Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004165.1

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Forward (+)

123190 .. 123515

Gene Structure 326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004165.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

atggagaagtatgagattgtgaaagatattggttctggggcttctggggtagcaaggttggtaagagataaatgtaccggagagcactttgctgttaagttcatcgagagaggcaacaaggttattcccatttctgtggtgttgcagatcaatgaaaatgtacaaggggaaatcatgaaccacagatccttgaagcatcccaatgttgttcaattcaaagaggttagcaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

77

Amino Acids

8.63

Weight (kDa)

8.89

Isoelectric Point (pI)

19.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	180
AfaI	GTAC	2 cut(s)	76, 162
AgsI	TTSAA	3 cut(s)	193, 212, 217
AloI	GAACNNNNNNTCC	2 cut(s)	170, 202
Alw21I	GWGCWC	1 cut(s)	87
AlwI	GGATC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	87
BmsI	GCATC	1 cut(s)	205
BsaWI	WCCGGW	1 cut(s)	77
BseGI	GGATG	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	147, 185
BspHI	TCATGA	1 cut(s)	174
BspPI	GGATC	1 cut(s)	180
BsrGI	TGTACA	1 cut(s)	160
BssMI	GATC	2 cut(s)	147, 185
BstAUI	TGTACA	1 cut(s)	160
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	2 cut(s)	150, 188
BstMBI	GATC	2 cut(s)	147, 185
BstX2I	RGATCY	1 cut(s)	185
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	196
CciI	TCATGA	1 cut(s)	174
Csp6I	GTAC	2 cut(s)	75, 161
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	1 cut(s)	41
CviKI_1	RGCY	1 cut(s)	41
CviQI	GTAC	2 cut(s)	75, 161
DpnI	GATC	2 cut(s)	149, 187
DpnII	GATC	2 cut(s)	147, 185
FaeI	CATG	1 cut(s)	178
FaiI	YATR	2 cut(s)	12, 176
FatI	CATG	1 cut(s)	174
FokI	GGATG	1 cut(s)	183
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	1 cut(s)	178
HpaII	CCGG	1 cut(s)	78
Hpy188III	TCNNGA	2 cut(s)	106, 175
HpyCH4V	TGCA	1 cut(s)	145
Hsp92II	CATG	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	147, 185
LpnPI	CCDG	3 cut(s)	21, 30, 91
LweI	GCATC	1 cut(s)	205
MalI	GATC	2 cut(s)	149, 187
MboI	GATC	2 cut(s)	147, 185
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	2 cut(s)	212, 229
MnlI	CCTC	2 cut(s)	104, 214
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	2 cut(s)	134, 201
MspI	CCGG	1 cut(s)	78
NdeII	GATC	2 cut(s)	147, 185
NlaIII	CATG	1 cut(s)	178
PagI	TCATGA	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	185
RsaI	GTAC	2 cut(s)	76, 162
RsaNI	GTAC	2 cut(s)	75, 161
RseI	CAYNNNNRTG	2 cut(s)	134, 201
SaqAI	TTAA	1 cut(s)	96
Sau3AI	GATC	2 cut(s)	147, 185
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	3 cut(s)	59, 123, 225
SfaNI	GCATC	1 cut(s)	205
SgeI	CNNG	9 cut(s)	48, 57, 66, 90, 118, 130, 176, 187, 202
SmiMI	CAYNNNNRTG	2 cut(s)	134, 201
Sse9I	AATT	2 cut(s)	212, 229
TaqI	TCGA	1 cut(s)	105
TasI	AATT	2 cut(s)	212, 229
TatI	WGTACW	1 cut(s)	160
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TspDTI	ATGAA	3 cut(s)	91, 168, 191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.