Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Reverse (-)

33766639 .. 33768688

Gene Structure 2050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24503

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCAGAACCTTGATATAGATGAAAATGTGCAAAGGGAAATCATGAACCACAGATCCTTAAAGCACCCCAATATTGTTGAATTTAAAGAGGTCCTACTGACACCAACTCATCTAGGTATAGTAATGGAGTATGCTGAACAAGGAGAATTGTATGAGAGAATTTGCAAGGCTGGTAAATTTAGTGAGGGTGAGATTTCAGATGTCTGGTCTTGTGGAATCACCTTATTTGTCATGATCTTTGGGGCATATCCCTTTGAAGATCTTCAGGACCCTTTAAACTTTACAAAAACCATTCGGAGAATAACAATCCCTGAAATTAAGAGCCATCCTTGGTTTGTAAAGAATTTACCTATGGAAATGATGGAAGGAGGAAGTTGGAAAAGCAATGAGGTGAACAATCCATCCCAAAGTGTTGAAGAAGTTCAGTCTATAATACAACAGGCAAGAAGACCTTTAAAGATCTCAACTGTCAATAGGCATCTCGTTGGAAGCAGCACGGCTATTGATGATGCTTATGTTGGAGCTAATGCGTACCCTCTTGACAGCACCTGTAGACATGATAAAAACCCGTCTCATGCTGCAACAGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

197

Amino Acids

22.33

Weight (kDa)

5.49

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	7 - 65	1.2e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	553
AclWI	GGATC	1 cut(s)	48
AcsI	RAATTY	5 cut(s)	80, 159, 176, 343, 588
AcuI	CTGAAG	1 cut(s)	248
AfaI	GTAC	1 cut(s)	533
AgsI	TTSAA	3 cut(s)	80, 257, 416
AloI	GAACNNNNNNTCC	4 cut(s)	38, 70, 386, 418
AluBI	AGCT	1 cut(s)	524
AluI	AGCT	1 cut(s)	524
Alw26I	GTCTC	1 cut(s)	576
AlwI	GGATC	1 cut(s)	48
AlwNI	CAGNNNCTG	1 cut(s)	549
ApeKI	GCWGC	2 cut(s)	492, 578
ApoI	RAATTY	5 cut(s)	80, 159, 176, 343, 588
Asp700I	GAANNNNTTC	2 cut(s)	261, 420
AspS9I	GGNCC	2 cut(s)	91, 268
AsuHPI	GGTGA	3 cut(s)	200, 211, 403
AvaII	GGWCC	2 cut(s)	91, 268
BbsI	GAAGAC	1 cut(s)	454
BbvI	GCAGC	2 cut(s)	504, 565
BccI	CCATC	3 cut(s)	333, 355, 409
BceAI	ACGGC	1 cut(s)	513
BcoDI	GTCTC	1 cut(s)	576
BfaI	CTAG	1 cut(s)	113
BfmI	CTRYAG	1 cut(s)	550
BglII	AGATCT	2 cut(s)	259, 459
BisI	GCNGC	2 cut(s)	493, 579
BlsI	GCNGC	2 cut(s)	494, 580
Bme18I	GGWCC	2 cut(s)	91, 268
BmgT120I	GGNCC	2 cut(s)	91, 268
BmiI	GGNNCC	1 cut(s)	270
BmsI	GCATC	2 cut(s)	487, 499
BpiI	GAAGAC	1 cut(s)	454
BsaJI	CCNNGG	1 cut(s)	329
Bse3DI	GCAATG	1 cut(s)	391
BseDI	CCNNGG	1 cut(s)	329
BseGI	GGATG	2 cut(s)	325, 401
BseMI	GCAATG	1 cut(s)	391
BseXI	GCAGC	2 cut(s)	504, 565
BsmAI	GTCTC	1 cut(s)	576
BsmBI	CGTCTC	1 cut(s)	576
Bsp143I	GATC	4 cut(s)	53, 234, 259, 459
BspHI	TCATGA	2 cut(s)	42, 231
BspLI	GGNNCC	1 cut(s)	270
BspPI	GGATC	1 cut(s)	48
BsrDI	GCAATG	1 cut(s)	391
BssECI	CCNNGG	1 cut(s)	329
BssMI	GATC	4 cut(s)	53, 234, 259, 459
BssT1I	CCWWGG	1 cut(s)	329
Bst4CI	ACNGT	1 cut(s)	469
BstF5I	GGATG	2 cut(s)	325, 401
BstKTI	GATC	4 cut(s)	56, 237, 262, 462
BstMAI	GTCTC	1 cut(s)	576
BstMBI	GATC	4 cut(s)	53, 234, 259, 459
BstSFI	CTRYAG	1 cut(s)	550
BstV1I	GCAGC	2 cut(s)	504, 565
BstV2I	GAAGAC	1 cut(s)	454
BstX2I	RGATCY	3 cut(s)	53, 259, 459
BstYI	RGATCY	3 cut(s)	53, 259, 459
BtsCI	GGATG	2 cut(s)	325, 401
CaiI	CAGNNNCTG	1 cut(s)	549
CciI	TCATGA	2 cut(s)	42, 231
Cfr13I	GGNCC	2 cut(s)	91, 268
Csp6I	GTAC	1 cut(s)	532
CviAII	CATG	4 cut(s)	43, 232, 557, 575
CviJI	RGCY	4 cut(s)	170, 324, 500, 524
CviKI_1	RGCY	4 cut(s)	170, 324, 500, 524
CviQI	GTAC	1 cut(s)	532
DpnI	GATC	4 cut(s)	55, 236, 261, 461
DpnII	GATC	4 cut(s)	53, 234, 259, 459
DraI	TTTAAA	3 cut(s)	85, 276, 456
Eco130I	CCWWGG	1 cut(s)	329
Eco47I	GGWCC	2 cut(s)	91, 268
Eco57I	CTGAAG	1 cut(s)	248
EcoO109I	RGGNCCY	2 cut(s)	91, 268
EcoT14I	CCWWGG	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	329
Esp3I	CGTCTC	1 cut(s)	576
FaeI	CATG	4 cut(s)	46, 235, 560, 578
FalI	AAGNNNNNCTT	2 cut(s)	436, 468
FatI	CATG	4 cut(s)	42, 231, 556, 574
FblI	GTMKAC	1 cut(s)	553
Fnu4HI	GCNGC	2 cut(s)	493, 579
FokI	GGATG	2 cut(s)	312, 388
Fsp4HI	GCNGC	2 cut(s)	493, 579
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	2 cut(s)	493, 579
Hin1II	CATG	4 cut(s)	46, 235, 560, 578
HinfI	GANTC	1 cut(s)	216
HphI	GGTGA	3 cut(s)	200, 211, 403
Hpy166II	GTNNAC	2 cut(s)	394, 554
Hpy188I	TCNGA	2 cut(s)	199, 297
Hpy188III	TCNNGA	4 cut(s)	43, 232, 266, 539
Hpy8I	GTNNAC	2 cut(s)	394, 554
HpyAV	CCTTC	1 cut(s)	359
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4V	TGCA	4 cut(s)	4, 31, 165, 581
Hsp92II	CATG	4 cut(s)	46, 235, 560, 578
Kzo9I	GATC	4 cut(s)	53, 234, 259, 459
LmnI	GCTCC	1 cut(s)	521
LpnPI	CCDG	7 cut(s)	156, 190, 251, 324, 425, 562, 570
Lsp1109I	GCAGC	2 cut(s)	504, 565
LweI	GCATC	2 cut(s)	487, 499
MaeI	CTAG	1 cut(s)	113
MalI	GATC	4 cut(s)	55, 236, 261, 461
MboI	GATC	4 cut(s)	53, 234, 259, 459
MboII	GAAGA	4 cut(s)	254, 269, 428, 459
MflI	RGATCY	3 cut(s)	53, 259, 459
MluCI	AATT	7 cut(s)	80, 146, 159, 176, 315, 343, 588
MmeI	TCCRAC	3 cut(s)	356, 466, 499
MnlI	CCTC	5 cut(s)	82, 178, 362, 382, 546
MroXI	GAANNNNTTC	2 cut(s)	261, 420
MseI	TTAA	5 cut(s)	59, 84, 275, 318, 455
NdeII	GATC	4 cut(s)	53, 234, 259, 459
NlaIII	CATG	4 cut(s)	46, 235, 560, 578
NlaIV	GGNNCC	1 cut(s)	270
PagI	TCATGA	2 cut(s)	42, 231
PdmI	GAANNNNTTC	2 cut(s)	261, 420
PfeI	GAWTC	1 cut(s)	216
PkrI	GCNGC	2 cut(s)	494, 580
PpuMI	RGGWCCY	2 cut(s)	91, 268
Psp5II	RGGWCCY	2 cut(s)	91, 268
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	2 cut(s)	91, 268
PspPPI	RGGWCCY	2 cut(s)	91, 268
PstNI	CAGNNNCTG	1 cut(s)	549
PsuI	RGATCY	3 cut(s)	53, 259, 459
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
SaqAI	TTAA	5 cut(s)	59, 84, 275, 318, 455
SatI	GCNGC	2 cut(s)	493, 579
Sau3AI	GATC	4 cut(s)	53, 234, 259, 459
Sau96I	GGNCC	2 cut(s)	91, 268
SetI	ASST	9 cut(s)	12, 93, 118, 224, 352, 393, 454, 526, 551
SfaNI	GCATC	2 cut(s)	487, 499
SfcI	CTRYAG	1 cut(s)	550
SinI	GGWCC	2 cut(s)	91, 268
Sse9I	AATT	7 cut(s)	80, 146, 159, 176, 315, 343, 588
SspI	AATATT	1 cut(s)	73
SspMI	CTAG	1 cut(s)	113
StyI	CCWWGG	1 cut(s)	329
TaaI	ACNGT	1 cut(s)	469
TasI	AATT	7 cut(s)	80, 146, 159, 176, 315, 343, 588
TfiI	GAWTC	1 cut(s)	216
Tru1I	TTAA	5 cut(s)	59, 84, 275, 318, 455
Tru9I	TTAA	5 cut(s)	59, 84, 275, 318, 455
TseI	GCWGC	2 cut(s)	492, 578
TspDTI	ATGAA	2 cut(s)	36, 59
VpaK11BI	GGWCC	2 cut(s)	91, 268
XapI	RAATTY	5 cut(s)	80, 159, 176, 343, 588
XmiI	GTMKAC	1 cut(s)	553
XmnI	GAANNNNTTC	2 cut(s)	261, 420
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.