Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Reverse (-)

60195057 .. 60199044

Gene Structure 3988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G039180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGAGAGGTATGAGATTGTGAAAAATATTGGGTCTGGGACTTCTGGGGTAGCAAGGTTGGTAAGAGATAAATGTACCGGGGAACACTTTGCCGTTAAGTTCATCGAGAGAGGCAACAAGATCAATGAAAATGTACAAGAAGAAATCATGAACCACAGACCCTTGAAGCATCCCAATATTGTTCAATTCAAAGAGGTCCTCCTGACACCAACTCATCTATGCATTGTGATGGAGTATGCTGCTGGAGGAGAACTCTATGAGAGAATATGCAAAGCCGGTAGATTTAGTGAGACTGAGGCAAGGTTTTTCTTCCAGCAATTGATATCAGGAGTTGATTACTGCCATACAATGAAAGTATGTCATAGAGACGTTAAGCTTGAAAATGCACTCTTAGATGACAGCACAGCACCTCGGGTGAAAATATGCGATTTTGGATCCTCAGAGTCACTACTACTACATTCTTGGCAAAAATCTACTGCGGGAACACCGGCTTATATTGCACCTGAGGTCCTATCTGAAAAACAATATGATGGAGCGATTGCAGATGTTTGGTCTTGTGGAGTCTCCCTATATGTCATGATTGTTGGAGCATATCCCTTTGAAGATCGTAAGGACCCTATGAACTTTAGAAAAACAATTCTGCGGACCCTTACTGTATGCTACTCAATCCCTGATAATGTACGAGTTTCTGTGGAATGTAGAGACTTGCTCGCTAAGATATTTGTGGCAAACCCAGAAAAGAGAATTACAATTTCAGAAATTAAGAACCACTGTTGGTTCTTGAAGAATTTACCTATGGAAATGTGGGGAGGAGGAAGTTGGGAAAGCAATGATGTAAACCATCCATCCCAAAGCATTGAAGAAGTCCAGTCTATAATACAAGAGGCAAGAAAACCTTTAAAGGTCCCAGCTGTCGGTAGGCATCTCATTGGAAGCAGTATGGCTATTGATGATGCTGAATTAAACAAGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

324

Amino Acids

36.72

Weight (kDa)

6.38

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 260	6.8e-69	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 256	5.8e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	479, 643
AclWI	GGATC	2 cut(s)	429, 442
AcsI	RAATTY	1 cut(s)	787
AfaI	GTAC	3 cut(s)	76, 135, 681
AfiI	CCNNNNNNNGG	1 cut(s)	914
AgsI	TTSAA	7 cut(s)	166, 185, 190, 380, 602, 784, 860
AluBI	AGCT	2 cut(s)	376, 911
AluI	AGCT	2 cut(s)	376, 911
Alw26I	GTCTC	4 cut(s)	284, 360, 568, 696
AlwI	GGATC	2 cut(s)	429, 442
Ama87I	CYCGRG	1 cut(s)	411
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	787
AspS9I	GGNCC	5 cut(s)	196, 508, 613, 645, 904
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	427
AvaI	CYCGRG	1 cut(s)	411
AvaII	GGWCC	5 cut(s)	196, 508, 613, 645, 904
AxyI	CCTNAGG	1 cut(s)	504
BamHI	GGATCC	1 cut(s)	434
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	4 cut(s)	223, 524, 849, 853
BceAI	ACGGC	1 cut(s)	77
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	4 cut(s)	284, 360, 568, 696
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	79
Bme18I	GGWCC	5 cut(s)	196, 508, 613, 645, 904
BmeT110I	CYCGRG	1 cut(s)	411
BmgT120I	GGNCC	5 cut(s)	196, 508, 613, 645, 904
BmiI	GGNNCC	4 cut(s)	436, 615, 647, 906
BmrFI	CCNGG	1 cut(s)	79
BmsI	GCATC	3 cut(s)	178, 931, 943
BplI	GAGNNNNNCTC	4 cut(s)	237, 269, 693, 725
BpmI	CTGGAG	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	78, 410
Bsc4I	CCNNNNNNNGG	1 cut(s)	914
Bse118I	RCCGGY	2 cut(s)	275, 487
Bse1I	ACTGG	1 cut(s)	868
Bse21I	CCTNAGG	1 cut(s)	504
Bse3DI	GCAATG	1 cut(s)	835
BseDI	CCNNGG	2 cut(s)	78, 410
BseGI	GGATG	3 cut(s)	169, 841, 845
BseLI	CCNNNNNNNGG	1 cut(s)	914
BseMI	GCAATG	1 cut(s)	835
BseMII	CTCAG	3 cut(s)	285, 453, 495
BseNI	ACTGG	1 cut(s)	868
BseRI	GAGGAG	2 cut(s)	261, 825
BseXI	GCAGC	1 cut(s)	226
BseYI	CCCAGC	1 cut(s)	907
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	3 cut(s)	78, 276, 488
BslFI	GGGAC	2 cut(s)	52, 890
BslI	CCNNNNNNNGG	1 cut(s)	914
BsmAI	GTCTC	4 cut(s)	284, 360, 568, 696
BsmBI	CGTCTC	1 cut(s)	360
BsmFI	GGGAC	2 cut(s)	52, 890
BsoBI	CYCGRG	1 cut(s)	411
Bsp1407I	TGTACA	1 cut(s)	133
Bsp143I	GATC	3 cut(s)	120, 434, 604
BspACI	CCGC	2 cut(s)	479, 643
BspCNI	CTCAG	3 cut(s)	286, 452, 496
BspHI	TCATGA	2 cut(s)	147, 576
BspLI	GGNNCC	4 cut(s)	436, 615, 647, 906
BspPI	GGATC	2 cut(s)	429, 442
BsrDI	GCAATG	1 cut(s)	835
BsrFI	RCCGGY	2 cut(s)	275, 487
BsrGI	TGTACA	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	868
BssAI	RCCGGY	2 cut(s)	275, 487
BssECI	CCNNGG	2 cut(s)	78, 410
BssMI	GATC	3 cut(s)	120, 434, 604
Bst4CI	ACNGT	2 cut(s)	655, 773
BstAUI	TGTACA	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	711
BstDEI	CTNAG	5 cut(s)	294, 391, 439, 504, 714
BstF5I	GGATG	3 cut(s)	169, 841, 845
BstKTI	GATC	3 cut(s)	123, 437, 607
BstMAI	GTCTC	4 cut(s)	284, 360, 568, 696
BstMBI	GATC	3 cut(s)	120, 434, 604
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstSCI	CCNGG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	434
BstYI	RGATCY	1 cut(s)	434
Bsu36I	CCTNAGG	1 cut(s)	504
BtsCI	GGATG	3 cut(s)	169, 841, 845
BtsIMutI	CAGTG	1 cut(s)	769
Cac8I	GCNNGC	1 cut(s)	711
CciI	TCATGA	2 cut(s)	147, 576
Cfr10I	RCCGGY	2 cut(s)	275, 487
Cfr13I	GGNCC	5 cut(s)	196, 508, 613, 645, 904
Csp6I	GTAC	3 cut(s)	75, 134, 680
CviAII	CATG	2 cut(s)	148, 577
CviJI	RGCY	5 cut(s)	275, 376, 491, 911, 944
CviKI_1	RGCY	5 cut(s)	275, 376, 491, 911, 944
CviQI	GTAC	3 cut(s)	75, 134, 680
DdeI	CTNAG	5 cut(s)	294, 391, 439, 504, 714
DpnI	GATC	3 cut(s)	122, 436, 606
DpnII	GATC	3 cut(s)	120, 434, 604
DraI	TTTAAA	1 cut(s)	900
Eco32I	GATATC	1 cut(s)	324
Eco47I	GGWCC	5 cut(s)	196, 508, 613, 645, 904
Eco81I	CCTNAGG	1 cut(s)	504
Eco88I	CYCGRG	1 cut(s)	411
EcoO109I	RGGNCCY	4 cut(s)	196, 508, 613, 904
EcoRV	GATATC	1 cut(s)	324
EcoT22I	ATGCAT	1 cut(s)	224
Esp3I	CGTCTC	1 cut(s)	360
FaeI	CATG	2 cut(s)	151, 580
FalI	AAGNNNNNCTT	2 cut(s)	880, 912
FaqI	GGGAC	2 cut(s)	52, 890
FatI	CATG	2 cut(s)	147, 576
FauI	CCCGC	1 cut(s)	472
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	3 cut(s)	156, 828, 832
Fsp4HI	GCNGC	1 cut(s)	240
GluI	GCNGC	1 cut(s)	240
GsaI	CCCAGC	1 cut(s)	911
GsuI	CTGGAG	1 cut(s)	264
HapII	CCGG	3 cut(s)	78, 276, 488
Hin1II	CATG	2 cut(s)	151, 580
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	2 cut(s)	443, 561
HpaII	CCGG	3 cut(s)	78, 276, 488
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	1 cut(s)	838
Hpy188I	TCNGA	3 cut(s)	442, 517, 757
Hpy188III	TCNNGA	6 cut(s)	106, 148, 202, 327, 577, 781
Hpy8I	GTNNAC	1 cut(s)	838
HpyCH4III	ACNGT	2 cut(s)	655, 773
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	5 cut(s)	222, 270, 386, 500, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	5 cut(s)	294, 391, 439, 504, 714
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	2 cut(s)	151, 580
Kzo9I	GATC	3 cut(s)	120, 434, 604
LmnI	GCTCC	2 cut(s)	533, 587
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	3 cut(s)	178, 931, 943
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	444
MalI	GATC	3 cut(s)	122, 436, 606
MboI	GATC	3 cut(s)	120, 434, 604
MboII	GAAGA	5 cut(s)	152, 301, 614, 796, 872
MfeI	CAATTG	1 cut(s)	317
MflI	RGATCY	1 cut(s)	434
MluCI	AATT	8 cut(s)	185, 317, 636, 744, 750, 759, 787, 959
MlyI	GAGTC	2 cut(s)	452, 570
MmeI	TCCRAC	1 cut(s)	565
Mph1103I	ATGCAT	1 cut(s)	224
MseI	TTAA	5 cut(s)	96, 372, 762, 899, 962
MslI	CAYNNNNRTG	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	911
MspI	CCGG	3 cut(s)	78, 276, 488
MspR9I	CCNGG	1 cut(s)	79
MunI	CAATTG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	497
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	3 cut(s)	120, 434, 604
NlaIII	CATG	2 cut(s)	151, 580
NlaIV	GGNNCC	4 cut(s)	436, 615, 647, 906
NmuCI	GTSAC	1 cut(s)	444
NsiI	ATGCAT	1 cut(s)	224
PagI	TCATGA	2 cut(s)	147, 576
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	2 cut(s)	451, 569
PpsI	GAGTC	2 cut(s)	451, 569
PpuMI	RGGWCCY	4 cut(s)	196, 508, 613, 904
Psp5II	RGGWCCY	4 cut(s)	196, 508, 613, 904
PspFI	CCCAGC	1 cut(s)	907
PspN4I	GGNNCC	4 cut(s)	436, 615, 647, 906
PspPI	GGNCC	5 cut(s)	196, 508, 613, 645, 904
PspPPI	RGGWCCY	4 cut(s)	196, 508, 613, 904
PsuI	RGATCY	1 cut(s)	434
PvuII	CAGCTG	1 cut(s)	911
RsaI	GTAC	3 cut(s)	76, 135, 681
RsaNI	GTAC	3 cut(s)	75, 134, 680
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	5 cut(s)	96, 372, 762, 899, 962
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	3 cut(s)	120, 434, 604
Sau96I	GGNCC	5 cut(s)	196, 508, 613, 645, 904
SchI	GAGTC	2 cut(s)	452, 570
ScrFI	CCNGG	1 cut(s)	79
SfaNI	GCATC	3 cut(s)	178, 931, 943
SinI	GGWCC	5 cut(s)	196, 508, 613, 645, 904
SmiMI	CAYNNNNRTG	1 cut(s)	227
Sse9I	AATT	8 cut(s)	185, 317, 636, 744, 750, 759, 787, 959
SsiI	CCGC	2 cut(s)	479, 643
SspI	AATATT	2 cut(s)	28, 178
StyD4I	CCNGG	1 cut(s)	77
TaaI	ACNGT	2 cut(s)	655, 773
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	1 cut(s)	105
TasI	AATT	8 cut(s)	185, 317, 636, 744, 750, 759, 787, 959
TatI	WGTACW	1 cut(s)	133
Tru1I	TTAA	5 cut(s)	96, 372, 762, 899, 962
Tru9I	TTAA	5 cut(s)	96, 372, 762, 899, 962
TscAI	CASTG	1 cut(s)	776
TseFI	GTSAC	1 cut(s)	444
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	444
TspDTI	ATGAA	5 cut(s)	91, 141, 164, 365, 635
TspRI	CASTG	1 cut(s)	776
VpaK11BI	GGWCC	5 cut(s)	196, 508, 613, 645, 904
XapI	RAATTY	1 cut(s)	787
Zsp2I	ATGCAT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.