Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Reverse (-)

7395806 .. 7406737

Gene Structure 10932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000884

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGCCTCGTCTGCAACCAGGATCCAACCCAAATCACAGTTGTGCCTTGATTCTTTTAAGAGAAGAAGAAAGCCAGACTTCTGGCGTCGCTAGACTGGACGGGGTTCGGTCCCAGTACTTAGAGTTGGCGGTCCGGTCCTGGTCCTTGACTTTTGCTGACTTCGTGGACCGAAAAACCCGAACATGTAGATCTATGGAGAAGTATGAGATTGTGAAAGATATTGGGTCTGGGGCTTCTGGGGTAGCAAGGTTGGTAAGAGATAAATGTACCGGAGAACACTTTGCTGTTAAGTTCATCGAGAGAGGCAACAAGGGAAAAAAAAGTATGAATTTGCCTTTGTTACACATTTTTTTTGTTTTAGGCTTTAACAAATTACTTATACTGACGCCATGTTCTCTATCAATTTTGAAAAACCATTGCATAGGTTTCTATTTGTGTTTCTTGGGTCTGATCAATACTTTCGATCAAAAATTAGCTTCCTTCTGCCACAATGAAAAAGTATGTCATAGAGACCTTAAGCTTGAAAATGCACTCTTAGATGACAACACAGCACCTCGGGTGAAAATATGCGATTTTGGATCCTCAAAGTCACTACTACTACATTCTCGGCAAAAATCTACTGCGGGAACTCCGGCTTATATTGCACCTGAGGTCCTATCTGAAAAACAATATGATGGAGAGATTGCAGATGTTTGGTCTTGTGGAGTCTCCCTATATGTCATGATTGTTGGAGCATATCCCTTTGAAGATCCTAAGGACCCTATGAACTTTAGAAGAACAATTCTGCGGACTCTTACTGCATGCTACTCAATCCCTGATAATGTACGAGTTTCTGTGGAATGTAGACACTTGCTCTCTAAGATATTTGTGGCAAACCCAGAAAAGAGAATTACAATTTCACAAATTAAGAACCACTGTTGGTTCTTGAAGAATTTACCTATGGAAATGTGGGAAGGAGGAAGTTGGGAAAGCAATGATGTAAACCATCCATCCCAAAGCATTGAAGAAGTCCAGTCTATAATACAAGAGGCAAGAAAACCTTTAAAGGTCCCAACTGTCAGTAGGCATCTCATTGGAAGCAGCATGGCTATTGATGATGCTGAATTAAACAAGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

373

Amino Acids

42.02

Weight (kDa)

8.61

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	160 - 308	1.1e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	161 - 304	7.1e-16	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	844
AciI	CCGC	3 cut(s)	128, 623, 787
AclWI	GGATC	5 cut(s)	15, 28, 573, 586, 743
AcsI	RAATTY	2 cut(s)	328, 931
AcyI	GRCGYC	2 cut(s)	84, 386
AfaI	GTAC	3 cut(s)	116, 268, 825
AflII	CTTAAG	1 cut(s)	515
AflIII	ACRYGT	1 cut(s)	182
AgsI	TTSAA	5 cut(s)	409, 524, 746, 928, 1004
AjnI	CCWGG	2 cut(s)	16, 137
AleI	CACNNNNGTG	1 cut(s)	39
AluBI	AGCT	2 cut(s)	476, 520
AluI	AGCT	2 cut(s)	476, 520
Alw26I	GTCTC	2 cut(s)	504, 712
AlwI	GGATC	5 cut(s)	15, 28, 573, 586, 743
Ama87I	CYCGRG	1 cut(s)	555
ApeKI	GCWGC	1 cut(s)	1080
ApoI	RAATTY	2 cut(s)	328, 931
AspS9I	GGNCC	8 cut(s)	108, 130, 135, 141, 166, 652, 757, 1048
AsuHPI	GGTGA	1 cut(s)	571
AvaI	CYCGRG	1 cut(s)	555
AvaII	GGWCC	8 cut(s)	108, 130, 135, 141, 166, 652, 757, 1048
AxyI	CCTNAGG	2 cut(s)	648, 753
BamHI	GGATCC	2 cut(s)	20, 578
BbvI	GCAGC	1 cut(s)	1092
BccI	CCATC	3 cut(s)	668, 993, 997
BciT130I	CCWGG	2 cut(s)	18, 139
BclI	TGATCA	1 cut(s)	450
BcoDI	GTCTC	2 cut(s)	504, 712
BfaI	CTAG	1 cut(s)	90
BfrI	CTTAAG	1 cut(s)	515
BglII	AGATCT	1 cut(s)	188
BisI	GCNGC	1 cut(s)	1081
BlsI	GCNGC	1 cut(s)	1082
BmcAI	AGTACT	1 cut(s)	116
Bme1390I	CCNGG	2 cut(s)	18, 139
Bme18I	GGWCC	8 cut(s)	108, 130, 135, 141, 166, 652, 757, 1048
BmeT110I	CYCGRG	1 cut(s)	555
BmgT120I	GGNCC	8 cut(s)	108, 130, 135, 141, 166, 652, 757, 1048
BmiI	GGNNCC	5 cut(s)	22, 110, 580, 759, 1050
BmrFI	CCNGG	2 cut(s)	18, 139
BmrI	ACTGGG	1 cut(s)	106
BmsI	GCATC	2 cut(s)	1075, 1087
BmuI	ACTGGG	1 cut(s)	106
BsaHI	GRCGYC	2 cut(s)	84, 386
BsaI	GGTCTC	1 cut(s)	504
BsaJI	CCNNGG	1 cut(s)	554
BsaWI	WCCGGW	2 cut(s)	132, 269
Bse1I	ACTGG	3 cut(s)	99, 112, 1012
Bse21I	CCTNAGG	2 cut(s)	648, 753
Bse3DI	GCAATG	2 cut(s)	415, 979
BseBI	CCWGG	2 cut(s)	18, 139
BseDI	CCNNGG	1 cut(s)	554
BseGI	GGATG	2 cut(s)	985, 989
BseMI	GCAATG	2 cut(s)	415, 979
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	3 cut(s)	99, 112, 1012
BseXI	GCAGC	1 cut(s)	1092
BsiHKCI	CYCGRG	1 cut(s)	555
BsiSI	CCGG	3 cut(s)	133, 270, 632
BslFI	GGGAC	2 cut(s)	94, 1034
BsmAI	GTCTC	2 cut(s)	504, 712
BsmFI	GGGAC	2 cut(s)	94, 1034
Bso31I	GGTCTC	1 cut(s)	504
BsoBI	CYCGRG	1 cut(s)	555
Bsp143I	GATC	6 cut(s)	20, 188, 450, 463, 578, 748
BspACI	CCGC	3 cut(s)	128, 623, 787
BspCNI	CTCAG	1 cut(s)	640
BspHI	TCATGA	1 cut(s)	720
BspLI	GGNNCC	5 cut(s)	22, 110, 580, 759, 1050
BspPI	GGATC	5 cut(s)	15, 28, 573, 586, 743
BspTI	CTTAAG	1 cut(s)	515
BspTNI	GGTCTC	1 cut(s)	504
BsrDI	GCAATG	2 cut(s)	415, 979
BsrI	ACTGG	3 cut(s)	99, 112, 1012
BssECI	CCNNGG	1 cut(s)	554
BssMI	GATC	6 cut(s)	20, 188, 450, 463, 578, 748
BssNI	GRCGYC	2 cut(s)	84, 386
Bst2UI	CCWGG	2 cut(s)	18, 139
Bst4CI	ACNGT	3 cut(s)	38, 917, 1057
BstACI	GRCGYC	2 cut(s)	84, 386
BstAFI	CTTAAG	1 cut(s)	515
BstC8I	GCNNGC	1 cut(s)	802
BstDEI	CTNAG	5 cut(s)	118, 535, 648, 753, 858
BstF5I	GGATG	2 cut(s)	985, 989
BstKTI	GATC	6 cut(s)	23, 191, 453, 466, 581, 751
BstMAI	GTCTC	2 cut(s)	504, 712
BstMBI	GATC	6 cut(s)	20, 188, 450, 463, 578, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 641
BstNI	CCWGG	2 cut(s)	18, 139
BstNSI	RCATGY	2 cut(s)	186, 804
BstSCI	CCNGG	2 cut(s)	16, 137
BstV1I	GCAGC	1 cut(s)	1092
BstX2I	RGATCY	4 cut(s)	20, 188, 578, 748
BstXI	CCANNNNNNTGG	1 cut(s)	80
BstYI	RGATCY	4 cut(s)	20, 188, 578, 748
Bsu36I	CCTNAGG	2 cut(s)	648, 753
BtsCI	GGATG	2 cut(s)	985, 989
BtsIMutI	CAGTG	1 cut(s)	913
Cac8I	GCNNGC	1 cut(s)	802
CciI	TCATGA	1 cut(s)	720
Cfr13I	GGNCC	8 cut(s)	108, 130, 135, 141, 166, 652, 757, 1048
CpoI	CGGWCCG	1 cut(s)	130
CseI	GACGC	2 cut(s)	73, 394
Csp6I	GTAC	3 cut(s)	115, 267, 824
CspI	CGGWCCG	1 cut(s)	130
CviAII	CATG	5 cut(s)	183, 390, 721, 801, 1084
CviJI	RGCY	7 cut(s)	72, 233, 363, 476, 520, 635, 1088
CviKI_1	RGCY	7 cut(s)	72, 233, 363, 476, 520, 635, 1088
CviQI	GTAC	3 cut(s)	115, 267, 824
DdeI	CTNAG	5 cut(s)	118, 535, 648, 753, 858
DpnI	GATC	6 cut(s)	22, 190, 452, 465, 580, 750
DpnII	GATC	6 cut(s)	20, 188, 450, 463, 578, 748
DraI	TTTAAA	1 cut(s)	1044
Eco31I	GGTCTC	1 cut(s)	504
Eco47I	GGWCC	8 cut(s)	108, 130, 135, 141, 166, 652, 757, 1048
Eco81I	CCTNAGG	2 cut(s)	648, 753
Eco88I	CYCGRG	1 cut(s)	555
EcoO109I	RGGNCCY	3 cut(s)	652, 757, 1048
EcoRII	CCWGG	2 cut(s)	16, 137
FaeI	CATG	5 cut(s)	186, 393, 724, 804, 1087
FalI	AAGNNNNNCTT	4 cut(s)	61, 93, 1024, 1056
FaqI	GGGAC	2 cut(s)	94, 1034
FatI	CATG	5 cut(s)	182, 389, 720, 800, 1083
FauI	CCCGC	1 cut(s)	616
FbaI	TGATCA	1 cut(s)	450
FblI	GTMKAC	1 cut(s)	844
Fnu4HI	GCNGC	1 cut(s)	1081
FokI	GGATG	2 cut(s)	972, 976
Fsp4HI	GCNGC	1 cut(s)	1081
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	1 cut(s)	1081
HapII	CCGG	3 cut(s)	133, 270, 632
HgaI	GACGC	2 cut(s)	73, 394
Hin1I	GRCGYC	2 cut(s)	84, 386
Hin1II	CATG	5 cut(s)	186, 393, 724, 804, 1087
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	3 cut(s)	49, 705, 790
HpaII	CCGG	3 cut(s)	133, 270, 632
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	3 cut(s)	166, 845, 982
Hpy188I	TCNGA	2 cut(s)	450, 661
Hpy188III	TCNNGA	3 cut(s)	298, 721, 925
Hpy8I	GTNNAC	3 cut(s)	166, 845, 982
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	490, 947
HpyCH4III	ACNGT	3 cut(s)	38, 917, 1057
HpyCH4V	TGCA	6 cut(s)	13, 420, 530, 644, 686, 800
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 641
HpyF3I	CTNAG	5 cut(s)	118, 535, 648, 753, 858
Hsp92I	GRCGYC	2 cut(s)	84, 386
Hsp92II	CATG	5 cut(s)	186, 393, 724, 804, 1087
Ksp22I	TGATCA	1 cut(s)	450
Kzo9I	GATC	6 cut(s)	20, 188, 450, 463, 578, 748
LmnI	GCTCC	1 cut(s)	731
Lsp1109I	GCAGC	1 cut(s)	1092
LweI	GCATC	2 cut(s)	1075, 1087
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	339, 588
MalI	GATC	6 cut(s)	22, 190, 452, 465, 580, 750
MboI	GATC	6 cut(s)	20, 188, 450, 463, 578, 748
MboII	GAAGA	6 cut(s)	74, 77, 758, 786, 940, 1016
MflI	RGATCY	4 cut(s)	20, 188, 578, 748
MlyI	GAGTC	2 cut(s)	714, 784
MmeI	TCCRAC	2 cut(s)	48, 709
MnlI	CCTC	7 cut(s)	15, 296, 564, 592, 643, 950, 1021
MseI	TTAA	7 cut(s)	56, 288, 366, 516, 906, 1043, 1106
MslI	CAYNNNNRTG	1 cut(s)	39
MspCI	CTTAAG	1 cut(s)	515
MspI	CCGG	3 cut(s)	133, 270, 632
MspR9I	CCNGG	2 cut(s)	18, 139
MvaI	CCWGG	2 cut(s)	18, 139
MwoI	GCNNNNNNNGC	2 cut(s)	10, 641
NdeII	GATC	6 cut(s)	20, 188, 450, 463, 578, 748
NlaIII	CATG	5 cut(s)	186, 393, 724, 804, 1087
NlaIV	GGNNCC	5 cut(s)	22, 110, 580, 759, 1050
NmeAIII	GCCGAG	1 cut(s)	586
NmuCI	GTSAC	1 cut(s)	588
NspI	RCATGY	2 cut(s)	186, 804
OliI	CACNNNNGTG	1 cut(s)	39
PaeI	GCATGC	1 cut(s)	804
PagI	TCATGA	1 cut(s)	720
PciI	ACATGT	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	1082
PleI	GAGTC	2 cut(s)	713, 784
PpsI	GAGTC	2 cut(s)	713, 784
PpuMI	RGGWCCY	3 cut(s)	652, 757, 1048
PscI	ACATGT	1 cut(s)	182
Psp5II	RGGWCCY	3 cut(s)	652, 757, 1048
Psp6I	CCWGG	2 cut(s)	16, 137
PspGI	CCWGG	2 cut(s)	16, 137
PspN4I	GGNNCC	5 cut(s)	22, 110, 580, 759, 1050
PspPI	GGNCC	8 cut(s)	108, 130, 135, 141, 166, 652, 757, 1048
PspPPI	RGGWCCY	3 cut(s)	652, 757, 1048
PsuI	RGATCY	4 cut(s)	20, 188, 578, 748
RsaI	GTAC	3 cut(s)	116, 268, 825
RsaNI	GTAC	3 cut(s)	115, 267, 824
RseI	CAYNNNNRTG	1 cut(s)	39
Rsr2I	CGGWCCG	1 cut(s)	130
RsrII	CGGWCCG	1 cut(s)	130
SaqAI	TTAA	7 cut(s)	56, 288, 366, 516, 906, 1043, 1106
SatI	GCNGC	1 cut(s)	1081
Sau3AI	GATC	6 cut(s)	20, 188, 450, 463, 578, 748
Sau96I	GGNCC	8 cut(s)	108, 130, 135, 141, 166, 652, 757, 1048
ScaI	AGTACT	1 cut(s)	116
SchI	GAGTC	2 cut(s)	714, 784
ScrFI	CCNGG	2 cut(s)	18, 139
SfaNI	GCATC	2 cut(s)	1075, 1087
SinI	GGWCC	8 cut(s)	108, 130, 135, 141, 166, 652, 757, 1048
SmiMI	CAYNNNNRTG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
SphI	GCATGC	1 cut(s)	804
SsiI	CCGC	3 cut(s)	128, 623, 787
SspMI	CTAG	1 cut(s)	90
StyD4I	CCNGG	2 cut(s)	16, 137
TaaI	ACNGT	3 cut(s)	38, 917, 1057
TaqI	TCGA	2 cut(s)	297, 462
TaqII	GACCGA	2 cut(s)	96, 183
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	7 cut(s)	56, 288, 366, 516, 906, 1043, 1106
Tru9I	TTAA	7 cut(s)	56, 288, 366, 516, 906, 1043, 1106
TscAI	CASTG	1 cut(s)	920
TseFI	GTSAC	1 cut(s)	588
TseI	GCWGC	1 cut(s)	1080
Tsp45I	GTSAC	1 cut(s)	588
TspDTI	ATGAA	4 cut(s)	283, 341, 507, 779
TspRI	CASTG	1 cut(s)	920
Vha464I	CTTAAG	1 cut(s)	515
VpaK11BI	GGWCC	8 cut(s)	108, 130, 135, 141, 166, 652, 757, 1048
XapI	RAATTY	2 cut(s)	328, 931
XceI	RCATGY	2 cut(s)	186, 804
XmiI	GTMKAC	1 cut(s)	844
XspI	CTAG	1 cut(s)	90
ZrmI	AGTACT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.