Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8363719.1

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Forward (+)

83 .. 1092

Gene Structure 1010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8363719.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 479 bp

atgcaaatatgtcatagagaccttaagcttgaaaatacactcttagatgacagtgcagcacctcgtgtgaaaatatgtgattttggatactcgaagtcattactgagttctctgccaaagtctactgtgggaacacctgcttatattgcacctgaagttctatctaaaaaacaatatgatggacagattgcagatgtttggtcttgtggagtcacattatatgtcatgcttgtcggagcatatccctttgaagatcctaaggaccctatgaactttagaaaaacaattcggcggatccttactgtacgctatgtaatcccggacagtgtgccaatttctgtggaatgtagacaccttttgtctaagatttttgttgcaaacccggaaaagagaataaaaattccagaaattaagacccaccgttggtttgcaaagaacttacctctggaaatgaaggaaggaggaacttgggagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

159

Amino Acids

18.14

Weight (kDa)

9.03

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	145
Acc36I	ACCTGC	1 cut(s)	145
AccI	GTMKAC	2 cut(s)	122, 349
AciI	CCGC	1 cut(s)	292
AclWI	GGATC	3 cut(s)	248, 289, 302
AcsI	RAATTY	1 cut(s)	399
AcuI	CTGAAG	1 cut(s)	174
AdeI	CACNNNGTG	1 cut(s)	65
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	423
AflII	CTTAAG	1 cut(s)	23
AgsI	TTSAA	2 cut(s)	32, 251
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	3 cut(s)	248, 289, 302
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	262
AsuC2I	CCSGG	2 cut(s)	320, 383
AvaII	GGWCC	1 cut(s)	262
AxyI	CCTNAGG	1 cut(s)	258
BamHI	GGATCC	1 cut(s)	294
BauI	CACGAG	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	1 cut(s)	173
BciVI	GTATCC	1 cut(s)	80
BcnI	CCSGG	2 cut(s)	320, 383
BcoDI	GTCTC	1 cut(s)	12
BfrI	CTTAAG	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	145
BfuI	GTATCC	1 cut(s)	80
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	2 cut(s)	320, 383
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	2 cut(s)	264, 296
BmrFI	CCNGG	2 cut(s)	320, 383
BpuMI	CCSGG	2 cut(s)	320, 383
BsaI	GGTCTC	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	423
Bse21I	CCTNAGG	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	423
BseMII	CTCAG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	68
BsgI	GTGCAG	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	320, 383
BslI	CCNNNNNNNGG	1 cut(s)	423
BsmAI	GTCTC	1 cut(s)	12
Bso31I	GGTCTC	1 cut(s)	12
Bsp143I	GATC	2 cut(s)	253, 294
BspACI	CCGC	1 cut(s)	292
BspCNI	CTCAG	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	264, 296
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	3 cut(s)	248, 289, 302
BspTI	CTTAAG	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	12
BssMI	GATC	2 cut(s)	253, 294
BssSI	CACGAG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	63
Bst4CI	ACNGT	5 cut(s)	53, 127, 304, 326, 422
BstAFI	CTTAAG	1 cut(s)	23
BstDEI	CTNAG	4 cut(s)	43, 104, 258, 363
BstKTI	GATC	2 cut(s)	256, 297
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	2 cut(s)	253, 294
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstSCI	CCNGG	2 cut(s)	318, 381
BstV1I	GCAGC	1 cut(s)	68
BstX2I	RGATCY	2 cut(s)	253, 294
BstYI	RGATCY	2 cut(s)	253, 294
Bsu36I	CCTNAGG	1 cut(s)	258
BsuI	GTATCC	1 cut(s)	80
BtsIMutI	CAGTG	2 cut(s)	58, 331
BveI	ACCTGC	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	305
CspCI	CAANNNNNGTGG	2 cut(s)	321, 356
CviAII	CATG	1 cut(s)	226
CviJI	RGCY	1 cut(s)	28
CviKI_1	RGCY	1 cut(s)	28
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	4 cut(s)	43, 104, 258, 363
DpnI	GATC	2 cut(s)	255, 296
DpnII	GATC	2 cut(s)	253, 294
DraIII	CACNNNGTG	1 cut(s)	65
EciI	GGCGGA	1 cut(s)	307
Eco31I	GGTCTC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	174
Eco81I	CCTNAGG	1 cut(s)	258
EcoO109I	RGGNCCY	1 cut(s)	262
FaeI	CATG	1 cut(s)	229
FatI	CATG	1 cut(s)	225
FblI	GTMKAC	2 cut(s)	122, 349
Fnu4HI	GCNGC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	57
HapII	CCGG	2 cut(s)	320, 383
Hin1II	CATG	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	1 cut(s)	210
HpaII	CCGG	2 cut(s)	320, 383
Hpy166II	GTNNAC	2 cut(s)	123, 350
Hpy188I	TCNGA	1 cut(s)	236
Hpy188III	TCNNGA	2 cut(s)	404, 446
Hpy8I	GTNNAC	2 cut(s)	123, 350
HpyAV	CCTTC	2 cut(s)	448, 452
HpyCH4III	ACNGT	5 cut(s)	53, 127, 304, 326, 422
HpyCH4V	TGCA	6 cut(s)	4, 56, 149, 191, 377, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	4 cut(s)	43, 104, 258, 363
Hsp92II	CATG	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	253, 294
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	6 cut(s)	150, 165, 333, 396, 417, 431
Lsp1109I	GCAGC	1 cut(s)	68
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	2 cut(s)	255, 296
MboI	GATC	2 cut(s)	253, 294
MboII	GAAGA	1 cut(s)	263
MflI	RGATCY	2 cut(s)	253, 294
MluCI	AATT	4 cut(s)	285, 333, 399, 408
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	3 cut(s)	72, 453, 455
MseI	TTAA	2 cut(s)	24, 411
MspCI	CTTAAG	1 cut(s)	23
MspI	CCGG	2 cut(s)	320, 383
MspR9I	CCNGG	2 cut(s)	320, 383
MwoI	GCNNNNNNNGC	1 cut(s)	146
NciI	CCSGG	2 cut(s)	320, 383
NdeII	GATC	2 cut(s)	253, 294
NlaIII	CATG	1 cut(s)	229
NlaIV	GGNNCC	2 cut(s)	264, 296
NmuCI	GTSAC	1 cut(s)	211
PaqCI	CACCTGC	1 cut(s)	145
PfoI	TCCNGGA	1 cut(s)	318
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PpuMI	RGGWCCY	1 cut(s)	262
Psp5II	RGGWCCY	1 cut(s)	262
PspN4I	GGNNCC	2 cut(s)	264, 296
PspPI	GGNCC	1 cut(s)	262
PspPPI	RGGWCCY	1 cut(s)	262
PsuI	RGATCY	2 cut(s)	253, 294
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	24, 411
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	2 cut(s)	253, 294
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	219
ScrFI	CCNGG	2 cut(s)	320, 383
SetI	ASST	7 cut(s)	24, 30, 64, 139, 154, 357, 445
SinI	GGWCC	1 cut(s)	262
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	4 cut(s)	285, 333, 399, 408
SsiI	CCGC	1 cut(s)	292
StyD4I	CCNGG	2 cut(s)	318, 381
TaaI	ACNGT	5 cut(s)	53, 127, 304, 326, 422
TaqI	TCGA	1 cut(s)	92
TasI	AATT	4 cut(s)	285, 333, 399, 408
Tru1I	TTAA	2 cut(s)	24, 411
Tru9I	TTAA	2 cut(s)	24, 411
TscAI	CASTG	2 cut(s)	58, 331
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	284, 467
TspRI	CASTG	2 cut(s)	58, 331
Vha464I	CTTAAG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	262
XapI	RAATTY	1 cut(s)	399
XmiI	GTMKAC	2 cut(s)	122, 349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.