RLG00000000880
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
7316611 .. 7318839
2229 bp
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UTR
Exon/CDS
Intron
RLM00000000880

Sequence Viewer

Length: 945 bp
ATGGAGAAGTATGAGGTTGTGAAGGATATTGGGTCTGGGAATTTTGGTGTAGCAAGGCTGGTCAGAGACAAGAATACCCAAGAACTCTTAGCTGTTAAGTTCATTGAGAGAGGCCTTAAGCATCATAATGAATTTTTGATTAATTTTCTCAGAAAAAAAGAAGAAGAAATTGGGAATGAATTTGCCTGCAACTTTTATAGCATGTCTTTATACAGAACCTTTTTGCATTGGCAGATAGTGATGACATCTTACTCTATCAATTCTTTATATCATTGCACAATATGTTGTGTGCTGCTGTTTCTTTTTCTCATGATCTTTGATAGTCAAATATGTCATAGAGACCTTAAGCTTGAAAATACACTCTTAGATGACAGCGCAGCGCCTCGTGTGAAAATATGTGACTTTGGATACTCAAAGTCATTACTGAGTTCTCTGCCAAAGTCTACTGTGGGAACACCTGCTTATATTGCACCTGAAGTTCTATCTAAAAAACAATATGATGGACAGATTGCAGATGTTTGGTCTTGTGGAGTCACATTATATGTCATGCTCGTCGGAGCATATCCCTTTGAAGATCCTAAGGACCCTATGAACTTTAGAAAAACAATTCGGCGGATCCTTACTGTACGCTACGTAATCCCGGACAGTGTGCGAATTTCTGTGGAATGTAGACACCTGTTGTCTAAGATTTTTGTTGCAAACCCAGAAAAGAGAATAACAATTCCAGAAATTAAGACCCACCGTTGGTTTGCAAAGAACTTACCTCTGGAAATGAAGGAAGGAGGAACTTGGGAGAATAATGATGTAAACACTCCATCCCAAAGCATTGAAGAAGTTCAGTCCATAATAAAAGAGGCAAGAAAACCTTTGAAGGTCCCAACTGTCAGTAGGCACTGCGTTGGAAGCAGCATGGCTATTGATGATGCTGATGGTGAAGCTACATAA

Protein Analysis

315

Amino Acids

35.93

Weight (kDa)

8.01

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 105 - 250 1.9e-37 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 107 - 245 1.2e-14 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000609)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 466
Acc36I ACCTGC 1 cut(s) 466
AccI GTMKAC 2 cut(s) 443, 670
AciI CCGC 1 cut(s) 613
AclWI GGATC 3 cut(s) 569, 610, 623
AcsI RAATTY 4 cut(s) 40, 131, 179, 654
AcuI CTGAAG 1 cut(s) 495
AfaI GTAC 1 cut(s) 627
AfiI CCNNNNNNNGG 1 cut(s) 744
AflII CTTAAG 2 cut(s) 116, 344
AgsI TTSAA 4 cut(s) 353, 572, 830, 871
AjuI GAANNNNNNNTTGG 2 cut(s) 153, 185
AluBI AGCT 3 cut(s) 92, 349, 938
AluI AGCT 3 cut(s) 92, 349, 938
Alw26I GTCTC 2 cut(s) 60, 333
AlwI GGATC 3 cut(s) 569, 610, 623
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 3 cut(s) 292, 377, 906
ApoI RAATTY 4 cut(s) 40, 131, 179, 654
AseI ATTAAT 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 834
AspLEI GCGC 2 cut(s) 377, 382
AspS9I GGNCC 2 cut(s) 583, 874
AsuC2I CCSGG 1 cut(s) 641
AsuHPI GGTGA 1 cut(s) 944
AvaII GGWCC 2 cut(s) 583, 874
AxyI CCTNAGG 1 cut(s) 579
BamHI GGATCC 1 cut(s) 615
BauI CACGAG 1 cut(s) 384
BbvI GCAGC 3 cut(s) 279, 389, 918
BccI CCATC 3 cut(s) 494, 823, 923
BciVI GTATCC 1 cut(s) 401
BcnI CCSGG 1 cut(s) 641
BcoDI GTCTC 2 cut(s) 60, 333
BfoI RGCGCY 1 cut(s) 383
BfrI CTTAAG 2 cut(s) 116, 344
BfuAI ACCTGC 1 cut(s) 466
BfuI GTATCC 1 cut(s) 401
BisI GCNGC 3 cut(s) 293, 378, 907
BlsI GCNGC 3 cut(s) 294, 379, 908
Bme1390I CCNGG 1 cut(s) 641
Bme18I GGWCC 2 cut(s) 583, 874
BmgT120I GGNCC 2 cut(s) 583, 874
BmiI GGNNCC 3 cut(s) 585, 617, 876
BmrFI CCNGG 1 cut(s) 641
BmsI GCATC 2 cut(s) 130, 913
BpuMI CCSGG 1 cut(s) 641
BsaAI YACGTR 1 cut(s) 634
BsaI GGTCTC 1 cut(s) 333
Bsc4I CCNNNNNNNGG 1 cut(s) 744
Bse21I CCTNAGG 1 cut(s) 579
Bse3DI GCAATG 1 cut(s) 271
BseGI GGATG 1 cut(s) 815
BseLI CCNNNNNNNGG 1 cut(s) 744
BseMI GCAATG 1 cut(s) 271
BseMII CTCAG 2 cut(s) 163, 416
BseXI GCAGC 3 cut(s) 279, 389, 918
BshFI GGCC 1 cut(s) 114
BsiSI CCGG 1 cut(s) 641
BslFI GGGAC 1 cut(s) 860
BslI CCNNNNNNNGG 1 cut(s) 744
BsmAI GTCTC 2 cut(s) 60, 333
BsmFI GGGAC 1 cut(s) 860
BsnI GGCC 1 cut(s) 114
Bso31I GGTCTC 1 cut(s) 333
Bsp143I GATC 3 cut(s) 312, 574, 615
BspACI CCGC 1 cut(s) 613
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 2 cut(s) 162, 417
BspHI TCATGA 1 cut(s) 309
BspLI GGNNCC 3 cut(s) 585, 617, 876
BspMI ACCTGC 1 cut(s) 466
BspPI GGATC 3 cut(s) 569, 610, 623
BspTI CTTAAG 2 cut(s) 116, 344
BspTNI GGTCTC 1 cut(s) 333
BsrDI GCAATG 1 cut(s) 271
BssMI GATC 3 cut(s) 312, 574, 615
BssSI CACGAG 1 cut(s) 384
Bst2BI CACGAG 1 cut(s) 384
Bst4CI ACNGT 5 cut(s) 448, 625, 647, 743, 883
BstAFI CTTAAG 2 cut(s) 116, 344
BstBAI YACGTR 1 cut(s) 634
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 6 cut(s) 88, 149, 364, 425, 579, 684
BstF5I GGATG 1 cut(s) 815
BstH2I RGCGCY 1 cut(s) 383
BstHHI GCGC 2 cut(s) 377, 382
BstKTI GATC 3 cut(s) 315, 577, 618
BstMAI GTCTC 2 cut(s) 60, 333
BstMBI GATC 3 cut(s) 312, 574, 615
BstMWI GCNNNNNNNGC 2 cut(s) 467, 903
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 639
BstSNI TACGTA 1 cut(s) 634
BstV1I GCAGC 3 cut(s) 279, 389, 918
BstX2I RGATCY 2 cut(s) 574, 615
BstYI RGATCY 2 cut(s) 574, 615
Bsu36I CCTNAGG 1 cut(s) 579
BsuI GTATCC 1 cut(s) 401
BsuRI GGCC 1 cut(s) 114
BtsCI GGATG 1 cut(s) 815
BtsI GCAGTG 1 cut(s) 892
BtsIMutI CAGTG 2 cut(s) 652, 892
BveI ACCTGC 1 cut(s) 466
Cac8I GCNNGC 1 cut(s) 187
CciI TCATGA 1 cut(s) 309
CfoI GCGC 2 cut(s) 377, 382
Cfr13I GGNCC 2 cut(s) 583, 874
Csp6I GTAC 1 cut(s) 626
CviAII CATG 4 cut(s) 202, 310, 547, 910
CviJI RGCY 6 cut(s) 58, 92, 114, 349, 914, 938
CviKI_1 RGCY 6 cut(s) 58, 92, 114, 349, 914, 938
CviQI GTAC 1 cut(s) 626
DdeI CTNAG 6 cut(s) 88, 149, 364, 425, 579, 684
DpnI GATC 3 cut(s) 314, 576, 617
DpnII GATC 3 cut(s) 312, 574, 615
EciI GGCGGA 1 cut(s) 628
Eco105I TACGTA 1 cut(s) 634
Eco147I AGGCCT 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 333
Eco47I GGWCC 2 cut(s) 583, 874
Eco57I CTGAAG 1 cut(s) 495
Eco81I CCTNAGG 1 cut(s) 579
EcoO109I RGGNCCY 2 cut(s) 583, 874
FaeI CATG 4 cut(s) 205, 313, 550, 913
FalI AAGNNNNNCTT 2 cut(s) 850, 882
FaqI GGGAC 1 cut(s) 860
FatI CATG 4 cut(s) 201, 309, 546, 909
FblI GTMKAC 2 cut(s) 443, 670
Fnu4HI GCNGC 3 cut(s) 293, 378, 907
FokI GGATG 1 cut(s) 802
Fsp4HI GCNGC 3 cut(s) 293, 378, 907
GlaI GCGC 2 cut(s) 376, 381
GluI GCNGC 3 cut(s) 293, 378, 907
HaeII RGCGCY 1 cut(s) 383
HaeIII GGCC 1 cut(s) 114
HapII CCGG 1 cut(s) 641
HhaI GCGC 2 cut(s) 377, 382
Hin1II CATG 4 cut(s) 205, 313, 550, 913
Hin6I GCGC 2 cut(s) 375, 380
HinP1I GCGC 2 cut(s) 375, 380
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 1 cut(s) 531
HpaII CCGG 1 cut(s) 641
HphI GGTGA 1 cut(s) 944
Hpy166II GTNNAC 3 cut(s) 444, 671, 808
Hpy188I TCNGA 3 cut(s) 65, 152, 557
Hpy188III TCNNGA 3 cut(s) 310, 725, 767
Hpy8I GTNNAC 3 cut(s) 444, 671, 808
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 4 cut(s) 16, 769, 773, 865
HpyCH4III ACNGT 5 cut(s) 448, 625, 647, 743, 883
HpyCH4IV ACGT 1 cut(s) 633
HpyCH4V TGCA 7 cut(s) 189, 226, 276, 470, 512, 698, 752
HpyF10VI GCNNNNNNNGC 2 cut(s) 467, 903
HpyF3I CTNAG 6 cut(s) 88, 149, 364, 425, 579, 684
HpySE526I ACGT 1 cut(s) 633
Hsp92II CATG 4 cut(s) 205, 313, 550, 913
HspAI GCGC 2 cut(s) 375, 380
Kzo9I GATC 3 cut(s) 312, 574, 615
LmnI GCTCC 1 cut(s) 557
Lsp1109I GCAGC 3 cut(s) 279, 389, 918
LweI GCATC 2 cut(s) 130, 913
MaeII ACGT 1 cut(s) 633
MaeIII GTNAC 2 cut(s) 398, 532
MalI GATC 3 cut(s) 314, 576, 617
MboI GATC 3 cut(s) 312, 574, 615
MboII GAAGA 4 cut(s) 173, 176, 584, 842
MflI RGATCY 2 cut(s) 574, 615
MlyI GAGTC 1 cut(s) 540
MmeI TCCRAC 2 cut(s) 535, 880
MnlI CCTC 6 cut(s) 7, 104, 393, 774, 776, 847
MroXI GAANNNNTTC 1 cut(s) 834
MseI TTAA 5 cut(s) 96, 117, 141, 345, 732
MslI CAYNNNNRTG 1 cut(s) 126
MspCI CTTAAG 2 cut(s) 116, 344
MspI CCGG 1 cut(s) 641
MspR9I CCNGG 1 cut(s) 641
MteI GCGCNGCGC 1 cut(s) 378
MwoI GCNNNNNNNGC 2 cut(s) 467, 903
NciI CCSGG 1 cut(s) 641
NdeII GATC 3 cut(s) 312, 574, 615
NlaIII CATG 4 cut(s) 205, 313, 550, 913
NlaIV GGNNCC 3 cut(s) 585, 617, 876
NmuCI GTSAC 2 cut(s) 398, 532
NspI RCATGY 1 cut(s) 205
PagI TCATGA 1 cut(s) 309
PaqCI CACCTGC 1 cut(s) 466
PceI AGGCCT 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 834
PfoI TCCNGGA 1 cut(s) 639
PkrI GCNGC 3 cut(s) 294, 379, 908
PleI GAGTC 1 cut(s) 539
PpsI GAGTC 1 cut(s) 539
Ppu21I YACGTR 1 cut(s) 634
PpuMI RGGWCCY 2 cut(s) 583, 874
PshBI ATTAAT 1 cut(s) 141
Psp5II RGGWCCY 2 cut(s) 583, 874
PspN4I GGNNCC 3 cut(s) 585, 617, 876
PspPI GGNCC 2 cut(s) 583, 874
PspPPI RGGWCCY 2 cut(s) 583, 874
PsuI RGATCY 2 cut(s) 574, 615
RsaI GTAC 1 cut(s) 627
RsaNI GTAC 1 cut(s) 626
RseI CAYNNNNRTG 1 cut(s) 126
SaqAI TTAA 5 cut(s) 96, 117, 141, 345, 732
SatI GCNGC 3 cut(s) 293, 378, 907
Sau3AI GATC 3 cut(s) 312, 574, 615
Sau96I GGNCC 2 cut(s) 583, 874
SchI GAGTC 1 cut(s) 540
ScrFI CCNGG 1 cut(s) 641
SfaNI GCATC 2 cut(s) 130, 913
SinI GGWCC 2 cut(s) 583, 874
SmiMI CAYNNNNRTG 1 cut(s) 126
SmlI CTYRAG 2 cut(s) 116, 344
SmoI CTYRAG 2 cut(s) 116, 344
SnaBI TACGTA 1 cut(s) 634
SseBI AGGCCT 1 cut(s) 114
SsiI CCGC 1 cut(s) 613
StuI AGGCCT 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 639
TaaI ACNGT 5 cut(s) 448, 625, 647, 743, 883
TaiI ACGT 1 cut(s) 636
Tru1I TTAA 5 cut(s) 96, 117, 141, 345, 732
Tru9I TTAA 5 cut(s) 96, 117, 141, 345, 732
TscAI CASTG 2 cut(s) 652, 899
TseFI GTSAC 2 cut(s) 398, 532
TseI GCWGC 3 cut(s) 292, 377, 906
Tsp45I GTSAC 2 cut(s) 398, 532
TspDTI ATGAA 5 cut(s) 91, 144, 192, 605, 788
TspRI CASTG 2 cut(s) 652, 899
Vha464I CTTAAG 2 cut(s) 116, 344
VpaK11BI GGWCC 2 cut(s) 583, 874
VspI ATTAAT 1 cut(s) 141
XapI RAATTY 4 cut(s) 40, 131, 179, 654
XceI RCATGY 1 cut(s) 205
XmiI GTMKAC 2 cut(s) 443, 670
XmnI GAANNNNTTC 1 cut(s) 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.