7, 48, 104, 189
MroI	TCCGGA	1 cut(s)	499
MseI	TTAA	3 cut(s)	96, 117, 141
MslI	CAYNNNNRTG	1 cut(s)	526
MspCI	CTTAAG	2 cut(s)	116, 140
MspI	CCGG	1 cut(s)	500
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeII	GATC	2 cut(s)	370, 411
NlaIII	CATG	2 cut(s)	346, 516
NlaIV	GGNNCC	2 cut(s)	381, 413
NmuCI	GTSAC	1 cut(s)	328
PaqCI	CACCTGC	1 cut(s)	262
PceI	AGGCCT	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	175
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PpuMI	RGGWCCY	1 cut(s)	379
Psp5II	RGGWCCY	1 cut(s)	379
PspN4I	GGNNCC	2 cut(s)	381, 413
PspPI	GGNCC	2 cut(s)	61, 379
PspPPI	RGGWCCY	1 cut(s)	379
PsuI	RGATCY	2 cut(s)	370, 411
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
RseI	CAYNNNNRTG	1 cut(s)	526
SaqAI	TTAA	3 cut(s)	96, 117, 141
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	2 cut(s)	370, 411
Sau96I	GGNCC	2 cut(s)	61, 379
SchI	GAGTC	1 cut(s)	336
SetI	ASST	9 cut(s)	18, 94, 141, 147, 181, 256, 271, 474, 510
SinI	GGWCC	2 cut(s)	61, 379
SmiMI	CAYNNNNRTG	1 cut(s)	526
SmlI	CTYRAG	2 cut(s)	116, 140
SmoI	CTYRAG	2 cut(s)	116, 140
Sse9I	AATT	3 cut(s)	40, 402, 450
SseBI	AGGCCT	1 cut(s)	114
SsiI	CCGC	1 cut(s)	409
StuI	AGGCCT	1 cut(s)	114
TaaI	ACNGT	4 cut(s)	170, 244, 421, 443
TaqI	TCGA	1 cut(s)	209
TasI	AATT	3 cut(s)	40, 402, 450
Tru1I	TTAA	3 cut(s)	96, 117, 141
Tru9I	TTAA	3 cut(s)	96, 117, 141
TscAI	CASTG	2 cut(s)	175, 448
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	2 cut(s)	401, 510
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	2 cut(s)	175, 448
Vha464I	CTTAAG	2 cut(s)	116, 140
VpaK11BI	GGWCC	2 cut(s)	61, 379
XapI	RAATTY	2 cut(s)	40, 450
XmiI	GTMKAC	2 cut(s)	239, 466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.