Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Reverse (-)

31324386 .. 31341229

Gene Structure 16844 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG191100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCGATGTTGTTTGTTCATTGAGGAGGGAAATGAGGAGGAGGAGCTGGAGCTGAATCTGGGGCTGTCTTTGGGAGGAAGATTCGGAGTGGACAAGAGGGAGAAAAATGGCGGCACAACACCTCGTGTGAAAATATGCTATTTCAGAGACTCAATGAGAATAACAATCCCTGAAATTAAGAGCCATCCTTGGTTTGTAAAGAATTTACCTATGGAAATGATGGAAGGAGGAAGTTGGGAAAGCAATGAGGTGAACAATCCATCCCAAAGTGTTGAAGAAGTTCAGTCTATAATACAACAGGCAAGAAGACCTTTAAAGATCCCAACTGTCAGTAGGCATCTCGTTGGAAGCAGCATGGCTATTGATGATGCTTATGTTGGAGGTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

129

Amino Acids

14.52

Weight (kDa)

5.25

Isoelectric Point (pI)

51.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EAR	PF07897	11 - 36	2.5e-12	Ethylene-responsive binding factor-associated repression

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	202
AdeI	CACNNNGTG	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	275
AloI	GAACNNNNNNTCC	2 cut(s)	245, 277
AluBI	AGCT	2 cut(s)	46, 52
AluI	AGCT	2 cut(s)	46, 52
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	313
ApeKI	GCWGC	1 cut(s)	351
ApoI	RAATTY	1 cut(s)	202
Asp700I	GAANNNNTTC	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	262
BauI	CACGAG	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	363
BccI	CCATC	3 cut(s)	192, 214, 268
BcoDI	GTCTC	1 cut(s)	141
BisI	GCNGC	2 cut(s)	112, 352
BlsI	GCNGC	2 cut(s)	113, 353
BmsI	GCATC	2 cut(s)	346, 358
BpiI	GAAGAC	1 cut(s)	313
BpmI	CTGGAG	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	188
Bse3DI	GCAATG	1 cut(s)	250
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	2 cut(s)	184, 260
BseMI	GCAATG	1 cut(s)	250
BseRI	GAGGAG	4 cut(s)	38, 50, 53, 56
BseXI	GCAGC	1 cut(s)	363
BsmAI	GTCTC	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	250
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	1 cut(s)	318
BssSI	CACGAG	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	188
Bst2BI	CACGAG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	328
BstF5I	GGATG	2 cut(s)	184, 260
BstKTI	GATC	1 cut(s)	321
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	363
BstV2I	GAAGAC	1 cut(s)	313
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
BtgZI	GCGATG	1 cut(s)	19
BtsCI	GGATG	2 cut(s)	184, 260
CviAII	CATG	1 cut(s)	355
CviJI	RGCY	5 cut(s)	46, 52, 64, 183, 359
CviKI_1	RGCY	5 cut(s)	46, 52, 64, 183, 359
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
DraI	TTTAAA	1 cut(s)	315
DraIII	CACNNNGTG	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	1 cut(s)	358
FaiI	YATR	5 cut(s)	136, 212, 290, 356, 375
FalI	AAGNNNNNCTT	2 cut(s)	295, 327
FatI	CATG	1 cut(s)	354
Fnu4HI	GCNGC	2 cut(s)	112, 352
FokI	GGATG	2 cut(s)	171, 247
Fsp4HI	GCNGC	2 cut(s)	112, 352
GluI	GCNGC	2 cut(s)	112, 352
GsuI	CTGGAG	1 cut(s)	68
Hin1II	CATG	1 cut(s)	358
HinfI	GANTC	3 cut(s)	55, 81, 149
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	2 cut(s)	91, 253
Hpy188I	TCNGA	2 cut(s)	86, 146
Hpy8I	GTNNAC	2 cut(s)	91, 253
HpyAV	CCTTC	1 cut(s)	218
HpyCH4III	ACNGT	1 cut(s)	328
Hsp92II	CATG	1 cut(s)	358
Kzo9I	GATC	1 cut(s)	318
LmnI	GCTCC	2 cut(s)	43, 49
LpnPI	CCDG	4 cut(s)	32, 44, 183, 284
Lsp1109I	GCAGC	1 cut(s)	363
LweI	GCATC	2 cut(s)	346, 358
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	3 cut(s)	90, 287, 318
MflI	RGATCY	1 cut(s)	318
MluCI	AATT	2 cut(s)	174, 202
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	2 cut(s)	325, 358
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	3 cut(s)	177, 314, 388
NdeII	GATC	1 cut(s)	318
NlaIII	CATG	1 cut(s)	358
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	55, 81
PkrI	GCNGC	2 cut(s)	113, 353
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	318
SaqAI	TTAA	3 cut(s)	177, 314, 388
SatI	GCNGC	2 cut(s)	112, 352
Sau3AI	GATC	1 cut(s)	318
SchI	GAGTC	1 cut(s)	143
SetI	ASST	7 cut(s)	48, 54, 124, 211, 252, 313, 385
SfaNI	GCATC	2 cut(s)	346, 358
Sse9I	AATT	2 cut(s)	174, 202
SsiI	CCGC	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	1 cut(s)	328
TasI	AATT	2 cut(s)	174, 202
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	2 cut(s)	55, 81
Tru1I	TTAA	3 cut(s)	177, 314, 388
Tru9I	TTAA	3 cut(s)	177, 314, 388
TseI	GCWGC	1 cut(s)	351
TspDTI	ATGAA	1 cut(s)	7
XapI	RAATTY	1 cut(s)	202
XmnI	GAANNNNTTC	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.