Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000609

Physical Location & Seq

Genomic Coordinates Forward (+)

69027121 .. 69030288

Gene Structure 3168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21754

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGAGAAGTATGAGGTTGTGAAAGATATTGGGTCTGGGAATTTTGGTGTAGCAAGGCTGGTCAGAGACAAGAATACCCAAGAACTCTTAGCTGTTAAGTTCATTGAGAGAGGCCTTAAGATAGATGAAAATGTGCTAAGGGAAATCATGAACCACAGATCCTTGAAGCATCCCAATATTGTTCAGTTCAAAGAGGTTTTGCTGACACCAACTCATTTAGCCATTGTGATGGAATATGCTGCTGGAGGAGAACTCTATGACAGAATAGTCAAGGCTGTTAGGTTTAGTGAGAATGAGGCAAGGTTTTTCTTCCAGCAATTGATATCCGGAGTTAGTTACTGTCATACAATGTCATTACTGAGTTCTCTGCCAAAGTCTACTGTGGGAACACCTGCTTATATTGCACCCGAAGTTCTATCTAAAAAACAATATGATGGACAGGTGATTGCAGATGTTTGGTCTTGTGGAGTCACATTATATGTCATGCTCGTCGGAGCATATCCCTTTGAAGATCCTAAGGACCTTATGAACTTTAGAAAAACAATTCGACGGATCCTTACTGTACGCTACGTAATCCCCGACAGTGTGCGAATTTCTGTGGAGTGTAGACACCTGTTGTCTAAGATTTTTGTTGCAAACCCGGAAAAGAAATTAAGACCCACCGACCACCGTTGGTTTGCAAAGAACTTACCTCTGGAAATGAAGGAAGGAGGAACTTGGGAGAATAATGCTGTAAACACACCATCCCAAAGCATTGAAGAAGTTCAGTCCATAAGAAAAGAGGCAAGAAAACCTTTGAAGGTCCCAACTGTCAATAGGCATTGCGTTGGAAGCAGCATGGCTATTGATGATGCTGATGTTGAAGGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

290

Amino Acids

32.92

Weight (kDa)

8.9

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 118	5.1e-27	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 118	1.4e-11	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	124 - 219	1.8e-16	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78290 AT1G78290
fragaria_vesca	FvH4_4g14310 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36721 FvH4_5g36722 FvH4_5g36723 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724 FvH4_5g36724
malus_domestica	MD08G1187200.v1.1 MD15G1373000.v1.1 MD15G1373200.v1.1
prunus_persica	Prupe.1G521600_v2.0.a1 Prupe.1G521800_v2.0.a1 Prupe.1G521800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273131 RchiOBHm_Chr7g0242711 RchiOBHm_Chr7g0242721 RchiOBHm_Chr7g0242741 RchiOBHm_Chr7g0242771 RchiOBHm_Chr7g0242781 RchiOBHm_Chr7g0242791
rosa_laevigata	RLG00000000879 RLG00000000880 RLG00000000882 RLG00000000884 RLG00000000885
rosa_multiflora	Rmu_co8363719.1_g000001 Rmu_sc0004165.1_g000026 Rmu_sc0004165.1_g000038 Rmu_sc0004165.1_g000043 Rmu_sc0004165.1_g000046 Rmu_sc0014793.1_g000006
rosa_roxburghii	Rroxscaffold_3G00222410 Rroxscaffold_3G00222450 Rroxscaffold_3G00222470 Rroxscaffold_3G00222490 Rroxscaffold_3G00222560
rosa_rugosa	Rorug07G0316400 Rorug07G0316500 Rorug07G0316800 Rorug07G0316900 Rorug07G0317000 Rorug07G0317100 Rorug07G0317200 Rorug07G0317200 Rorug07G0317300 Rorug07G0317400
rosa_samantha	Rh6CG191100 Rh7AG471600 Rh7AG472100 Rh7BG441800 Rh7BG442600 Rh7BG442700 Rh7CG488500 Rh7CG488600 Rh7CG489000 Rh7DG457100 Rh7DG457200 Rh7DG457500 Rh7DG457700
rosa_wichuraiana	Rw7G039140 Rw7G039150 Rw7G039160 Rw7G039180 Rw7G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	400
AasI	GACNNNNNNGTC	1 cut(s)	266
Acc36I	ACCTGC	1 cut(s)	400
AccI	GTMKAC	2 cut(s)	377, 607
AccIII	TCCGGA	1 cut(s)	326
AclWI	GGATC	4 cut(s)	153, 506, 547, 560
AcsI	RAATTY	2 cut(s)	40, 591
AfaI	GTAC	2 cut(s)	564, 868
AflII	CTTAAG	1 cut(s)	116
AgsI	TTSAA	6 cut(s)	166, 190, 509, 758, 799, 863
AloI	GAACNNNNNNTCC	2 cut(s)	143, 175
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	4 cut(s)	153, 506, 547, 560
Aor13HI	TCCGGA	1 cut(s)	326
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	2 cut(s)	239, 834
ApoI	RAATTY	2 cut(s)	40, 591
Asp700I	GAANNNNTTC	1 cut(s)	762
AspS9I	GGNCC	2 cut(s)	520, 802
AsuC2I	CCSGG	1 cut(s)	641
AsuHPI	GGTGA	1 cut(s)	454
AvaII	GGWCC	2 cut(s)	520, 802
AxyI	CCTNAGG	1 cut(s)	516
BamHI	GGATCC	1 cut(s)	552
BbvI	GCAGC	2 cut(s)	226, 846
BccI	CCATC	3 cut(s)	223, 428, 751
BcnI	CCSGG	1 cut(s)	641
BcoDI	GTCTC	1 cut(s)	60
BfrI	CTTAAG	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	400
BisI	GCNGC	2 cut(s)	240, 835
BlsI	GCNGC	2 cut(s)	241, 836
Bme1390I	CCNGG	1 cut(s)	641
Bme18I	GGWCC	2 cut(s)	520, 802
BmgT120I	GGNCC	2 cut(s)	520, 802
BmiI	GGNNCC	2 cut(s)	554, 804
BmrFI	CCNGG	1 cut(s)	641
BmsI	GCATC	2 cut(s)	178, 841
BplI	GAGNNNNNCTC	2 cut(s)	237, 269
BpmI	CTGGAG	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	641
BsaAI	YACGTR	1 cut(s)	571
BsaWI	WCCGGW	1 cut(s)	326
Bse21I	CCTNAGG	1 cut(s)	516
Bse3DI	GCAATG	1 cut(s)	820
BseAI	TCCGGA	1 cut(s)	326
BseGI	GGATG	2 cut(s)	169, 743
BseMI	GCAATG	1 cut(s)	820
BseMII	CTCAG	1 cut(s)	350
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	226, 846
BshFI	GGCC	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	327, 641
BslFI	GGGAC	1 cut(s)	788
BsmAI	GTCTC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	788
BsnI	GGCC	1 cut(s)	114
Bsp13I	TCCGGA	1 cut(s)	326
Bsp143I	GATC	3 cut(s)	158, 511, 552
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	351
BspEI	TCCGGA	1 cut(s)	326
BspHI	TCATGA	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	554, 804
BspMI	ACCTGC	1 cut(s)	400
BspPI	GGATC	4 cut(s)	153, 506, 547, 560
BspTI	CTTAAG	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	820
BssMI	GATC	3 cut(s)	158, 511, 552
Bst4CI	ACNGT	6 cut(s)	341, 382, 562, 584, 671, 811
BstAFI	CTTAAG	1 cut(s)	116
BstBAI	YACGTR	1 cut(s)	571
BstDEI	CTNAG	5 cut(s)	88, 137, 359, 516, 621
BstF5I	GGATG	2 cut(s)	169, 743
BstKTI	GATC	3 cut(s)	161, 514, 555
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	3 cut(s)	158, 511, 552
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 831
BstSCI	CCNGG	1 cut(s)	639
BstSNI	TACGTA	1 cut(s)	571
BstV1I	GCAGC	2 cut(s)	226, 846
BstX2I	RGATCY	3 cut(s)	158, 511, 552
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	3 cut(s)	158, 511, 552
Bsu36I	CCTNAGG	1 cut(s)	516
BsuRI	GGCC	1 cut(s)	114
BtsCI	GGATG	2 cut(s)	169, 743
BtsIMutI	CAGTG	1 cut(s)	589
BveI	ACCTGC	1 cut(s)	400
CciI	TCATGA	1 cut(s)	147
Cfr13I	GGNCC	2 cut(s)	520, 802
Csp6I	GTAC	2 cut(s)	563, 867
CviAII	CATG	3 cut(s)	148, 484, 838
CviJI	RGCY	6 cut(s)	58, 92, 114, 221, 275, 842
CviKI_1	RGCY	6 cut(s)	58, 92, 114, 221, 275, 842
CviQI	GTAC	2 cut(s)	563, 867
DdeI	CTNAG	5 cut(s)	88, 137, 359, 516, 621
DpnI	GATC	3 cut(s)	160, 513, 554
DpnII	GATC	3 cut(s)	158, 511, 552
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
Eco105I	TACGTA	1 cut(s)	571
Eco147I	AGGCCT	1 cut(s)	114
Eco32I	GATATC	1 cut(s)	324
Eco47I	GGWCC	2 cut(s)	520, 802
Eco81I	CCTNAGG	1 cut(s)	516
EcoO109I	RGGNCCY	2 cut(s)	520, 802
EcoRV	GATATC	1 cut(s)	324
FaeI	CATG	3 cut(s)	151, 487, 841
FalI	AAGNNNNNCTT	2 cut(s)	778, 810
FaqI	GGGAC	1 cut(s)	788
FatI	CATG	3 cut(s)	147, 483, 837
FblI	GTMKAC	2 cut(s)	377, 607
Fnu4HI	GCNGC	2 cut(s)	240, 835
FokI	GGATG	2 cut(s)	156, 730
Fsp4HI	GCNGC	2 cut(s)	240, 835
GluI	GCNGC	2 cut(s)	240, 835
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	2 cut(s)	327, 641
Hin1II	CATG	3 cut(s)	151, 487, 841
HinfI	GANTC	1 cut(s)	468
HpaII	CCGG	2 cut(s)	327, 641
HphI	GGTGA	1 cut(s)	454
Hpy166II	GTNNAC	3 cut(s)	378, 608, 736
Hpy188I	TCNGA	2 cut(s)	65, 494
Hpy188III	TCNNGA	3 cut(s)	148, 327, 695
Hpy8I	GTNNAC	3 cut(s)	378, 608, 736
Hpy99I	CGWCG	2 cut(s)	494, 552
HpyAV	CCTTC	4 cut(s)	697, 701, 793, 857
HpyCH4III	ACNGT	6 cut(s)	341, 382, 562, 584, 671, 811
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	4 cut(s)	404, 449, 635, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 831
HpyF3I	CTNAG	5 cut(s)	88, 137, 359, 516, 621
HpySE526I	ACGT	1 cut(s)	570
Hsp92II	CATG	3 cut(s)	151, 487, 841
Kpn2I	TCCGGA	1 cut(s)	326
Kzo9I	GATC	3 cut(s)	158, 511, 552
LmnI	GCTCC	1 cut(s)	494
Lsp1109I	GCAGC	2 cut(s)	226, 846
LweI	GCATC	2 cut(s)	178, 841
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	2 cut(s)	335, 469
MalI	GATC	3 cut(s)	160, 513, 554
MboI	GATC	3 cut(s)	158, 511, 552
MboII	GAAGA	3 cut(s)	301, 521, 770
MfeI	CAATTG	1 cut(s)	317
MflI	RGATCY	3 cut(s)	158, 511, 552
MluCI	AATT	5 cut(s)	40, 317, 543, 591, 650
MlyI	GAGTC	1 cut(s)	477
MmeI	TCCRAC	2 cut(s)	472, 808
MnlI	CCTC	8 cut(s)	7, 104, 187, 239, 289, 702, 704, 775
MroI	TCCGGA	1 cut(s)	326
MroXI	GAANNNNTTC	1 cut(s)	762
MseI	TTAA	3 cut(s)	96, 117, 653
MslI	CAYNNNNRTG	1 cut(s)	227
MspCI	CTTAAG	1 cut(s)	116
MspI	CCGG	2 cut(s)	327, 641
MspR9I	CCNGG	1 cut(s)	641
MunI	CAATTG	1 cut(s)	317
MwoI	GCNNNNNNNGC	2 cut(s)	401, 831
NciI	CCSGG	1 cut(s)	641
NdeII	GATC	3 cut(s)	158, 511, 552
NlaIII	CATG	3 cut(s)	151, 487, 841
NlaIV	GGNNCC	2 cut(s)	554, 804
NmuCI	GTSAC	1 cut(s)	469
PagI	TCATGA	1 cut(s)	147
PaqCI	CACCTGC	1 cut(s)	400
PceI	AGGCCT	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	1 cut(s)	576
PdmI	GAANNNNTTC	1 cut(s)	762
PkrI	GCNGC	2 cut(s)	241, 836
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
Ppu21I	YACGTR	1 cut(s)	571
PpuMI	RGGWCCY	2 cut(s)	520, 802
Psp5II	RGGWCCY	2 cut(s)	520, 802
PspN4I	GGNNCC	2 cut(s)	554, 804
PspPI	GGNCC	2 cut(s)	520, 802
PspPPI	RGGWCCY	2 cut(s)	520, 802
PsuI	RGATCY	3 cut(s)	158, 511, 552
RsaI	GTAC	2 cut(s)	564, 868
RsaNI	GTAC	2 cut(s)	563, 867
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	3 cut(s)	96, 117, 653
SatI	GCNGC	2 cut(s)	240, 835
Sau3AI	GATC	3 cut(s)	158, 511, 552
Sau96I	GGNCC	2 cut(s)	520, 802
SchI	GAGTC	1 cut(s)	477
ScrFI	CCNGG	1 cut(s)	641
SfaNI	GCATC	2 cut(s)	178, 841
SinI	GGWCC	2 cut(s)	520, 802
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SnaBI	TACGTA	1 cut(s)	571
Sse9I	AATT	5 cut(s)	40, 317, 543, 591, 650
SseBI	AGGCCT	1 cut(s)	114
SspI	AATATT	1 cut(s)	178
StuI	AGGCCT	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	639
TaaI	ACNGT	6 cut(s)	341, 382, 562, 584, 671, 811
TaiI	ACGT	1 cut(s)	573
TaqI	TCGA	1 cut(s)	547
TasI	AATT	5 cut(s)	40, 317, 543, 591, 650
Tru1I	TTAA	3 cut(s)	96, 117, 653
Tru9I	TTAA	3 cut(s)	96, 117, 653
TscAI	CASTG	1 cut(s)	589
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	2 cut(s)	239, 834
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	5 cut(s)	91, 141, 164, 542, 716
TspGWI	ACGGA	1 cut(s)	565
TspRI	CASTG	1 cut(s)	589
Vha464I	CTTAAG	1 cut(s)	116
VpaK11BI	GGWCC	2 cut(s)	520, 802
XapI	RAATTY	2 cut(s)	40, 591
XmiI	GTMKAC	2 cut(s)	377, 607
XmnI	GAANNNNTTC	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.