Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Reverse (-)

7324097 .. 7329129

Gene Structure 5033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000882

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAGAAGTATGAGATTGTGAAAGATATTGGGTCTGGGACTTCTGGGGTAGCAAGGTTGGTAAGAGATAAATGTACCGGAGAGCACTTTGCTGTTAAGTTCATCGAGAGAGGCAACAAGTATGAATTTGCCTTTGTTACACATTTTTTTGTTTTTGGCTTTAACATTTTACTTATACTGACGCCATGTTCTCTATCAATTTTGTATAACCATTGCATAGGTTTCTATTTGTGTTTCTTGGGTCTGATCAATACTTTCGATCAAATACTAGCTTCCTTCTGCCACAGTGATAAAGTATGTCATAGAGATCTTAAGCTTGAAAATGCACTCTTAGATGACAGCACAGCACCTCGGGTGAAAATATGCGATTTTGGATCCTCAAAGTCACTACTACTACATTCTAGGCAAAAATCTACTGCGGGAACTCCGGCTTATATTGCGCCTGAGGTCCTATCTGAAAAACAATATGATGGAGAGATTGCAGATGTTTGGTCTTGTGGAGTCTCCCTATATGTCATGATTGTTGGAGCATATCCCTTTGAAGATCCTAAGGACCCTACGAACCTTAGAAAAACAATTCTGCGGACCCTTACTGTATGCTACTCAATCCCTGATAATGTACGAGTTTCTGTGGAATGTAGAGACTTGCTCGCTAAGATATTTGTGGCAAACCCAGAAAAGAGAATTACAATTTCAGAAATTAAGAACCACTGTTGGTTCTTAAAGAATTTACCTATGGAAATGTGGGAAGGAGGAAGTTGGGAAAGCAATGATGTAAACCATCCATCCCAAAGCATAGAAGAAGTCCAGTCCATAATACAAGAGGCAAGAAAAACTTTAAAGGTCCCAACTGTCAGTAGGCATCTGGTTGGAAGCAGCATGGCTATTGATGATGCTGATGTTGGAGATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

305

Amino Acids

34.17

Weight (kDa)

5.87

Isoelectric Point (pI)

40.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	92 - 240	3.2e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	93 - 236	1.2e-15	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	419, 583
AclWI	GGATC	3 cut(s)	369, 382, 539
AcsI	RAATTY	2 cut(s)	125, 727
AcyI	GRCGYC	1 cut(s)	182
AfaI	GTAC	2 cut(s)	76, 621
AflII	CTTAAG	1 cut(s)	311
AgsI	TTSAA	2 cut(s)	320, 542
AluBI	AGCT	2 cut(s)	272, 316
AluI	AGCT	2 cut(s)	272, 316
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	2 cut(s)	508, 636
AlwI	GGATC	3 cut(s)	369, 382, 539
Ama87I	CYCGRG	1 cut(s)	351
ApeKI	GCWGC	1 cut(s)	876
ApoI	RAATTY	2 cut(s)	125, 727
AspLEI	GCGC	1 cut(s)	442
AspS9I	GGNCC	4 cut(s)	448, 553, 585, 844
AsuHPI	GGTGA	1 cut(s)	367
AvaI	CYCGRG	1 cut(s)	351
AvaII	GGWCC	4 cut(s)	448, 553, 585, 844
AxyI	CCTNAGG	2 cut(s)	444, 549
BamHI	GGATCC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	888
BccI	CCATC	3 cut(s)	464, 789, 793
BclI	TGATCA	1 cut(s)	246
BcoDI	GTCTC	2 cut(s)	508, 636
BfaI	CTAG	2 cut(s)	269, 402
BfrI	CTTAAG	1 cut(s)	311
BglII	AGATCT	1 cut(s)	307
BisI	GCNGC	1 cut(s)	877
BlsI	GCNGC	1 cut(s)	878
Bme18I	GGWCC	4 cut(s)	448, 553, 585, 844
BmeT110I	CYCGRG	1 cut(s)	351
BmgT120I	GGNCC	4 cut(s)	448, 553, 585, 844
BmiI	GGNNCC	4 cut(s)	376, 555, 587, 846
BmsI	GCATC	2 cut(s)	871, 883
BplI	GAGNNNNNCTC	2 cut(s)	633, 665
BsaHI	GRCGYC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	350
BsaWI	WCCGGW	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	808
Bse21I	CCTNAGG	2 cut(s)	444, 549
Bse3DI	GCAATG	2 cut(s)	211, 775
BseDI	CCNNGG	1 cut(s)	350
BseGI	GGATG	2 cut(s)	781, 785
BseMI	GCAATG	2 cut(s)	211, 775
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	1 cut(s)	808
BseXI	GCAGC	1 cut(s)	888
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	351
BsiSI	CCGG	2 cut(s)	78, 428
BslFI	GGGAC	2 cut(s)	52, 830
BsmAI	GTCTC	2 cut(s)	508, 636
BsmFI	GGGAC	2 cut(s)	52, 830
BsoBI	CYCGRG	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	5 cut(s)	246, 259, 307, 374, 544
BspACI	CCGC	2 cut(s)	419, 583
BspCNI	CTCAG	1 cut(s)	436
BspHI	TCATGA	1 cut(s)	516
BspLI	GGNNCC	4 cut(s)	376, 555, 587, 846
BspPI	GGATC	3 cut(s)	369, 382, 539
BspTI	CTTAAG	1 cut(s)	311
BsrDI	GCAATG	2 cut(s)	211, 775
BsrI	ACTGG	1 cut(s)	808
BssECI	CCNNGG	1 cut(s)	350
BssMI	GATC	5 cut(s)	246, 259, 307, 374, 544
BssNI	GRCGYC	1 cut(s)	182
Bst4CI	ACNGT	4 cut(s)	287, 595, 713, 853
BstACI	GRCGYC	1 cut(s)	182
BstAFI	CTTAAG	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	651
BstDEI	CTNAG	5 cut(s)	331, 444, 549, 566, 654
BstF5I	GGATG	2 cut(s)	781, 785
BstHHI	GCGC	1 cut(s)	442
BstKTI	GATC	5 cut(s)	249, 262, 310, 377, 547
BstMAI	GTCTC	2 cut(s)	508, 636
BstMBI	GATC	5 cut(s)	246, 259, 307, 374, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstV1I	GCAGC	1 cut(s)	888
BstX2I	RGATCY	3 cut(s)	307, 374, 544
BstYI	RGATCY	3 cut(s)	307, 374, 544
Bsu36I	CCTNAGG	2 cut(s)	444, 549
BtsCI	GGATG	2 cut(s)	781, 785
BtsIMutI	CAGTG	2 cut(s)	292, 709
Cac8I	GCNNGC	1 cut(s)	651
CciI	TCATGA	1 cut(s)	516
CfoI	GCGC	1 cut(s)	442
Cfr13I	GGNCC	4 cut(s)	448, 553, 585, 844
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	2 cut(s)	75, 620
CviAII	CATG	3 cut(s)	186, 517, 880
CviJI	RGCY	5 cut(s)	159, 272, 316, 431, 884
CviKI_1	RGCY	5 cut(s)	159, 272, 316, 431, 884
CviQI	GTAC	2 cut(s)	75, 620
DdeI	CTNAG	5 cut(s)	331, 444, 549, 566, 654
DpnI	GATC	5 cut(s)	248, 261, 309, 376, 546
DpnII	GATC	5 cut(s)	246, 259, 307, 374, 544
DraI	TTTAAA	1 cut(s)	840
Eco47I	GGWCC	4 cut(s)	448, 553, 585, 844
Eco81I	CCTNAGG	2 cut(s)	444, 549
Eco88I	CYCGRG	1 cut(s)	351
EcoO109I	RGGNCCY	3 cut(s)	448, 553, 844
FaeI	CATG	3 cut(s)	189, 520, 883
FalI	AAGNNNNNCTT	2 cut(s)	820, 852
FaqI	GGGAC	2 cut(s)	52, 830
FatI	CATG	3 cut(s)	185, 516, 879
FauI	CCCGC	1 cut(s)	412
FbaI	TGATCA	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	877
FokI	GGATG	2 cut(s)	768, 772
Fsp4HI	GCNGC	1 cut(s)	877
FspBI	CTAG	2 cut(s)	269, 402
GlaI	GCGC	1 cut(s)	441
GluI	GCNGC	1 cut(s)	877
HapII	CCGG	2 cut(s)	78, 428
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	442
Hin1I	GRCGYC	1 cut(s)	182
Hin1II	CATG	3 cut(s)	189, 520, 883
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	1 cut(s)	501
HpaII	CCGG	2 cut(s)	78, 428
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	1 cut(s)	778
Hpy188I	TCNGA	3 cut(s)	246, 457, 697
Hpy188III	TCNNGA	2 cut(s)	106, 517
Hpy8I	GTNNAC	1 cut(s)	778
HpyAV	CCTTC	2 cut(s)	286, 743
HpyCH4III	ACNGT	4 cut(s)	287, 595, 713, 853
HpyCH4V	TGCA	3 cut(s)	216, 326, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	5 cut(s)	331, 444, 549, 566, 654
Hsp92I	GRCGYC	1 cut(s)	182
Hsp92II	CATG	3 cut(s)	189, 520, 883
HspAI	GCGC	1 cut(s)	440
Ksp22I	TGATCA	1 cut(s)	246
Kzo9I	GATC	5 cut(s)	246, 259, 307, 374, 544
LmnI	GCTCC	1 cut(s)	527
LpnPI	CCDG	9 cut(s)	21, 30, 91, 441, 456, 624, 687, 821, 851
Lsp1109I	GCAGC	1 cut(s)	888
LweI	GCATC	2 cut(s)	871, 883
MaeI	CTAG	2 cut(s)	269, 402
MaeIII	GTNAC	2 cut(s)	136, 384
MalI	GATC	5 cut(s)	248, 261, 309, 376, 546
MboI	GATC	5 cut(s)	246, 259, 307, 374, 544
MboII	GAAGA	2 cut(s)	554, 812
MflI	RGATCY	3 cut(s)	307, 374, 544
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	8 cut(s)	125, 198, 576, 684, 690, 699, 727, 910
MlyI	GAGTC	1 cut(s)	510
MmeI	TCCRAC	3 cut(s)	505, 850, 883
MnlI	CCTC	6 cut(s)	104, 360, 388, 439, 746, 817
MseI	TTAA	7 cut(s)	96, 162, 312, 702, 722, 839, 913
MspCI	CTTAAG	1 cut(s)	311
MspI	CCGG	2 cut(s)	78, 428
MwoI	GCNNNNNNNGC	1 cut(s)	437
NdeII	GATC	5 cut(s)	246, 259, 307, 374, 544
NlaIII	CATG	3 cut(s)	189, 520, 883
NlaIV	GGNNCC	4 cut(s)	376, 555, 587, 846
NmuCI	GTSAC	1 cut(s)	384
PagI	TCATGA	1 cut(s)	516
PkrI	GCNGC	1 cut(s)	878
PleI	GAGTC	1 cut(s)	509
PpsI	GAGTC	1 cut(s)	509
PpuMI	RGGWCCY	3 cut(s)	448, 553, 844
Psp5II	RGGWCCY	3 cut(s)	448, 553, 844
PspN4I	GGNNCC	4 cut(s)	376, 555, 587, 846
PspPI	GGNCC	4 cut(s)	448, 553, 585, 844
PspPPI	RGGWCCY	3 cut(s)	448, 553, 844
PsuI	RGATCY	3 cut(s)	307, 374, 544
RsaI	GTAC	2 cut(s)	76, 621
RsaNI	GTAC	2 cut(s)	75, 620
SaqAI	TTAA	7 cut(s)	96, 162, 312, 702, 722, 839, 913
SatI	GCNGC	1 cut(s)	877
Sau3AI	GATC	5 cut(s)	246, 259, 307, 374, 544
Sau96I	GGNCC	4 cut(s)	448, 553, 585, 844
SchI	GAGTC	1 cut(s)	510
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	9 cut(s)	59, 223, 274, 318, 352, 450, 567, 736, 846
SfaNI	GCATC	2 cut(s)	871, 883
SinI	GGWCC	4 cut(s)	448, 553, 585, 844
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	8 cut(s)	125, 198, 576, 684, 690, 699, 727, 910
SsiI	CCGC	2 cut(s)	419, 583
SspMI	CTAG	2 cut(s)	269, 402
TaaI	ACNGT	4 cut(s)	287, 595, 713, 853
TaqI	TCGA	2 cut(s)	105, 258
TasI	AATT	8 cut(s)	125, 198, 576, 684, 690, 699, 727, 910
Tru1I	TTAA	7 cut(s)	96, 162, 312, 702, 722, 839, 913
Tru9I	TTAA	7 cut(s)	96, 162, 312, 702, 722, 839, 913
TscAI	CASTG	2 cut(s)	292, 716
TseFI	GTSAC	1 cut(s)	384
TseI	GCWGC	1 cut(s)	876
Tsp45I	GTSAC	1 cut(s)	384
TspDTI	ATGAA	2 cut(s)	91, 138
TspRI	CASTG	2 cut(s)	292, 716
Vha464I	CTTAAG	1 cut(s)	311
VpaK11BI	GGWCC	4 cut(s)	448, 553, 585, 844
XapI	RAATTY	2 cut(s)	125, 727
XspI	CTAG	2 cut(s)	269, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.