Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Reverse (-)

32140891 .. 32141867

Gene Structure 977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0316800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTCTCACCACATCTCCAAAGCCCTAATGGAGGTCGAGGTCAAGCTGAGGCTGCCGGACGCCGCCGCCCACGGCCAGGTCACCGCTCTTCTAGCGCCGTTCCTCCTCGGCACCCACCGCCAGGAGAATCTCTTCTTCGACGGCTCGAAATCCGAGCTCTCGGCGCGGCGGGCCGTGCTCCGGCTACGCTTCTCCGACCGGAGCCCTCTCTGCGCCGTGACGCTGAAGGCGAAGGCGGTGCTGGTCGACGGCGTCAGCCGAGTGGAGGAGGACGAGGAGGAGCTGGACCCGGGGGTGGGGCGGGCCTCCGCCGCCGAGCCGGAGAAGATGATGGCGGCGGAGTCTAGGGTTTTGAGGAGGGTGAGGGAGGAGTTTGGGGTTCTAGGGTTTGTGGGGATGGGAGGGTTTGGGAATGTGAGGGATGTGTATGATTGGAAAGGGTTGAAATTGGAGGTGGATGAGACCAAGTATGAGTTTGGGACTTGTTATGAGATTGAGTGTGAGAGTGCTGATCCTGATGGAGCCAAGGAGAATCTTGAGGAGTTCTTGAAGGAAAATGGGGTGAGGTATTCGTACTCCAAAGTGTCCAAGTTTGCGACTTTTCGAGCTGGGAAGCTGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

207

Amino Acids

23.02

Weight (kDa)

5.55

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CYTH	PF01928	10 - 188	6.5e-19	CYTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	110
AccBSI	CCGCTC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	1 cut(s)	166
AclWI	GGATC	1 cut(s)	506
AcoI	YGGCCR	1 cut(s)	73
AcuI	CTGAAG	1 cut(s)	245
AcyI	GRCGYC	2 cut(s)	60, 252
AfaI	GTAC	1 cut(s)	575
AfiI	CCNNNNNNNGG	7 cut(s)	31, 76, 121, 180, 265, 295, 296
AgsI	TTSAA	2 cut(s)	445, 550
AjnI	CCWGG	2 cut(s)	75, 120
AluBI	AGCT	5 cut(s)	46, 157, 283, 608, 616
AluI	AGCT	5 cut(s)	46, 157, 283, 608, 616
Alw21I	GWGCWC	2 cut(s)	159, 180
Alw26I	GTCTC	2 cut(s)	9, 455
AlwI	GGATC	1 cut(s)	506
Ama87I	CYCGRG	1 cut(s)	289
AoxI	GGCC	3 cut(s)	73, 171, 303
ApeKI	GCWGC	2 cut(s)	52, 616
Asp700I	GAANNNNTTC	1 cut(s)	131
AspLEI	GCGC	3 cut(s)	97, 166, 215
AspS9I	GGNCC	3 cut(s)	171, 286, 303
AsuC2I	CCSGG	2 cut(s)	290, 291
AsuHPI	GGTGA	3 cut(s)	73, 373, 574
AvaI	CYCGRG	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	110
BanII	GRGCYC	2 cut(s)	159, 206
Bbv12I	GWGCWC	2 cut(s)	159, 180
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	39, 603
BccI	CCATC	3 cut(s)	325, 391, 512
BceAI	ACGGC	6 cut(s)	82, 88, 157, 158, 200, 265
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	2 cut(s)	77, 122
BcnI	CCSGG	2 cut(s)	290, 291
BcoDI	GTCTC	2 cut(s)	9, 455
BfaI	CTAG	3 cut(s)	92, 345, 383
BfoI	RGCGCY	1 cut(s)	98
BisI	GCNGC	7 cut(s)	53, 63, 66, 167, 312, 336, 617
BlsI	GCNGC	7 cut(s)	54, 64, 67, 168, 313, 337, 618
Bme1390I	CCNGG	4 cut(s)	77, 122, 290, 291
Bme18I	GGWCC	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	289
BmgT120I	GGNCC	3 cut(s)	171, 286, 303
BmiI	GGNNCC	4 cut(s)	112, 203, 288, 523
BmrFI	CCNGG	4 cut(s)	77, 122, 290, 291
Bpu10I	CCTNAGC	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	557
BpuMI	CCSGG	2 cut(s)	290, 291
BsaHI	GRCGYC	2 cut(s)	60, 252
BsaI	GGTCTC	1 cut(s)	455
BsaJI	CCNNGG	5 cut(s)	70, 106, 289, 290, 525
BsaWI	WCCGGW	1 cut(s)	198
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	7 cut(s)	31, 76, 121, 180, 265, 295, 296
BseBI	CCWGG	2 cut(s)	77, 122
BseDI	CCNNGG	5 cut(s)	70, 106, 289, 290, 525
BseGI	GGATG	3 cut(s)	402, 427, 463
BseLI	CCNNNNNNNGG	7 cut(s)	31, 76, 121, 180, 265, 295, 296
BseMII	CTCAG	1 cut(s)	38
BseRI	GAGGAG	7 cut(s)	95, 281, 290, 293, 370, 383, 554
BseXI	GCAGC	2 cut(s)	39, 603
BseYI	CCCAGC	1 cut(s)	608
Bsh1236I	CGCG	1 cut(s)	166
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	3 cut(s)	75, 173, 305
BshNI	GGYRCC	1 cut(s)	110
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	2 cut(s)	159, 180
BsiHKCI	CYCGRG	1 cut(s)	289
BsiSI	CCGG	5 cut(s)	56, 181, 199, 290, 320
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	7 cut(s)	31, 76, 121, 180, 265, 295, 296
BsmAI	GTCTC	2 cut(s)	9, 455
BsmFI	GGGAC	1 cut(s)	493
BsnI	GGCC	3 cut(s)	75, 173, 305
Bso31I	GGTCTC	1 cut(s)	455
BsoBI	CYCGRG	1 cut(s)	289
Bsp1286I	GDGCHC	3 cut(s)	159, 180, 206
Bsp143I	GATC	1 cut(s)	511
BspANI	GGCC	3 cut(s)	75, 173, 305
BspCNI	CTCAG	1 cut(s)	39
BspFNI	CGCG	1 cut(s)	166
BspLI	GGNNCC	4 cut(s)	112, 203, 288, 523
BspPI	GGATC	1 cut(s)	506
BspQI	GCTCTTC	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	110
BspTNI	GGTCTC	1 cut(s)	455
BsrBI	CCGCTC	1 cut(s)	86
BssECI	CCNNGG	5 cut(s)	70, 106, 289, 290, 525
BssMI	GATC	1 cut(s)	511
BssNI	GRCGYC	2 cut(s)	60, 252
BssT1I	CCWWGG	1 cut(s)	525
Bst2UI	CCWGG	2 cut(s)	77, 122
Bst6I	CTCTTC	2 cut(s)	93, 137
BstACI	GRCGYC	2 cut(s)	60, 252
BstC8I	GCNNGC	2 cut(s)	171, 303
BstDEI	CTNAG	2 cut(s)	47, 621
BstDSI	CCRYGG	1 cut(s)	70
BstEII	GGTNACC	1 cut(s)	79
BstENI	CCTNNNNNAGG	1 cut(s)	29
BstF5I	GGATG	3 cut(s)	402, 427, 463
BstFNI	CGCG	1 cut(s)	166
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	3 cut(s)	97, 166, 215
BstKTI	GATC	1 cut(s)	514
BstMAI	GTCTC	2 cut(s)	9, 455
BstMBI	GATC	1 cut(s)	511
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	8 cut(s)	52, 92, 117, 163, 170, 175, 210, 311
BstNI	CCWGG	2 cut(s)	77, 122
BstPI	GGTNACC	1 cut(s)	79
BstSCI	CCNGG	4 cut(s)	75, 120, 288, 289
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	39, 603
BsuRI	GGCC	3 cut(s)	75, 173, 305
BtgI	CCRYGG	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	402, 427, 463
Cac8I	GCNNGC	2 cut(s)	171, 303
CfoI	GCGC	3 cut(s)	97, 166, 215
Cfr13I	GGNCC	3 cut(s)	171, 286, 303
Cfr9I	CCCGGG	1 cut(s)	289
CseI	GACGC	3 cut(s)	68, 229, 241
Csp6I	GTAC	1 cut(s)	574
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	2 cut(s)	47, 621
DpnI	GATC	1 cut(s)	513
DpnII	GATC	1 cut(s)	511
EaeI	YGGCCR	1 cut(s)	73
Eam1104I	CTCTTC	2 cut(s)	93, 137
EarI	CTCTTC	2 cut(s)	93, 137
EciI	GGCGGA	2 cut(s)	298, 353
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	525
Eco24I	GRGCYC	2 cut(s)	159, 206
Eco31I	GGTCTC	1 cut(s)	455
Eco47I	GGWCC	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	245
Eco88I	CYCGRG	1 cut(s)	289
Eco91I	GGTNACC	1 cut(s)	79
EcoICRI	GAGCTC	1 cut(s)	157
EcoNI	CCTNNNNNAGG	1 cut(s)	29
EcoO65I	GGTNACC	1 cut(s)	79
EcoRII	CCWGG	2 cut(s)	75, 120
EcoT14I	CCWWGG	1 cut(s)	525
EcoT38I	GRGCYC	2 cut(s)	159, 206
ErhI	CCWWGG	1 cut(s)	525
FaiI	YATR	3 cut(s)	429, 471, 489
FaqI	GGGAC	1 cut(s)	493
FauI	CCCGC	2 cut(s)	162, 294
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	7 cut(s)	53, 63, 66, 167, 312, 336, 617
FokI	GGATG	3 cut(s)	409, 434, 470
FriOI	GRGCYC	2 cut(s)	159, 206
Fsp4HI	GCNGC	7 cut(s)	53, 63, 66, 167, 312, 336, 617
FspBI	CTAG	3 cut(s)	92, 345, 383
GlaI	GCGC	3 cut(s)	96, 165, 214
GluI	GCNGC	7 cut(s)	53, 63, 66, 167, 312, 336, 617
GsaI	CCCAGC	1 cut(s)	612
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	3 cut(s)	75, 173, 305
HapII	CCGG	5 cut(s)	56, 181, 199, 290, 320
HgaI	GACGC	3 cut(s)	68, 229, 241
HhaI	GCGC	3 cut(s)	97, 166, 215
Hin1I	GRCGYC	2 cut(s)	60, 252
Hin6I	GCGC	3 cut(s)	95, 164, 213
HinP1I	GCGC	3 cut(s)	95, 164, 213
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	3 cut(s)	127, 341, 532
HpaII	CCGG	5 cut(s)	56, 181, 199, 290, 320
HphI	GGTGA	3 cut(s)	73, 373, 574
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	2 cut(s)	154, 196
Hpy188III	TCNNGA	3 cut(s)	515, 536, 547
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	2 cut(s)	143, 251
HpyAV	CCTTC	3 cut(s)	220, 226, 544
HpyF10VI	GCNNNNNNNGC	8 cut(s)	52, 92, 117, 163, 170, 175, 210, 311
HpyF3I	CTNAG	2 cut(s)	47, 621
Hsp92I	GRCGYC	2 cut(s)	60, 252
HspAI	GCGC	3 cut(s)	95, 164, 213
Kzo9I	GATC	1 cut(s)	511
LguI	GCTCTTC	1 cut(s)	93
LmnI	GCTCC	4 cut(s)	183, 201, 280, 521
Lsp1109I	GCAGC	2 cut(s)	39, 603
MaeI	CTAG	3 cut(s)	92, 345, 383
MaeIII	GTNAC	2 cut(s)	79, 217
MalI	GATC	1 cut(s)	513
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	1 cut(s)	511
MboII	GAAGA	4 cut(s)	80, 124, 127, 337
MhlI	GDGCHC	3 cut(s)	159, 180, 206
MluCI	AATT	1 cut(s)	446
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	219
MroXI	GAANNNNTTC	1 cut(s)	131
MspI	CCGG	5 cut(s)	56, 181, 199, 290, 320
MspR9I	CCNGG	4 cut(s)	77, 122, 290, 291
MvaI	CCWGG	2 cut(s)	77, 122
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	8 cut(s)	52, 92, 117, 163, 170, 175, 210, 311
NciI	CCSGG	2 cut(s)	290, 291
NdeII	GATC	1 cut(s)	511
NlaIV	GGNNCC	4 cut(s)	112, 203, 288, 523
NmeAIII	GCCGAG	4 cut(s)	87, 140, 284, 340
NmuCI	GTSAC	2 cut(s)	79, 217
PciSI	GCTCTTC	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	2 cut(s)	127, 532
PflFI	GACNNNGTC	1 cut(s)	251
PkrI	GCNGC	7 cut(s)	54, 64, 67, 168, 313, 337, 618
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	2 cut(s)	75, 120
PspEI	GGTNACC	1 cut(s)	79
PspFI	CCCAGC	1 cut(s)	608
PspGI	CCWGG	2 cut(s)	75, 120
PspN4I	GGNNCC	4 cut(s)	112, 203, 288, 523
PspPI	GGNCC	3 cut(s)	171, 286, 303
PsyI	GACNNNGTC	1 cut(s)	251
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
SacI	GAGCTC	1 cut(s)	159
SalI	GTCGAC	1 cut(s)	245
SapI	GCTCTTC	1 cut(s)	93
SatI	GCNGC	7 cut(s)	53, 63, 66, 167, 312, 336, 617
Sau3AI	GATC	1 cut(s)	511
Sau96I	GGNCC	3 cut(s)	171, 286, 303
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	4 cut(s)	77, 122, 290, 291
SduI	GDGCHC	3 cut(s)	159, 180, 206
SinI	GGWCC	1 cut(s)	286
SmaI	CCCGGG	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	1 cut(s)	446
SspMI	CTAG	3 cut(s)	92, 345, 383
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	4 cut(s)	75, 120, 288, 289
StyI	CCWWGG	1 cut(s)	525
TaqI	TCGA	5 cut(s)	36, 138, 146, 246, 604
TasI	AATT	1 cut(s)	446
TauI	GCSGC	5 cut(s)	65, 68, 169, 314, 338
TfiI	GAWTC	2 cut(s)	127, 532
TseFI	GTSAC	2 cut(s)	79, 217
TseI	GCWGC	2 cut(s)	52, 616
Tsp45I	GTSAC	2 cut(s)	79, 217
TspMI	CCCGGG	1 cut(s)	289
Tth111I	GACNNNGTC	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	286
XagI	CCTNNNNNAGG	1 cut(s)	29
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25
XmaI	CCCGGG	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	3 cut(s)	92, 345, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.