Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Forward (+)

26938724 .. 26940996

Gene Structure 2273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g36722.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAGAGGTATGAGATTCTGAAAGATATTGGGTCTGGGACTTCTGGGGTAGCAAGGTTGGTAAGAGATATATATACCGGAGAACACTTTGCTGTTAAGTTCATCGAGAGAGGCAACAAGGGCTTTGGTAATCTTCCCATTTATGTGTTGTTGCAGATAGATGAAAATGTACAAGAGGAAATCATGAACCACAGATCCTTGAAGCATCTCAATGTTGTTCAATTCAAAGAGGGTTGCTCAAAATATTTGGATGTGGCGTGGCGGAGCCCGGATAAGGTGCAAAGCTTAATCGGCCCAGAAGGCCGGCTGACTTGGGATCGTGGTGGCGGTGTCTACTGGTTTGGGGATATTGGAACCGATATGGGCACAAATCCAATCTTGGATAGGACATGGCGTGATCTGGTCTTGATTTGGCGAGGTTGGGGTGGCCGAACAGGGCTGGTTGTGGTCCGGCGACCCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

155

Amino Acids

17.66

Weight (kDa)

8.76

Isoelectric Point (pI)

27.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 80	7.4e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	333
AciI	CCGC	2 cut(s)	262, 327
AclWI	GGATC	2 cut(s)	189, 324
AcoI	YGGCCR	1 cut(s)	427
AfaI	GTAC	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	3 cut(s)	202, 221, 226
AjnI	CCWGG	1 cut(s)	458
AloI	GAACNNNNNNTCC	2 cut(s)	179, 211
AluBI	AGCT	1 cut(s)	285
AluI	AGCT	1 cut(s)	285
AlwI	GGATC	2 cut(s)	189, 324
AoxI	GGCC	3 cut(s)	292, 301, 427
AspS9I	GGNCC	2 cut(s)	293, 448
AsuC2I	CCSGG	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	448
BaeGI	GKGCMC	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	269
BciT130I	CCWGG	1 cut(s)	460
BcnI	CCSGG	1 cut(s)	269
BglI	GCCNNNNNGGC	1 cut(s)	300
Bme1390I	CCNGG	2 cut(s)	269, 460
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	2 cut(s)	293, 448
BmiI	GGNNCC	2 cut(s)	266, 355
BmrFI	CCNGG	2 cut(s)	269, 460
BmsI	GCATC	1 cut(s)	214
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
BpuMI	CCSGG	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	458
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse118I	RCCGGY	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	460
BseDI	CCNNGG	1 cut(s)	458
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseNI	ACTGG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	368
BshFI	GGCC	3 cut(s)	294, 303, 429
BsiSI	CCGG	4 cut(s)	78, 269, 304, 451
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	3 cut(s)	294, 303, 429
Bsp1286I	GDGCHC	2 cut(s)	269, 368
Bsp1407I	TGTACA	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	194, 316, 397
BspACI	CCGC	2 cut(s)	262, 327
BspANI	GGCC	3 cut(s)	294, 303, 429
BspHI	TCATGA	1 cut(s)	183
BspLI	GGNNCC	2 cut(s)	266, 355
BspPI	GGATC	2 cut(s)	189, 324
BsrFI	RCCGGY	1 cut(s)	303
BsrGI	TGTACA	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	341
BssAI	RCCGGY	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	458
BssMI	GATC	3 cut(s)	194, 316, 397
Bst2UI	CCWGG	1 cut(s)	460
BstAUI	TGTACA	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	3 cut(s)	197, 319, 400
BstMBI	GATC	3 cut(s)	194, 316, 397
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 291, 300
BstNI	CCWGG	1 cut(s)	460
BstSCI	CCNGG	2 cut(s)	267, 458
BstSLI	GKGCMC	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BsuRI	GGCC	3 cut(s)	294, 303, 429
BtsCI	GGATG	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	305
CciI	TCATGA	1 cut(s)	183
Cfr10I	RCCGGY	1 cut(s)	303
Cfr13I	GGNCC	2 cut(s)	293, 448
Csp6I	GTAC	1 cut(s)	170
CviAII	CATG	2 cut(s)	184, 390
CviJI	RGCY	8 cut(s)	123, 267, 285, 294, 303, 307, 429, 439
CviKI_1	RGCY	8 cut(s)	123, 267, 285, 294, 303, 307, 429, 439
CviQI	GTAC	1 cut(s)	170
DpnI	GATC	3 cut(s)	196, 318, 399
DpnII	GATC	3 cut(s)	194, 316, 397
EaeI	YGGCCR	1 cut(s)	427
EciI	GGCGGA	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	448
EcoRII	CCWGG	1 cut(s)	458
EcoT38I	GRGCYC	1 cut(s)	269
FaeI	CATG	2 cut(s)	187, 393
FaiI	YATR	8 cut(s)	12, 71, 73, 75, 144, 185, 362, 391
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	2 cut(s)	183, 389
FblI	GTMKAC	1 cut(s)	333
FokI	GGATG	1 cut(s)	263
FriOI	GRGCYC	1 cut(s)	269
HaeIII	GGCC	3 cut(s)	294, 303, 429
HapII	CCGG	4 cut(s)	78, 269, 304, 451
Hin1II	CATG	2 cut(s)	187, 393
HindIII	AAGCTT	1 cut(s)	283
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	4 cut(s)	78, 269, 304, 451
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	3 cut(s)	106, 184, 406
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	1 cut(s)	293
HpyCH4V	TGCA	2 cut(s)	154, 280
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 291, 300
Hsp92II	CATG	2 cut(s)	187, 393
KroI	GCCGGC	1 cut(s)	303
KroNI	GCCGGC	1 cut(s)	305
Kzo9I	GATC	3 cut(s)	194, 316, 397
LmnI	GCTCC	1 cut(s)	264
LweI	GCATC	1 cut(s)	214
MalI	GATC	3 cut(s)	196, 318, 399
MboI	GATC	3 cut(s)	194, 316, 397
MboII	GAAGA	1 cut(s)	125
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	2 cut(s)	269, 368
MluCI	AATT	1 cut(s)	221
MnlI	CCTC	4 cut(s)	104, 169, 223, 410
MroNI	GCCGGC	1 cut(s)	303
MseI	TTAA	2 cut(s)	96, 287
MslI	CAYNNNNRTG	2 cut(s)	143, 210
MspI	CCGG	4 cut(s)	78, 269, 304, 451
MspR9I	CCNGG	2 cut(s)	269, 460
MvaI	CCWGG	1 cut(s)	460
MwoI	GCNNNNNNNGC	3 cut(s)	120, 291, 300
NaeI	GCCGGC	1 cut(s)	305
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	3 cut(s)	194, 316, 397
NgoMIV	GCCGGC	1 cut(s)	303
NlaIII	CATG	2 cut(s)	187, 393
NlaIV	GGNNCC	2 cut(s)	266, 355
PagI	TCATGA	1 cut(s)	183
PdiI	GCCGGC	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	458
PspGI	CCWGG	1 cut(s)	458
PspN4I	GGNNCC	2 cut(s)	266, 355
PspPI	GGNCC	2 cut(s)	293, 448
PsuI	RGATCY	1 cut(s)	194
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
RseI	CAYNNNNRTG	2 cut(s)	143, 210
SaqAI	TTAA	2 cut(s)	96, 287
Sau3AI	GATC	3 cut(s)	194, 316, 397
Sau96I	GGNCC	2 cut(s)	293, 448
ScrFI	CCNGG	2 cut(s)	269, 460
SduI	GDGCHC	2 cut(s)	269, 368
SetI	ASST	5 cut(s)	11, 59, 279, 287, 421
SfaNI	GCATC	1 cut(s)	214
SfiI	GGCCNNNNNGGCC	1 cut(s)	300
SinI	GGWCC	1 cut(s)	448
SmiMI	CAYNNNNRTG	2 cut(s)	143, 210
Sse9I	AATT	1 cut(s)	221
SsiI	CCGC	2 cut(s)	262, 327
SspI	AATATT	1 cut(s)	245
StyD4I	CCNGG	2 cut(s)	267, 458
TaqI	TCGA	1 cut(s)	105
TasI	AATT	1 cut(s)	221
TatI	WGTACW	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	2 cut(s)	96, 287
Tru9I	TTAA	2 cut(s)	96, 287
TspDTI	ATGAA	3 cut(s)	91, 177, 200
VpaK11BI	GGWCC	1 cut(s)	448
XmiI	GTMKAC	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.